Wall clock time and date at job start Tue Mar 31 2020 14:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99929 * 2 1 4 4 C 1.53003 * 109.47295 * 303.60033 * 3 2 1 5 5 N 1.46498 * 109.46707 * 304.90229 * 4 3 2 6 6 C 1.34782 * 119.99721 * 185.12059 * 5 4 3 7 7 O 1.21584 * 119.99774 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99864 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99978 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47449 * 175.61939 * 9 8 6 11 11 C 1.50699 * 115.54941 * 65.07999 * 10 9 8 12 12 H 1.08005 * 120.00183 * 264.71414 * 11 10 9 13 13 C 1.37876 * 120.00277 * 84.71161 * 11 10 9 14 14 N 1.31520 * 119.99563 * 1.96932 * 13 11 10 15 15 Si 1.86804 * 120.00585 * 181.96918 * 13 11 10 16 16 H 1.48500 * 109.46660 * 59.99810 * 15 13 11 17 17 H 1.48495 * 109.47285 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46879 * 300.00010 * 15 13 11 19 19 C 1.52998 * 117.49904 * 279.41043 * 10 9 8 20 20 C 1.53005 * 117.50325 * 210.74967 * 10 9 8 21 21 C 1.53005 * 109.47016 * 183.59952 * 3 2 1 22 22 C 1.53002 * 109.47055 * 179.97438 * 21 3 2 23 23 C 1.53006 * 109.46981 * 60.00167 * 22 21 3 24 24 C 1.53005 * 109.47090 * 299.99812 * 23 22 21 25 25 C 1.53002 * 109.47055 * 60.00233 * 24 23 22 26 26 H 1.09000 * 109.47156 * 185.33204 * 1 2 3 27 27 H 1.09010 * 109.47070 * 305.32997 * 1 2 3 28 28 H 1.09002 * 109.47409 * 65.32742 * 1 2 3 29 29 H 1.08999 * 109.46882 * 64.90332 * 4 3 2 30 30 H 1.08998 * 109.46786 * 184.90592 * 4 3 2 31 31 H 0.97002 * 120.00464 * 5.13238 * 5 4 3 32 32 H 0.96995 * 119.99919 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47151 * 295.61863 * 9 8 6 34 34 H 1.09006 * 109.47612 * 55.61888 * 9 8 6 35 35 H 0.97005 * 119.99553 * 185.01372 * 14 13 11 36 36 H 1.08995 * 117.49752 * 0.02562 * 19 10 9 37 37 H 1.09003 * 117.49433 * 145.02137 * 19 10 9 38 38 H 1.08990 * 117.49873 * 214.98330 * 20 10 9 39 39 H 1.09002 * 117.49300 * 359.97438 * 20 10 9 40 40 H 1.08999 * 109.46724 * 60.00338 * 21 3 2 41 41 H 1.09003 * 109.46733 * 299.99860 * 21 3 2 42 42 H 1.09000 * 109.46694 * 179.97438 * 22 21 3 43 43 H 1.08994 * 109.47178 * 300.00426 * 22 21 3 44 44 H 1.09000 * 109.46831 * 59.99678 * 23 22 21 45 45 H 1.08996 * 109.47239 * 179.97438 * 23 22 21 46 46 H 1.08991 * 109.46999 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.46733 * 300.00266 * 24 23 22 48 48 H 1.08994 * 109.47178 * 59.99573 * 25 24 23 49 49 H 1.09000 * 109.46694 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.5590 2.4440 -1.2015 5 7 1.9571 1.7545 -2.4312 6 6 1.5759 2.2398 -3.6295 7 8 0.9022 3.2500 -3.6898 8 7 1.9417 1.6051 -4.7608 9 6 1.5280 2.1329 -6.0632 10 6 2.1609 1.2963 -7.1770 11 6 1.7064 -0.1386 -7.2503 12 1 2.2836 -0.9133 -6.7672 13 6 0.5538 -0.4627 -7.9339 14 7 -0.1282 0.4750 -8.5548 15 14 -0.0394 -2.2335 -7.9785 16 1 -0.2993 -2.7034 -6.5940 17 1 -1.2910 -2.3165 -8.7732 18 1 1.0012 -3.0884 -8.6043 19 6 3.6148 1.5966 -7.5468 20 6 2.4839 2.0032 -8.4949 21 6 3.7396 1.9406 -0.0906 22 6 4.0837 3.4314 -0.0912 23 6 3.5734 4.0731 1.2006 24 6 2.0559 3.9001 1.2912 25 6 1.7118 2.4092 1.2918 26 1 -0.3633 -1.0232 0.0955 27 1 -0.3634 0.5943 0.8385 28 1 -0.3634 0.4290 -0.9338 29 1 0.4754 2.3967 -1.0928 30 1 1.8741 3.4863 -1.2511 31 1 2.4948 0.9486 -2.3831 32 1 2.4789 0.7989 -4.7126 33 1 0.4421 2.0859 -6.1460 34 1 1.8550 3.1685 -6.1563 35 1 -0.9763 0.2609 -8.9739 36 1 4.1205 2.3899 -6.9963 37 1 4.2425 0.7563 -7.8435 38 1 2.3681 1.4302 -9.4148 39 1 2.2451 3.0641 -8.5686 40 1 4.1030 1.4838 -1.0111 41 1 4.2119 1.4586 0.7655 42 1 5.1648 3.5546 -0.1553 43 1 3.6113 3.9129 -0.9473 44 1 4.0458 3.5915 2.0568 45 1 3.8189 5.1351 1.2004 46 1 1.6924 4.3568 2.2116 47 1 1.5836 4.3816 0.4349 48 1 2.1841 1.9277 2.1479 49 1 0.6306 2.2860 1.3559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884313857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:22 Heat of formation + Delta-G solvation = -28.786807 kcal Electronic energy + Delta-G solvation = -26649.260992 eV Core-core repulsion = 23123.340934 eV Total energy + Delta-G solvation = -3525.920058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99764 -38.75913 -36.69889 -34.29610 -33.18855 -31.93833 -31.48838 -30.93079 -28.89822 -26.91782 -25.62230 -24.56206 -22.95402 -22.50077 -21.15597 -20.20070 -19.34795 -19.17395 -17.59832 -17.10125 -16.27369 -15.69297 -15.33760 -15.10067 -14.70105 -14.54328 -14.41305 -14.29770 -13.90915 -13.70590 -13.61855 -13.34133 -13.22544 -12.94411 -12.72102 -12.54279 -12.44491 -12.01137 -11.80247 -11.58486 -11.52745 -11.37686 -10.95117 -10.91776 -10.91529 -10.56783 -10.52660 -10.42918 -10.21999 -9.80727 -9.69104 -9.43315 -9.01516 -8.79872 -8.45066 -8.19709 -7.95400 -7.80475 -6.05356 -4.14196 1.47673 2.35990 3.26042 3.28846 3.34520 3.36107 3.83601 4.24692 4.27421 4.37783 4.56214 4.74971 4.86186 4.88883 4.93722 4.99322 5.07820 5.10453 5.20838 5.23806 5.28979 5.40356 5.42823 5.54871 5.62567 5.64329 5.71991 5.75962 5.82637 5.86529 5.95113 5.99614 6.06816 6.19548 6.37829 6.50957 6.62769 6.73487 6.80329 6.89195 7.14180 7.37500 7.46175 7.49135 7.66661 7.83279 8.37018 8.71349 8.87026 9.24801 9.52809 11.02712 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.003343 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.765106 B = 8374.765093 C = 9378.606564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.251 6.251 3 C -0.035 4.035 4 C 0.148 3.852 5 N -0.748 5.748 6 C 0.698 3.302 7 O -0.608 6.608 8 N -0.720 5.720 9 C 0.183 3.817 10 C 0.026 3.974 11 C -0.498 4.498 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.211 4.211 20 C -0.143 4.143 21 C -0.092 4.092 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.104 4.104 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.399 0.601 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 3.385 20.740 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.020 6.020 3 C -0.145 4.145 4 C 0.021 3.979 5 N -0.407 5.407 6 C 0.398 3.602 7 O -0.488 6.488 8 N -0.372 5.372 9 C 0.060 3.940 10 C 0.026 3.974 11 C -0.535 4.535 12 H 0.077 0.923 13 C -0.130 4.130 14 N -0.511 5.511 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.182 4.182 21 C -0.131 4.131 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.143 4.143 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.235 0.765 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.747 3.387 20.453 21.513 hybrid contribution -0.934 -0.782 -0.083 1.221 sum 4.813 2.604 20.370 21.092 Atomic orbital electron populations 1.23447 0.93965 1.06364 1.05366 1.86749 1.07878 1.09966 1.97448 1.23069 0.99987 0.93398 0.98077 1.21263 0.98246 0.96650 0.81749 1.45186 1.59776 1.31649 1.04049 1.16034 0.80389 0.83350 0.80471 1.90860 1.44500 1.26855 1.86602 1.45130 1.56938 1.30216 1.04904 1.20818 0.99612 0.94106 0.79500 1.19035 0.90992 0.95294 0.92128 1.20315 1.09260 0.90187 1.33783 0.92321 1.24971 0.96881 0.96980 0.94179 1.69989 1.14013 1.32772 1.34365 0.86714 0.78147 0.85337 0.78116 1.20249 1.21315 1.20236 1.23006 0.93163 1.01947 1.06684 1.22474 1.01638 0.98134 0.95924 1.21361 0.91196 0.97386 1.03149 1.21614 1.01125 0.94584 0.98502 1.21544 0.95530 1.00681 0.97896 1.21644 0.96551 0.95516 1.02461 1.21806 1.00968 0.95998 0.95564 0.88185 0.90469 0.89961 0.92379 0.90004 0.76502 0.76980 0.91730 0.94556 0.92870 0.91722 0.90465 0.89633 0.91791 0.90797 0.90922 0.91359 0.91022 0.91918 0.91781 0.91537 0.91233 0.90346 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.83 101.05 0.99 -0.20 16 2 S -0.25 -2.67 20.10 -107.50 -2.16 -4.83 16 3 C -0.04 -0.34 0.43 -90.61 -0.04 -0.38 16 4 C 0.15 1.83 3.53 -4.04 -0.01 1.82 16 5 N -0.75 -10.85 4.94 -65.23 -0.32 -11.18 16 6 C 0.70 13.43 8.57 -86.92 -0.74 12.68 16 7 O -0.61 -13.96 16.34 5.29 0.09 -13.88 16 8 N -0.72 -14.29 5.48 -65.23 -0.36 -14.65 16 9 C 0.18 4.23 5.50 -4.05 -0.02 4.21 16 10 C 0.03 0.62 1.44 -155.66 -0.22 0.40 16 11 C -0.50 -12.87 8.60 -34.44 -0.30 -13.17 16 12 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 13 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 14 N -0.88 -24.43 12.72 55.43 0.71 -23.72 16 15 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.21 -4.43 9.96 -26.69 -0.27 -4.70 16 20 C -0.14 -3.32 9.23 -26.69 -0.25 -3.57 16 21 C -0.09 -0.83 4.61 -26.73 -0.12 -0.95 16 22 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 23 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 24 C -0.12 -0.92 5.65 -26.73 -0.15 -1.07 16 25 C -0.10 -0.83 4.62 -26.73 -0.12 -0.95 16 26 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.08 0.63 6.86 -51.92 -0.36 0.27 16 28 H 0.08 0.93 7.36 -51.92 -0.38 0.55 16 29 H 0.06 0.78 6.98 -51.93 -0.36 0.42 16 30 H 0.08 1.07 4.81 -51.93 -0.25 0.82 16 31 H 0.40 5.26 6.95 -40.82 -0.28 4.97 16 32 H 0.40 7.28 8.35 -40.82 -0.34 6.94 16 33 H 0.06 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.04 0.84 8.09 -51.93 -0.42 0.41 16 35 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.07 0.73 7.29 -51.93 -0.38 0.35 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.52 6.71 -51.93 -0.35 0.17 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -29.65 389.50 -11.27 -40.92 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.41 Total: 11.93 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.66 Total: -6.18 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.03 Total: -49.54 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.16 Total: -4.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.65 -11.27 -40.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.135 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds