Wall clock time and date at job start Tue Mar 31 2020 15:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.53004 * 109.46961 * 240.00132 * 2 1 3 5 5 C 1.50694 * 109.47289 * 59.99714 * 4 2 1 6 6 H 1.08005 * 120.00072 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00353 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99721 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00424 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46729 * 60.00198 * 9 7 5 11 11 H 1.48504 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47059 * 300.00267 * 9 7 5 13 13 C 1.52998 * 109.47116 * 119.99880 * 2 1 3 14 14 N 1.46898 * 109.47466 * 299.99940 * 13 2 1 15 15 C 1.46898 * 111.00197 * 180.02562 * 14 13 2 16 16 C 1.50703 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.38733 * 120.40290 * 94.99767 * 16 15 14 18 18 C 1.38680 * 118.54655 * 180.30332 * 17 16 15 19 19 N 1.32198 * 119.19619 * 359.43534 * 18 17 16 20 20 C 1.32552 * 120.74099 * 0.57698 * 19 18 17 21 21 C 1.48406 * 119.20948 * 179.72289 * 20 19 18 22 22 C 1.39270 * 119.72273 * 359.97438 * 21 20 19 23 23 C 1.38483 * 119.07108 * 179.97438 * 22 21 20 24 24 C 1.38719 * 118.49563 * 0.02562 * 23 22 21 25 25 C 1.38359 * 119.35252 * 0.02562 * 24 23 22 26 26 N 1.31676 * 120.88954 * 359.71604 * 25 24 23 27 27 N 1.32160 * 120.40519 * 275.02428 * 16 15 14 28 28 H 1.08998 * 109.47208 * 299.99810 * 1 2 3 29 29 H 1.08994 * 109.47707 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46958 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46848 * 299.99932 * 3 2 1 33 33 H 1.08998 * 109.46995 * 60.00060 * 3 2 1 34 34 H 1.08997 * 109.46843 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46712 * 299.99628 * 4 2 1 36 36 H 0.96996 * 119.99796 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46888 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47277 * 60.00370 * 13 2 1 39 39 H 1.00901 * 111.00080 * 56.04417 * 14 13 2 40 40 H 1.09004 * 109.47225 * 59.99933 * 15 14 13 41 41 H 1.09000 * 109.47242 * 300.00214 * 15 14 13 42 42 H 1.08002 * 120.72344 * 0.02562 * 17 16 15 43 43 H 1.08002 * 120.40071 * 179.72794 * 18 17 16 44 44 H 1.08007 * 120.46596 * 0.02562 * 22 21 20 45 45 H 1.07998 * 120.75332 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.32174 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.55148 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7994 -5.2566 11 1 1.7438 -0.3008 -6.4697 12 1 -0.2361 0.3994 -5.2576 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.5013 0.0428 4.8772 17 6 0.3338 -0.3700 5.5025 18 6 -0.1137 0.3403 6.6063 19 7 0.5873 1.3764 7.0339 20 6 1.6992 1.7447 6.4134 21 6 2.4563 2.9168 6.9188 22 6 1.9909 3.6115 8.0325 23 6 2.7083 4.7028 8.4930 24 6 3.8681 5.0631 7.8226 25 6 4.2713 4.3281 6.7218 26 7 3.5726 3.2914 6.3084 27 7 2.1512 1.0908 5.3524 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2492 36 1 2.8614 -1.8822 -4.7336 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7489 1.2493 39 1 0.5438 0.0414 2.4402 40 1 3.1118 -0.6940 3.6869 41 1 1.6588 -1.7221 3.6873 42 1 -0.2170 -1.2232 5.1349 43 1 -1.0214 0.0478 7.1132 44 1 1.0837 3.3029 8.5307 45 1 2.3725 5.2608 9.3545 46 1 4.4506 5.9090 8.1566 47 1 5.1739 4.6055 6.1978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883286707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:25 Heat of formation + Delta-G solvation = 77.972711 kcal Electronic energy + Delta-G solvation = -26290.397036 eV Core-core repulsion = 22665.955217 eV Total energy + Delta-G solvation = -3624.441818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37374 -40.06475 -37.72995 -35.29087 -33.70554 -33.12812 -32.62410 -32.00481 -30.58522 -27.58537 -26.66197 -26.29412 -25.45755 -24.75209 -23.79044 -22.91949 -22.25976 -21.67762 -18.20047 -17.97946 -17.55938 -16.48247 -16.19033 -16.01060 -15.97440 -15.51229 -15.24858 -14.80315 -14.72806 -14.24192 -14.11247 -13.86773 -13.75019 -13.42822 -13.14872 -12.80183 -12.58059 -12.15189 -12.07335 -11.92910 -11.69504 -11.16312 -10.94657 -10.87116 -10.84885 -10.75824 -10.46382 -10.43321 -10.24052 -10.12808 -10.08196 -9.70013 -9.66048 -9.36129 -9.03576 -8.97160 -8.82284 -8.29192 -8.14974 -5.93988 -3.93959 0.05536 0.89274 0.98552 1.25060 3.19820 3.29479 3.36481 3.40932 3.43449 3.70865 3.84931 4.19548 4.42523 4.49819 4.54270 4.61727 4.66387 4.74848 4.79230 4.86506 4.89772 5.19354 5.27871 5.41728 5.47873 5.49702 5.59730 5.72061 5.75524 5.80431 5.82831 5.99401 6.11396 6.22942 6.32368 6.34105 6.51858 6.70325 6.79822 6.82895 6.86624 7.17462 7.22946 7.29972 7.36907 7.59087 7.64806 7.72449 7.87678 7.94471 8.06274 8.50692 9.11026 9.68607 11.17639 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002253 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.290388 B =12424.479815 C =13372.403418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.072 3.928 14 N -0.675 5.675 15 C 0.104 3.896 16 C 0.187 3.813 17 C -0.220 4.220 18 C 0.149 3.851 19 N -0.513 5.513 20 C 0.357 3.643 21 C 0.173 3.827 22 C -0.125 4.125 23 C -0.085 4.085 24 C -0.160 4.160 25 C 0.098 3.902 26 N -0.437 5.437 27 N -0.457 5.457 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.016 0.984 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.338 0.662 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.149 0.851 43 H 0.173 0.827 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 7.187 27.541 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.056 4.056 14 N -0.307 5.307 15 C -0.026 4.026 16 C 0.039 3.961 17 C -0.243 4.243 18 C -0.017 4.017 19 N -0.228 5.228 20 C 0.090 3.910 21 C 0.035 3.965 22 C -0.147 4.147 23 C -0.111 4.111 24 C -0.180 4.180 25 C -0.061 4.061 26 N -0.146 5.146 27 N -0.170 5.170 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.167 0.833 43 H 0.190 0.810 44 H 0.166 0.834 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.401 7.798 26.989 28.127 hybrid contribution -1.660 -0.697 -0.534 1.877 sum -3.061 7.102 26.454 27.562 Atomic orbital electron populations 1.21776 0.96155 1.00324 1.00405 1.20630 0.94654 0.96234 0.94257 1.21596 0.99931 0.95683 1.00122 1.19119 0.96192 0.94927 0.90083 1.21191 1.30812 1.11872 0.90609 0.92376 1.25013 0.95426 0.95139 0.99034 1.69956 1.37238 1.23192 1.23372 0.86724 0.79103 0.79861 0.82695 1.20306 1.21457 1.20396 1.22157 1.00161 0.94586 0.88745 1.60494 1.16232 1.53714 1.00308 1.20874 1.02048 0.93438 0.86195 1.21812 0.89875 0.90083 0.94296 1.22951 0.98868 1.03501 0.98982 1.23127 0.97523 0.88801 0.92271 1.68141 1.06951 1.15926 1.31735 1.20798 0.88796 0.93013 0.88356 1.18733 0.92028 0.92936 0.92812 1.22144 1.01132 0.95228 0.96166 1.21582 0.94303 0.95824 0.99391 1.22363 0.97536 1.01135 0.97007 1.22870 0.98781 0.90414 0.94011 1.67597 1.04635 1.13691 1.28706 1.68338 1.32581 1.05856 1.10237 0.94976 0.91651 0.94047 0.94036 0.92749 0.93933 0.96585 0.96896 0.93127 0.91120 0.95566 0.84310 0.88645 0.93194 0.83317 0.81023 0.83434 0.84288 0.84395 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 3 C -0.12 -2.35 8.06 37.16 0.30 -2.05 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.93 7.65 -34.45 -0.26 -14.19 16 6 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.23 4.65 -3.83 -0.02 1.21 16 14 N -0.67 -10.06 5.70 -115.06 -0.66 -10.72 16 15 C 0.10 1.32 6.04 -4.98 -0.03 1.29 16 16 C 0.19 2.38 6.34 -82.27 -0.52 1.85 16 17 C -0.22 -2.10 9.84 -39.24 -0.39 -2.49 16 18 C 0.15 1.35 11.30 -17.23 -0.19 1.16 16 19 N -0.51 -5.97 9.43 -11.13 -0.10 -6.08 16 20 C 0.36 4.93 7.57 -156.96 -1.19 3.74 16 21 C 0.17 2.23 6.75 -82.95 -0.56 1.67 16 22 C -0.13 -1.21 9.60 -39.11 -0.38 -1.58 16 23 C -0.09 -0.62 10.17 -39.31 -0.40 -1.02 16 24 C -0.16 -1.14 10.11 -39.36 -0.40 -1.54 16 25 C 0.10 0.95 11.18 -17.57 -0.20 0.75 16 26 N -0.44 -5.90 10.03 -9.77 -0.10 -6.00 16 27 N -0.46 -6.86 10.03 -7.38 -0.07 -6.94 16 28 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 33 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.34 4.77 6.76 -39.29 -0.27 4.51 16 40 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.53 8.06 -51.93 -0.42 0.11 16 42 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.15 1.24 7.50 -52.48 -0.39 0.85 16 45 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -33.70 387.58 -10.63 -44.32 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.01 Total: 1.36 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -4.24 Total: -12.34 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.20 Total: -55.93 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.70 -10.63 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883286707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.296 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds