Wall clock time and date at job start Tue Mar 31 2020 15:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.53004 * 109.46961 * 240.00132 * 2 1 3 5 5 C 1.50694 * 109.47289 * 59.99714 * 4 2 1 6 6 H 1.08005 * 120.00072 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00353 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99721 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00424 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46729 * 60.00198 * 9 7 5 11 11 H 1.48504 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47059 * 300.00267 * 9 7 5 13 13 C 1.52998 * 109.47116 * 119.99880 * 2 1 3 14 14 N 1.46898 * 109.47466 * 299.99940 * 13 2 1 15 15 C 1.46898 * 111.00197 * 180.02562 * 14 13 2 16 16 C 1.50703 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.38733 * 120.40290 * 94.99767 * 16 15 14 18 18 C 1.38680 * 118.54655 * 180.30332 * 17 16 15 19 19 N 1.32198 * 119.19619 * 359.43534 * 18 17 16 20 20 C 1.32552 * 120.74099 * 0.57698 * 19 18 17 21 21 C 1.48406 * 119.20948 * 179.72289 * 20 19 18 22 22 C 1.39270 * 119.72273 * 359.97438 * 21 20 19 23 23 C 1.38483 * 119.07108 * 179.97438 * 22 21 20 24 24 C 1.38719 * 118.49563 * 0.02562 * 23 22 21 25 25 C 1.38359 * 119.35252 * 0.02562 * 24 23 22 26 26 N 1.31676 * 120.88954 * 359.71604 * 25 24 23 27 27 N 1.32160 * 120.40519 * 275.02428 * 16 15 14 28 28 H 1.08998 * 109.47208 * 299.99810 * 1 2 3 29 29 H 1.08994 * 109.47707 * 60.00060 * 1 2 3 30 30 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46958 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46848 * 299.99932 * 3 2 1 33 33 H 1.08998 * 109.46995 * 60.00060 * 3 2 1 34 34 H 1.08997 * 109.46843 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.46712 * 299.99628 * 4 2 1 36 36 H 0.96996 * 119.99796 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46888 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47277 * 60.00370 * 13 2 1 39 39 H 1.00901 * 111.00080 * 56.04417 * 14 13 2 40 40 H 1.09004 * 109.47225 * 59.99933 * 15 14 13 41 41 H 1.09000 * 109.47242 * 300.00214 * 15 14 13 42 42 H 1.08002 * 120.72344 * 0.02562 * 17 16 15 43 43 H 1.08002 * 120.40071 * 179.72794 * 18 17 16 44 44 H 1.08007 * 120.46596 * 0.02562 * 22 21 20 45 45 H 1.07998 * 120.75332 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.32174 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.55148 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7319 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7994 -5.2566 11 1 1.7438 -0.3008 -6.4697 12 1 -0.2361 0.3994 -5.2576 13 6 2.0400 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.5013 0.0428 4.8772 17 6 0.3338 -0.3700 5.5025 18 6 -0.1137 0.3403 6.6063 19 7 0.5873 1.3764 7.0339 20 6 1.6992 1.7447 6.4134 21 6 2.4563 2.9168 6.9188 22 6 1.9909 3.6115 8.0325 23 6 2.7083 4.7028 8.4930 24 6 3.8681 5.0631 7.8226 25 6 4.2713 4.3281 6.7218 26 7 3.5726 3.2914 6.3084 27 7 2.1512 1.0908 5.3524 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 -0.7216 -1.2491 35 1 1.6766 -1.7489 -1.2492 36 1 2.8614 -1.8822 -4.7336 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7489 1.2493 39 1 0.5438 0.0414 2.4402 40 1 3.1118 -0.6940 3.6869 41 1 1.6588 -1.7221 3.6873 42 1 -0.2170 -1.2232 5.1349 43 1 -1.0214 0.0478 7.1132 44 1 1.0837 3.3029 8.5307 45 1 2.3725 5.2608 9.3545 46 1 4.4506 5.9090 8.1566 47 1 5.1739 4.6055 6.1978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883286707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:24 Heat of formation + Delta-G solvation = 56.447141 kcal Electronic energy + Delta-G solvation = -26291.330454 eV Core-core repulsion = 22665.955217 eV Total energy + Delta-G solvation = -3625.375237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18098 -40.77310 -39.23475 -36.51878 -34.77924 -34.36872 -33.58710 -33.31922 -31.36646 -29.23276 -28.14307 -27.91610 -26.24828 -26.19865 -24.69922 -24.00717 -23.54459 -22.59474 -19.66199 -18.79582 -18.51436 -18.31914 -17.24386 -16.76476 -16.65153 -16.63717 -16.36177 -16.28235 -15.70932 -15.59376 -15.31206 -14.80836 -14.64294 -14.49045 -14.37060 -14.09840 -13.94461 -13.86691 -13.36918 -13.16376 -12.77437 -12.73709 -12.71039 -12.44175 -12.25700 -12.16789 -11.95825 -11.92986 -11.73807 -11.39345 -11.14366 -10.87916 -10.81816 -10.76387 -10.49231 -10.42668 -10.18985 -9.72079 -9.33924 -8.13312 -6.20048 -0.70209 0.07931 0.32927 0.55402 1.40705 1.43026 1.50269 2.43605 2.46386 2.53143 2.89244 3.05290 3.20368 3.32929 3.62597 3.76240 3.84147 4.03660 4.07501 4.13781 4.15056 4.17695 4.22786 4.26592 4.37019 4.44765 4.60489 4.63857 4.75591 4.76903 4.81422 4.85525 4.94278 5.05822 5.15622 5.19311 5.19686 5.21743 5.36092 5.50679 5.53253 5.57041 5.62932 5.71287 5.86368 5.92260 5.97049 6.05111 6.36963 6.44498 6.91516 6.94398 7.14362 7.46842 8.98709 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002253 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.290388 B =12424.479815 C =13372.403418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.106 4.106 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.085 3.915 14 N -0.680 5.680 15 C 0.109 3.891 16 C 0.164 3.836 17 C -0.207 4.207 18 C 0.150 3.850 19 N -0.517 5.517 20 C 0.336 3.664 21 C 0.136 3.864 22 C -0.127 4.127 23 C -0.080 4.080 24 C -0.146 4.146 25 C 0.079 3.921 26 N -0.485 5.485 27 N -0.498 5.498 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.039 0.961 33 H 0.057 0.943 34 H -0.017 1.017 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.345 0.655 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.183 0.817 43 H 0.217 0.783 44 H 0.156 0.844 45 H 0.177 0.823 46 H 0.176 0.824 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 8.455 29.671 31.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.054 4.054 3 C -0.163 4.163 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.043 4.043 14 N -0.313 5.313 15 C -0.020 4.020 16 C 0.017 3.983 17 C -0.230 4.230 18 C -0.016 4.016 19 N -0.232 5.232 20 C 0.070 3.930 21 C -0.001 4.001 22 C -0.149 4.149 23 C -0.105 4.105 24 C -0.166 4.166 25 C -0.080 4.080 26 N -0.195 5.195 27 N -0.212 5.212 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.002 0.998 35 H 0.008 0.992 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.165 0.835 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.201 0.799 43 H 0.233 0.767 44 H 0.174 0.826 45 H 0.195 0.805 46 H 0.193 0.807 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.480 9.070 29.133 30.710 hybrid contribution -0.982 -1.064 -1.091 1.813 sum -4.462 8.006 28.041 29.501 Atomic orbital electron populations 1.21675 0.94441 1.00786 1.00972 1.20481 0.95967 0.95629 0.93312 1.21485 0.98996 0.95803 1.00029 1.18993 0.94057 0.94202 0.92422 1.21569 1.30319 1.11875 0.91506 0.91819 1.25906 0.95740 0.95940 1.02508 1.70098 1.38728 1.24862 1.24073 0.85646 0.78992 0.78687 0.78604 1.19620 1.21275 1.19174 1.21829 0.99229 0.94672 0.88614 1.60336 1.16717 1.54053 1.00230 1.20827 1.01112 0.94712 0.85356 1.21882 0.91342 0.90316 0.94789 1.23267 0.97433 1.03937 0.98332 1.23934 0.98174 0.87534 0.91941 1.68216 1.06526 1.16862 1.31645 1.21124 0.89737 0.93632 0.88543 1.18995 0.92689 0.93927 0.94471 1.22312 1.01606 0.95678 0.95276 1.22060 0.93657 0.94849 0.99957 1.22754 0.97386 1.01106 0.95348 1.23301 0.99209 0.90199 0.95299 1.67498 1.05825 1.15679 1.30518 1.68254 1.34152 1.07276 1.11558 0.91881 0.93522 0.93638 0.95383 0.94236 0.92365 0.99837 0.99159 0.93158 0.92584 0.94871 0.83469 0.90451 0.90463 0.79942 0.76676 0.82640 0.80523 0.80655 0.80665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 2 C -0.05 -2.16 0.60 -52.18 -0.03 -2.20 16 3 C -0.11 -4.33 8.06 71.98 0.58 -3.75 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.51 -28.81 7.65 25.60 0.20 -28.61 16 6 H 0.06 3.43 5.68 -2.91 -0.02 3.42 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 9 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 C 0.09 2.94 4.65 86.30 0.40 3.34 16 14 N -0.68 -19.74 5.70 -517.93 -2.95 -22.69 16 15 C 0.11 2.70 6.04 85.56 0.52 3.22 16 16 C 0.16 4.05 6.34 42.63 0.27 4.32 16 17 C -0.21 -3.44 9.84 22.49 0.22 -3.22 16 18 C 0.15 2.34 11.30 84.74 0.96 3.30 16 19 N -0.52 -11.54 9.43 -189.12 -1.78 -13.32 16 20 C 0.34 9.45 7.57 137.58 1.04 10.49 16 21 C 0.14 3.61 6.75 41.98 0.28 3.89 16 22 C -0.13 -2.35 9.60 22.58 0.22 -2.14 16 23 C -0.08 -0.96 10.17 22.44 0.23 -0.73 16 24 C -0.15 -1.76 10.11 22.41 0.23 -1.54 16 25 C 0.08 1.51 11.18 84.75 0.95 2.46 16 26 N -0.49 -13.67 10.03 -184.83 -1.85 -15.52 16 27 N -0.50 -15.39 10.03 -177.26 -1.78 -17.16 16 28 H 0.06 1.87 6.57 -2.39 -0.02 1.86 16 29 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.70 6.62 -2.39 -0.02 1.68 16 33 H 0.06 2.18 7.60 -2.39 -0.02 2.16 16 34 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.35 9.05 6.76 -89.69 -0.61 8.45 16 40 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 42 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.22 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.16 2.46 7.50 -2.91 -0.02 2.44 16 45 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 46 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 47 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -77.72 387.58 1.52 -76.20 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.37 Total: 15.31 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 7.21 Total: -12.50 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -8.08 Total: -126.00 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -77.72 1.52 -76.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883286707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.645 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds