Wall clock time and date at job start Tue Mar 31 2020 15:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47145 * 2 1 4 4 C 1.53000 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46923 * 180.02562 * 4 3 2 6 6 C 1.37902 * 119.99677 * 179.97438 * 5 4 3 7 7 N 1.30972 * 125.06591 * 0.15828 * 6 5 4 8 8 C 1.35913 * 109.61933 * 180.27727 * 7 6 5 9 9 C 1.39706 * 133.39866 * 179.74193 * 8 7 6 10 10 C 1.37681 * 119.77747 * 180.02562 * 9 8 7 11 11 C 1.38713 * 120.49733 * 359.95861 * 10 9 8 12 12 C 1.37960 * 120.42778 * 0.02893 * 11 10 9 13 13 C 1.38666 * 119.85466 * 359.97438 * 12 11 10 14 14 N 1.36543 * 125.06266 * 179.97438 * 6 5 4 15 15 C 1.46502 * 126.37217 * 359.97438 * 14 6 5 16 16 C 1.52996 * 109.47100 * 269.68312 * 15 14 6 17 17 H 1.09007 * 109.47521 * 305.00231 * 16 15 14 18 18 C 1.47198 * 109.46960 * 65.00262 * 16 15 14 19 19 N 5.43091 * 110.38836 * 329.00982 * 2 1 3 20 20 C 1.53006 * 109.47102 * 185.00461 * 16 15 14 21 21 C 1.50698 * 109.47184 * 175.00464 * 20 16 15 22 22 H 1.08005 * 119.99819 * 359.97438 * 21 20 16 23 23 C 1.37875 * 120.00046 * 180.02562 * 21 20 16 24 24 N 1.31520 * 119.99809 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99912 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47123 * 90.00333 * 25 23 21 27 27 H 1.48506 * 109.46940 * 210.00455 * 25 23 21 28 28 H 1.48493 * 109.47121 * 329.99876 * 25 23 21 29 29 H 1.08998 * 109.47359 * 299.99957 * 1 2 3 30 30 H 1.08999 * 109.47053 * 60.00476 * 1 2 3 31 31 H 1.08999 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47359 * 240.00043 * 2 1 3 33 33 H 1.09005 * 109.47184 * 119.99964 * 2 1 3 34 34 H 1.08998 * 109.46957 * 59.99797 * 3 2 1 35 35 H 1.09005 * 109.47050 * 300.00046 * 3 2 1 36 36 H 1.08994 * 109.46987 * 59.99736 * 4 3 2 37 37 H 1.08999 * 109.47053 * 299.99524 * 4 3 2 38 38 H 0.97004 * 120.00081 * 359.97438 * 5 4 3 39 39 H 1.07999 * 120.11016 * 0.04801 * 9 8 7 40 40 H 1.07994 * 119.75296 * 179.97438 * 10 9 8 41 41 H 1.08001 * 119.78081 * 180.02562 * 11 10 9 42 42 H 1.08003 * 120.06831 * 179.97438 * 12 11 10 43 43 H 1.09004 * 109.46648 * 149.68932 * 15 14 6 44 44 H 1.08995 * 109.47488 * 29.68600 * 15 14 6 45 45 H 1.09001 * 109.47002 * 294.99868 * 20 16 15 46 46 H 1.08993 * 109.46955 * 55.00306 * 20 16 15 47 47 H 0.97004 * 119.99097 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.4141 3.0757 0.0001 7 7 6.3498 2.1592 -0.0033 8 6 7.5716 2.7544 0.0042 9 6 8.8791 2.2622 0.0093 10 6 9.9400 3.1397 0.0172 11 6 9.7207 4.5094 0.0193 12 6 8.4356 5.0113 0.0141 13 6 7.3552 4.1421 0.0062 14 7 5.9811 4.3178 0.0001 15 6 5.2688 5.5980 -0.0004 16 6 5.0285 6.0473 -1.4431 17 1 5.9783 6.0781 -1.9771 18 6 4.1222 5.0971 -2.1083 19 7 3.4220 4.3640 -2.6211 20 6 4.3970 7.4410 -1.4448 21 6 4.2731 7.9346 -2.8632 22 1 4.6113 7.3163 -3.6816 23 6 3.7290 9.1759 -3.1161 24 7 3.6213 9.6069 -4.3540 25 14 3.1447 10.2455 -1.7005 26 1 4.2626 11.1053 -1.2355 27 1 2.0197 11.1005 -2.1576 28 1 2.6870 9.3812 -0.5831 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9329 0.9288 -0.8908 37 1 3.9337 0.9286 0.8891 38 1 3.4279 3.5610 0.0003 39 1 9.0570 1.1970 0.0066 40 1 10.9505 2.7588 0.0215 41 1 10.5614 5.1873 0.0252 42 1 8.2715 6.0788 0.0162 43 1 5.8672 6.3469 0.5184 44 1 4.3117 5.4816 0.5080 45 1 3.4079 7.3922 -0.9894 46 1 5.0259 8.1254 -0.8755 47 1 3.2381 10.4801 -4.5318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875933597.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:48 Heat of formation + Delta-G solvation = 69.335867 kcal Electronic energy + Delta-G solvation = -27226.527241 eV Core-core repulsion = 23601.710901 eV Total energy + Delta-G solvation = -3624.816340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.01105 -39.00336 -38.33590 -37.35054 -36.05755 -34.99598 -34.83028 -33.34074 -31.15508 -30.39498 -29.12729 -28.63151 -25.65564 -24.64568 -23.43321 -23.31359 -22.67746 -22.07057 -21.15677 -19.12312 -18.90979 -18.47869 -17.82257 -17.22538 -16.98909 -16.42708 -16.32260 -16.06539 -15.33376 -15.23581 -15.18678 -14.82396 -14.67285 -14.61780 -14.46829 -14.41693 -14.05704 -13.69719 -13.34182 -13.25317 -13.11287 -13.03268 -12.72717 -12.60654 -12.44388 -12.28005 -12.19909 -12.10091 -12.00625 -11.96362 -11.70834 -11.57175 -11.46096 -11.15455 -10.76194 -10.74883 -10.52446 -9.01518 -8.41682 -8.26720 -6.34288 0.24732 0.69634 1.26444 1.43349 1.46161 1.55800 1.75985 1.85112 2.03045 2.31137 2.39746 2.98369 3.08495 3.11847 3.43294 3.76014 3.79419 3.81917 3.95166 4.04114 4.15965 4.23824 4.27400 4.40822 4.43549 4.51772 4.56865 4.58922 4.62953 4.66411 4.73500 4.87689 4.88645 4.95583 4.98570 5.11603 5.16730 5.27760 5.30254 5.34356 5.38098 5.42123 5.58386 5.68098 5.74570 5.77404 5.93567 6.20522 6.24652 6.56249 6.61463 6.74439 7.16927 7.30555 8.90355 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.004570 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.945347 B = 6125.982203 C = 9333.949707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.154 3.846 5 N -0.706 5.706 6 C 0.539 3.461 7 N -0.582 5.582 8 C 0.046 3.954 9 C -0.106 4.106 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.106 4.106 13 C 0.027 3.973 14 N -0.514 5.514 15 C 0.122 3.878 16 C 0.008 3.992 17 H 0.107 0.893 18 C 0.230 3.770 19 N -0.476 5.476 20 C 0.003 3.997 21 C -0.534 4.534 22 H 0.021 0.979 23 C 0.004 3.996 24 N -0.955 5.955 25 Si 0.950 3.050 26 H -0.257 1.257 27 H -0.298 1.298 28 H -0.229 1.229 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.111 0.889 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -12.228 17.394 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.030 3.970 5 N -0.348 5.348 6 C 0.183 3.817 7 N -0.315 5.315 8 C -0.071 4.071 9 C -0.126 4.126 10 C -0.136 4.136 11 C -0.138 4.138 12 C -0.127 4.127 13 C -0.079 4.079 14 N -0.212 5.212 15 C -0.001 4.001 16 C -0.015 4.015 17 H 0.124 0.876 18 C -0.087 4.087 19 N -0.153 5.153 20 C -0.036 4.036 21 C -0.572 4.572 22 H 0.040 0.960 23 C -0.193 4.193 24 N -0.595 5.595 25 Si 0.773 3.227 26 H -0.181 1.181 27 H -0.225 1.225 28 H -0.152 1.152 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.245 0.755 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.892 -14.154 16.516 22.097 hybrid contribution -0.518 1.999 -0.616 2.155 sum 3.374 -12.156 15.900 20.297 Atomic orbital electron populations 1.21756 0.94894 1.02319 1.01879 1.21390 0.96556 0.94707 1.02739 1.21779 0.92609 0.99123 1.02749 1.21240 0.94367 0.80057 1.01330 1.43534 0.99162 1.09702 1.82403 1.19679 0.87316 0.80845 0.93863 1.70612 0.97559 1.29139 1.34189 1.19266 0.93002 0.90234 1.04569 1.20383 0.88621 1.00550 1.03070 1.21186 0.98995 0.93095 1.00327 1.21203 0.96010 0.95841 1.00796 1.20315 0.90061 0.99269 1.03068 1.18926 0.83343 0.96619 1.09032 1.45204 1.04854 1.05860 1.65280 1.22108 0.99740 0.83586 0.94661 1.19459 0.95835 0.91691 0.94534 0.87563 1.29509 0.93541 0.92495 0.93113 1.81053 1.11783 1.13151 1.09280 1.19568 0.97876 0.90080 0.96106 1.21290 1.41166 1.02045 0.92689 0.96031 1.26068 0.95188 0.99478 0.98518 1.70105 1.46743 1.20490 1.22138 0.85669 0.78434 0.78901 0.79735 1.18094 1.22495 1.15164 0.92091 0.93457 0.91620 0.92187 0.90542 0.90148 0.92655 0.93783 0.91226 0.75476 0.85506 0.82819 0.82508 0.83939 0.83494 0.87081 0.94204 0.91001 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.89 5.93 30.59 0.18 -1.71 16 3 C -0.12 -2.42 5.33 30.59 0.16 -2.26 16 4 C 0.15 3.68 5.94 86.38 0.51 4.19 16 5 N -0.71 -19.04 5.23 -349.38 -1.83 -20.87 16 6 C 0.54 16.73 7.81 260.52 2.03 18.76 16 7 N -0.58 -20.03 10.86 -190.36 -2.07 -22.10 16 8 C 0.05 1.48 7.22 39.40 0.28 1.76 16 9 C -0.11 -2.75 10.10 22.49 0.23 -2.53 16 10 C -0.12 -2.32 10.01 22.25 0.22 -2.10 16 11 C -0.12 -2.28 10.03 22.32 0.22 -2.05 16 12 C -0.11 -2.42 10.04 22.31 0.22 -2.19 16 13 C 0.03 0.77 6.87 38.72 0.27 1.04 16 14 N -0.51 -14.34 2.69 -518.01 -1.39 -15.73 16 15 C 0.12 2.78 5.34 86.38 0.46 3.24 16 16 C 0.01 0.24 2.42 -12.60 -0.03 0.21 16 17 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 18 C 0.23 8.83 11.91 89.44 1.06 9.90 16 19 N -0.48 -19.99 18.53 20.01 0.37 -19.62 16 20 C 0.00 0.10 3.49 29.85 0.10 0.20 16 21 C -0.53 -27.64 9.15 25.60 0.23 -27.41 16 22 H 0.02 1.30 7.84 -2.91 -0.02 1.27 16 23 C 0.00 0.24 5.47 84.65 0.46 0.70 16 24 N -0.95 -57.79 13.96 21.45 0.30 -57.49 16 25 Si 0.95 38.92 27.47 68.60 1.88 40.80 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.23 -8.01 6.54 99.48 0.65 -7.36 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.41 10.35 6.86 -92.71 -0.64 9.71 16 39 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.15 2.37 8.14 -2.38 -0.02 2.35 16 44 H 0.11 2.11 7.43 -2.39 -0.02 2.09 16 45 H 0.04 1.39 7.20 -2.39 -0.02 1.38 16 46 H 0.07 2.21 7.57 -2.39 -0.02 2.19 16 47 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -73.98 393.45 4.89 -69.08 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.28 Total: 27.69 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 7.35 Total: -1.77 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -4.62 Total: -135.81 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.88 Total: 40.80 kcal Total: -73.98 4.89 -69.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875933597.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.421 kcal (2) G-P(sol) polarization free energy of solvation -73.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds