Wall clock time and date at job start Tue Mar 31 2020 15:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 C 1.53000 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46923 * 180.02562 * 4 3 2 6 6 C 1.37902 * 119.99677 * 179.97438 * 5 4 3 7 7 N 1.30972 * 125.06591 * 0.15828 * 6 5 4 8 8 C 1.35913 * 109.61933 * 180.27727 * 7 6 5 9 9 C 1.39706 * 133.39866 * 179.74193 * 8 7 6 10 10 C 1.37681 * 119.77747 * 180.02562 * 9 8 7 11 11 C 1.38713 * 120.49733 * 359.95861 * 10 9 8 12 12 C 1.37960 * 120.42778 * 0.02893 * 11 10 9 13 13 C 1.38666 * 119.85466 * 359.97438 * 12 11 10 14 14 N 1.36543 * 125.06266 * 179.97438 * 6 5 4 15 15 C 1.46502 * 126.37217 * 359.97438 * 14 6 5 16 16 C 1.52996 * 109.47100 * 269.68312 * 15 14 6 17 17 H 1.09007 * 109.47521 * 305.00231 * 16 15 14 18 18 C 1.47198 * 109.46960 * 65.00262 * 16 15 14 19 19 N 5.43091 * 110.38836 * 329.00982 * 2 1 3 20 20 C 1.53006 * 109.47102 * 185.00461 * 16 15 14 21 21 C 1.50698 * 109.47184 * 175.00464 * 20 16 15 22 22 H 1.08005 * 119.99819 * 359.97438 * 21 20 16 23 23 C 1.37875 * 120.00046 * 180.02562 * 21 20 16 24 24 N 1.31520 * 119.99809 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99912 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47123 * 90.00333 * 25 23 21 27 27 H 1.48506 * 109.46940 * 210.00455 * 25 23 21 28 28 H 1.48493 * 109.47121 * 329.99876 * 25 23 21 29 29 H 1.08998 * 109.47359 * 299.99957 * 1 2 3 30 30 H 1.08999 * 109.47053 * 60.00476 * 1 2 3 31 31 H 1.08999 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47359 * 240.00043 * 2 1 3 33 33 H 1.09005 * 109.47184 * 119.99964 * 2 1 3 34 34 H 1.08998 * 109.46957 * 59.99797 * 3 2 1 35 35 H 1.09005 * 109.47050 * 300.00046 * 3 2 1 36 36 H 1.08994 * 109.46987 * 59.99736 * 4 3 2 37 37 H 1.08999 * 109.47053 * 299.99524 * 4 3 2 38 38 H 0.97004 * 120.00081 * 359.97438 * 5 4 3 39 39 H 1.07999 * 120.11016 * 0.04801 * 9 8 7 40 40 H 1.07994 * 119.75296 * 179.97438 * 10 9 8 41 41 H 1.08001 * 119.78081 * 180.02562 * 11 10 9 42 42 H 1.08003 * 120.06831 * 179.97438 * 12 11 10 43 43 H 1.09004 * 109.46648 * 149.68932 * 15 14 6 44 44 H 1.08995 * 109.47488 * 29.68600 * 15 14 6 45 45 H 1.09001 * 109.47002 * 294.99868 * 20 16 15 46 46 H 1.08993 * 109.46955 * 55.00306 * 20 16 15 47 47 H 0.97004 * 119.99097 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.4141 3.0757 0.0001 7 7 6.3498 2.1592 -0.0033 8 6 7.5716 2.7544 0.0042 9 6 8.8791 2.2622 0.0093 10 6 9.9400 3.1397 0.0172 11 6 9.7207 4.5094 0.0193 12 6 8.4356 5.0113 0.0141 13 6 7.3552 4.1421 0.0062 14 7 5.9811 4.3178 0.0001 15 6 5.2688 5.5980 -0.0004 16 6 5.0285 6.0473 -1.4431 17 1 5.9783 6.0781 -1.9771 18 6 4.1222 5.0971 -2.1083 19 7 3.4220 4.3640 -2.6211 20 6 4.3970 7.4410 -1.4448 21 6 4.2731 7.9346 -2.8632 22 1 4.6113 7.3163 -3.6816 23 6 3.7290 9.1759 -3.1161 24 7 3.6213 9.6069 -4.3540 25 14 3.1447 10.2455 -1.7005 26 1 4.2626 11.1053 -1.2355 27 1 2.0197 11.1005 -2.1576 28 1 2.6870 9.3812 -0.5831 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9329 0.9288 -0.8908 37 1 3.9337 0.9286 0.8891 38 1 3.4279 3.5610 0.0003 39 1 9.0570 1.1970 0.0066 40 1 10.9505 2.7588 0.0215 41 1 10.5614 5.1873 0.0252 42 1 8.2715 6.0788 0.0162 43 1 5.8672 6.3469 0.5184 44 1 4.3117 5.4816 0.5080 45 1 3.4079 7.3922 -0.9894 46 1 5.0259 8.1254 -0.8755 47 1 3.2381 10.4801 -4.5318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875933597.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:49 Heat of formation + Delta-G solvation = 84.803388 kcal Electronic energy + Delta-G solvation = -27225.856519 eV Core-core repulsion = 23601.710901 eV Total energy + Delta-G solvation = -3624.145618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95730 -37.89745 -37.09382 -36.38669 -34.66241 -33.98096 -33.31218 -31.78079 -30.10380 -29.49430 -27.85178 -27.45073 -24.30124 -23.78597 -22.32412 -21.81958 -21.62912 -21.25632 -20.08282 -17.89406 -17.47930 -16.90963 -16.67363 -16.23735 -16.01843 -15.39596 -15.08967 -14.57124 -14.32532 -14.04141 -13.89625 -13.79213 -13.69740 -13.57533 -13.50671 -12.72664 -12.61013 -12.51079 -12.26116 -12.18181 -11.89770 -11.78043 -11.50820 -11.45064 -11.35069 -11.31494 -11.26089 -11.08654 -10.84749 -10.63285 -10.52613 -10.09723 -9.88604 -9.65718 -9.52302 -9.50240 -8.74643 -8.01051 -7.36359 -6.22907 -4.25547 1.24219 1.67778 2.30577 3.04421 3.15379 3.22662 3.25103 3.28955 3.35219 3.41293 4.08321 4.25566 4.31312 4.43168 4.65539 4.72784 4.82277 4.82963 4.99991 5.06424 5.10561 5.15490 5.18591 5.29353 5.31796 5.41486 5.45771 5.56961 5.61218 5.63268 5.68470 5.76466 5.81236 5.88573 5.89036 6.00077 6.04923 6.08889 6.25214 6.36540 6.64600 6.67400 6.68068 6.76674 6.86912 6.89457 7.22655 7.45499 7.61976 8.12409 8.25118 8.27415 8.79404 9.35236 10.89939 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.004570 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.945347 B = 6125.982203 C = 9333.949707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.135 4.135 4 C 0.149 3.851 5 N -0.708 5.708 6 C 0.553 3.447 7 N -0.553 5.553 8 C 0.083 3.917 9 C -0.088 4.088 10 C -0.123 4.123 11 C -0.124 4.124 12 C -0.097 4.097 13 C 0.043 3.957 14 N -0.515 5.515 15 C 0.116 3.884 16 C 0.000 4.000 17 H 0.114 0.886 18 C 0.226 3.774 19 N -0.442 5.442 20 C -0.001 4.001 21 C -0.532 4.532 22 H 0.074 0.926 23 C 0.074 3.926 24 N -0.892 5.892 25 Si 0.878 3.122 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.265 1.265 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.406 0.594 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.027 0.973 46 H 0.037 0.963 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -13.145 14.037 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.173 4.173 4 C 0.026 3.974 5 N -0.350 5.350 6 C 0.198 3.802 7 N -0.284 5.284 8 C -0.035 4.035 9 C -0.109 4.109 10 C -0.144 4.144 11 C -0.144 4.144 12 C -0.119 4.119 13 C -0.063 4.063 14 N -0.212 5.212 15 C -0.007 4.007 16 C -0.023 4.023 17 H 0.131 0.869 18 C -0.091 4.091 19 N -0.119 5.119 20 C -0.040 4.040 21 C -0.570 4.570 22 H 0.092 0.908 23 C -0.129 4.129 24 N -0.530 5.530 25 Si 0.704 3.296 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.189 1.189 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.243 0.757 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.900 -15.040 13.136 20.179 hybrid contribution -0.356 2.375 0.556 2.465 sum 2.544 -12.666 13.692 18.824 Atomic orbital electron populations 1.21764 0.95547 1.01653 1.02018 1.21388 0.96053 0.95713 1.02429 1.21854 0.94197 0.98169 1.03108 1.21236 0.93200 0.80745 1.02251 1.43446 0.99710 1.09172 1.82648 1.19473 0.86886 0.80358 0.93509 1.70699 0.96629 1.27903 1.33218 1.18825 0.92522 0.89210 1.02922 1.20096 0.88744 0.99644 1.02405 1.20783 0.98170 0.93111 1.02300 1.20737 0.95529 0.95330 1.02824 1.19950 0.90149 0.98440 1.03314 1.18603 0.82801 0.96550 1.08372 1.45202 1.04832 1.05870 1.65289 1.22005 0.97932 0.83345 0.97427 1.19438 0.97244 0.93541 0.92047 0.86853 1.28860 0.93801 0.92699 0.93763 1.81059 1.10635 1.11985 1.08184 1.19626 0.96242 0.88254 0.99862 1.20927 1.42597 1.02825 0.90649 0.90803 1.24981 0.94844 0.97549 0.95542 1.69903 1.44390 1.19740 1.18936 0.86824 0.79021 0.80848 0.82884 1.19870 1.21153 1.18927 0.92743 0.92544 0.92657 0.91584 0.91728 0.91441 0.90820 0.91610 0.91651 0.75692 0.85978 0.85934 0.85703 0.85918 0.86984 0.89168 0.95447 0.94504 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.14 16 3 C -0.14 -1.32 5.33 -26.73 -0.14 -1.46 16 4 C 0.15 1.75 5.94 -4.04 -0.02 1.72 16 5 N -0.71 -9.55 5.23 -61.78 -0.32 -9.87 16 6 C 0.55 8.61 7.81 -320.03 -2.50 6.11 16 7 N -0.55 -9.34 10.86 -11.52 -0.13 -9.46 16 8 C 0.08 1.33 7.22 -84.68 -0.61 0.72 16 9 C -0.09 -1.18 10.10 -39.24 -0.40 -1.58 16 10 C -0.12 -1.39 10.01 -39.61 -0.40 -1.79 16 11 C -0.12 -1.40 10.03 -39.51 -0.40 -1.80 16 12 C -0.10 -1.24 10.04 -39.53 -0.40 -1.64 16 13 C 0.04 0.65 6.87 -83.85 -0.58 0.07 16 14 N -0.51 -7.53 2.69 -115.08 -0.31 -7.84 16 15 C 0.12 1.50 5.34 -4.04 -0.02 1.48 16 16 C 0.00 0.00 2.42 -93.41 -0.23 -0.23 16 17 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 18 C 0.23 4.33 11.91 -20.76 -0.25 4.08 16 19 N -0.44 -9.07 18.53 42.16 0.78 -8.29 16 20 C 0.00 -0.02 3.49 -27.88 -0.10 -0.11 16 21 C -0.53 -13.71 9.15 -34.44 -0.32 -14.03 16 22 H 0.07 2.13 7.84 -52.48 -0.41 1.72 16 23 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 24 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 25 Si 0.88 19.60 27.47 -169.99 -4.67 14.93 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 28 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.41 5.26 6.86 -40.82 -0.28 4.98 16 39 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.02 7.43 -51.93 -0.39 0.63 16 45 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 46 H 0.04 0.66 7.57 -51.93 -0.39 0.27 16 47 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -31.93 393.45 -11.53 -43.45 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.35 Total: 5.06 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -6.23 Total: -8.52 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.80 Total: -60.85 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.93 -11.53 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875933597.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.258 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds