Wall clock time and date at job start Tue Mar 31 2020 15:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.37898 * 120.00072 * 180.02562 * 5 4 3 7 7 N 1.30975 * 125.06394 * 359.69631 * 6 5 4 8 8 C 1.35902 * 109.62133 * 179.89376 * 7 6 5 9 9 C 1.39715 * 133.40012 * 180.11569 * 8 7 6 10 10 C 1.37678 * 119.77645 * 180.31976 * 9 8 7 11 11 C 1.38703 * 120.50310 * 359.95466 * 10 9 8 12 12 C 1.37961 * 120.42583 * 0.02562 * 11 10 9 13 13 C 1.38661 * 119.85369 * 359.97438 * 12 11 10 14 14 N 1.36538 * 125.06715 * 180.02562 * 6 5 4 15 15 C 1.46503 * 126.37516 * 359.94123 * 14 6 5 16 16 C 1.53001 * 109.47127 * 90.02516 * 15 14 6 17 17 H 1.09005 * 109.47116 * 54.99694 * 16 15 14 18 18 C 1.47209 * 109.47273 * 295.00375 * 16 15 14 19 19 N 5.41501 * 110.28707 * 30.88594 * 2 1 3 20 20 C 1.52991 * 109.47440 * 175.00400 * 16 15 14 21 21 C 1.50705 * 109.47519 * 185.00322 * 20 16 15 22 22 H 1.07995 * 119.99390 * 359.97438 * 21 20 16 23 23 C 1.37875 * 119.99850 * 180.02562 * 21 20 16 24 24 N 1.31512 * 119.99691 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00493 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47138 * 90.00341 * 25 23 21 27 27 H 1.48502 * 109.47452 * 210.00665 * 25 23 21 28 28 H 1.48506 * 109.47029 * 330.00425 * 25 23 21 29 29 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 31 31 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 32 32 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 33 33 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 34 34 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 35 35 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 36 36 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 37 37 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 38 38 H 0.97000 * 120.00420 * 0.02562 * 5 4 3 39 39 H 1.08000 * 120.10513 * 0.31669 * 9 8 7 40 40 H 1.08005 * 119.74716 * 179.97438 * 10 9 8 41 41 H 1.07997 * 119.78843 * 180.02562 * 11 10 9 42 42 H 1.08007 * 120.07552 * 179.97438 * 12 11 10 43 43 H 1.08998 * 109.47383 * 210.02057 * 15 14 6 44 44 H 1.09002 * 109.47067 * 330.02859 * 15 14 6 45 45 H 1.09009 * 109.46965 * 305.00162 * 20 16 15 46 46 H 1.08996 * 109.47556 * 64.99635 * 20 16 15 47 47 H 0.97003 * 120.00744 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.4140 3.0758 -0.0010 7 7 6.3497 2.1594 0.0032 8 6 7.5714 2.7546 -0.0017 9 6 8.8790 2.2624 -0.0024 10 6 9.9399 3.1400 -0.0014 11 6 9.7206 4.5096 -0.0006 12 6 8.4355 5.0114 -0.0003 13 6 7.3551 4.1423 -0.0013 14 7 5.9809 4.3179 0.0000 15 6 5.2687 5.5981 0.0009 16 6 5.0212 6.0430 1.4438 17 1 5.9684 6.0722 1.9825 18 6 4.1117 5.0908 2.1018 19 7 3.4075 4.3588 2.6073 20 6 4.3897 7.4365 1.4467 21 6 4.2590 7.9259 2.8660 22 1 4.5926 7.3049 3.6841 23 6 3.7125 9.1660 3.1200 24 7 3.5989 9.5933 4.3586 25 14 3.1348 10.2398 1.7050 26 1 1.7089 9.9469 1.4113 27 1 3.2799 11.6700 2.0775 28 1 3.9565 9.9562 0.5009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9337 0.9285 0.8891 37 1 3.9329 0.9289 -0.8909 38 1 3.4279 3.5610 0.0011 39 1 9.0569 1.1972 -0.0037 40 1 10.9505 2.7590 -0.0015 41 1 10.5613 5.1875 -0.0002 42 1 8.2713 6.0789 0.0007 43 1 5.8695 6.3487 -0.5126 44 1 4.3141 5.4832 -0.5126 45 1 5.0213 8.1228 0.8824 46 1 3.4029 7.3892 0.9863 47 1 3.2141 10.4656 4.5375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875933596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:45 Heat of formation + Delta-G solvation = 69.541739 kcal Electronic energy + Delta-G solvation = -27231.241569 eV Core-core repulsion = 23606.434156 eV Total energy + Delta-G solvation = -3624.807413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.01100 -39.01289 -38.34100 -37.35474 -36.07369 -34.99620 -34.83103 -33.34150 -31.15418 -30.39511 -29.12617 -28.63156 -25.65553 -24.64605 -23.43272 -23.31321 -22.67674 -22.07141 -21.15595 -19.12178 -18.90897 -18.46716 -17.82636 -17.22442 -16.99003 -16.42597 -16.34050 -16.06614 -15.32702 -15.23295 -15.18843 -14.82308 -14.66993 -14.62410 -14.47124 -14.44899 -14.03538 -13.65062 -13.34316 -13.28844 -13.11961 -13.03680 -12.75776 -12.65713 -12.44756 -12.29360 -12.11355 -12.04262 -12.00693 -11.96401 -11.73427 -11.57274 -11.47758 -11.15438 -10.76721 -10.75114 -10.52439 -9.01457 -8.41597 -8.26646 -6.34276 0.24779 0.69711 1.26517 1.43831 1.45303 1.55997 1.76783 1.85697 2.03262 2.31228 2.39738 2.98600 3.08614 3.12100 3.43360 3.76019 3.79554 3.81996 3.95084 4.04130 4.15975 4.23968 4.27486 4.40733 4.43652 4.51800 4.56767 4.58799 4.63029 4.66467 4.73464 4.87606 4.88564 4.95657 4.98491 5.12600 5.16634 5.27670 5.30168 5.34210 5.38068 5.42095 5.58356 5.68174 5.74672 5.77480 5.93623 6.20553 6.24713 6.56291 6.61514 6.74483 7.16988 7.30521 8.90392 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007287 B = 0.004576 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3841.639838 B = 6116.816751 C = 9328.622473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.154 3.846 5 N -0.706 5.706 6 C 0.539 3.461 7 N -0.582 5.582 8 C 0.046 3.954 9 C -0.106 4.106 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.106 4.106 13 C 0.027 3.973 14 N -0.514 5.514 15 C 0.122 3.878 16 C 0.007 3.993 17 H 0.107 0.893 18 C 0.230 3.770 19 N -0.476 5.476 20 C 0.003 3.997 21 C -0.534 4.534 22 H 0.021 0.979 23 C 0.004 3.996 24 N -0.955 5.955 25 Si 0.949 3.051 26 H -0.275 1.275 27 H -0.293 1.293 28 H -0.215 1.215 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.408 0.592 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.111 0.889 45 H 0.074 0.926 46 H 0.038 0.962 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -12.172 -17.395 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.030 3.970 5 N -0.348 5.348 6 C 0.183 3.817 7 N -0.315 5.315 8 C -0.071 4.071 9 C -0.126 4.126 10 C -0.136 4.136 11 C -0.138 4.138 12 C -0.127 4.127 13 C -0.079 4.079 14 N -0.212 5.212 15 C -0.001 4.001 16 C -0.015 4.015 17 H 0.124 0.876 18 C -0.087 4.087 19 N -0.152 5.152 20 C -0.036 4.036 21 C -0.572 4.572 22 H 0.040 0.960 23 C -0.193 4.193 24 N -0.595 5.595 25 Si 0.772 3.228 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.137 1.137 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.245 0.755 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.130 0.870 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.098 -14.094 -16.533 22.108 hybrid contribution -0.586 1.979 0.632 2.159 sum 3.512 -12.115 -15.901 20.296 Atomic orbital electron populations 1.21756 0.94899 1.02321 1.01874 1.21390 0.96554 0.94705 1.02742 1.21777 0.92619 0.99123 1.02743 1.21240 0.94360 0.80059 1.01329 1.43534 0.99166 1.09700 1.82404 1.19676 0.87312 0.80850 0.93872 1.70608 0.97563 1.29150 1.34184 1.19265 0.92999 0.90235 1.04568 1.20385 0.88621 1.00549 1.03076 1.21185 0.98997 0.93097 1.00322 1.21200 0.96011 0.95841 1.00793 1.20316 0.90061 0.99270 1.03060 1.18928 0.83340 0.96620 1.09040 1.45207 1.04853 1.05859 1.65274 1.22111 0.99748 0.83592 0.94649 1.19467 0.95789 0.91648 0.94637 0.87563 1.29458 0.93575 0.92523 0.93120 1.80986 1.11779 1.13202 1.09276 1.19574 0.97814 0.90141 0.96106 1.21291 1.41163 1.02060 0.92651 0.96037 1.26065 0.95193 0.99498 0.98501 1.70095 1.46639 1.20657 1.22097 0.85690 0.79595 0.76987 0.80571 1.20046 1.21913 1.13713 0.91614 0.93463 0.92096 0.90533 0.92187 0.92662 0.90156 0.93796 0.91211 0.75482 0.85508 0.82816 0.82499 0.83938 0.83513 0.87047 0.90782 0.94378 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.89 5.93 30.59 0.18 -1.71 16 3 C -0.12 -2.43 5.33 30.59 0.16 -2.27 16 4 C 0.15 3.68 5.94 86.38 0.51 4.20 16 5 N -0.71 -19.06 5.19 -349.37 -1.81 -20.88 16 6 C 0.54 16.72 7.80 260.52 2.03 18.76 16 7 N -0.58 -20.03 10.86 -190.37 -2.07 -22.10 16 8 C 0.05 1.48 7.22 39.41 0.28 1.76 16 9 C -0.11 -2.75 10.10 22.49 0.23 -2.53 16 10 C -0.12 -2.31 10.01 22.25 0.22 -2.09 16 11 C -0.12 -2.27 10.03 22.32 0.22 -2.05 16 12 C -0.11 -2.41 10.04 22.31 0.22 -2.19 16 13 C 0.03 0.77 6.87 38.72 0.27 1.03 16 14 N -0.51 -14.32 2.69 -518.00 -1.39 -15.71 16 15 C 0.12 2.77 5.34 86.38 0.46 3.23 16 16 C 0.01 0.23 2.42 -12.60 -0.03 0.20 16 17 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 18 C 0.23 8.81 11.85 89.46 1.06 9.87 16 19 N -0.48 -19.95 18.46 19.99 0.37 -19.58 16 20 C 0.00 0.09 3.49 29.85 0.10 0.20 16 21 C -0.53 -27.61 9.15 25.60 0.23 -27.37 16 22 H 0.02 1.29 7.84 -2.91 -0.02 1.27 16 23 C 0.00 0.23 5.47 84.65 0.46 0.70 16 24 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 25 Si 0.95 38.89 27.47 68.60 1.88 40.77 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.22 -7.15 6.54 99.48 0.65 -6.50 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 10.36 6.80 -92.71 -0.63 9.73 16 39 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.11 2.10 7.44 -2.39 -0.02 2.08 16 45 H 0.07 2.30 7.20 -2.38 -0.02 2.28 16 46 H 0.04 1.31 7.57 -2.39 -0.02 1.29 16 47 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -74.05 393.24 4.90 -69.15 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.28 Total: 27.68 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 7.34 Total: -1.79 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -4.61 Total: -135.81 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.88 Total: 40.77 kcal Total: -74.05 4.90 -69.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875933596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.689 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds