Wall clock time and date at job start Tue Mar 31 2020 14:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 102.99929 * 2 1 4 4 C 1.53003 * 109.47295 * 303.60033 * 3 2 1 5 5 N 1.46498 * 109.46707 * 304.90229 * 4 3 2 6 6 C 1.34782 * 119.99721 * 185.12059 * 5 4 3 7 7 O 1.21584 * 119.99774 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99864 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99978 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47449 * 175.61939 * 9 8 6 11 11 C 1.50699 * 115.54941 * 65.07999 * 10 9 8 12 12 H 1.08005 * 120.00183 * 264.71414 * 11 10 9 13 13 C 1.37876 * 120.00277 * 84.71161 * 11 10 9 14 14 N 1.31520 * 119.99563 * 1.96932 * 13 11 10 15 15 Si 1.86804 * 120.00585 * 181.96918 * 13 11 10 16 16 H 1.48500 * 109.46660 * 59.99810 * 15 13 11 17 17 H 1.48495 * 109.47285 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46879 * 300.00010 * 15 13 11 19 19 C 1.52998 * 117.49904 * 279.41043 * 10 9 8 20 20 C 1.53005 * 117.50325 * 210.74967 * 10 9 8 21 21 C 1.53005 * 109.47016 * 183.59952 * 3 2 1 22 22 C 1.53002 * 109.47055 * 179.97438 * 21 3 2 23 23 C 1.53006 * 109.46981 * 60.00167 * 22 21 3 24 24 C 1.53005 * 109.47090 * 299.99812 * 23 22 21 25 25 C 1.53002 * 109.47055 * 60.00233 * 24 23 22 26 26 H 1.09000 * 109.47156 * 185.33204 * 1 2 3 27 27 H 1.09010 * 109.47070 * 305.32997 * 1 2 3 28 28 H 1.09002 * 109.47409 * 65.32742 * 1 2 3 29 29 H 1.08999 * 109.46882 * 64.90332 * 4 3 2 30 30 H 1.08998 * 109.46786 * 184.90592 * 4 3 2 31 31 H 0.97002 * 120.00464 * 5.13238 * 5 4 3 32 32 H 0.96995 * 119.99919 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47151 * 295.61863 * 9 8 6 34 34 H 1.09006 * 109.47612 * 55.61888 * 9 8 6 35 35 H 0.97005 * 119.99553 * 185.01372 * 14 13 11 36 36 H 1.08995 * 117.49752 * 0.02562 * 19 10 9 37 37 H 1.09003 * 117.49433 * 145.02137 * 19 10 9 38 38 H 1.08990 * 117.49873 * 214.98330 * 20 10 9 39 39 H 1.09002 * 117.49300 * 359.97438 * 20 10 9 40 40 H 1.08999 * 109.46724 * 60.00338 * 21 3 2 41 41 H 1.09003 * 109.46733 * 299.99860 * 21 3 2 42 42 H 1.09000 * 109.46694 * 179.97438 * 22 21 3 43 43 H 1.08994 * 109.47178 * 300.00426 * 22 21 3 44 44 H 1.09000 * 109.46831 * 59.99678 * 23 22 21 45 45 H 1.08996 * 109.47239 * 179.97438 * 23 22 21 46 46 H 1.08991 * 109.46999 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.46733 * 300.00266 * 24 23 22 48 48 H 1.08994 * 109.47178 * 59.99573 * 25 24 23 49 49 H 1.09000 * 109.46694 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.5590 2.4440 -1.2015 5 7 1.9571 1.7545 -2.4312 6 6 1.5759 2.2398 -3.6295 7 8 0.9022 3.2500 -3.6898 8 7 1.9417 1.6051 -4.7608 9 6 1.5280 2.1329 -6.0632 10 6 2.1609 1.2963 -7.1770 11 6 1.7064 -0.1386 -7.2503 12 1 2.2836 -0.9133 -6.7672 13 6 0.5538 -0.4627 -7.9339 14 7 -0.1282 0.4750 -8.5548 15 14 -0.0394 -2.2335 -7.9785 16 1 -0.2993 -2.7034 -6.5940 17 1 -1.2910 -2.3165 -8.7732 18 1 1.0012 -3.0884 -8.6043 19 6 3.6148 1.5966 -7.5468 20 6 2.4839 2.0032 -8.4949 21 6 3.7396 1.9406 -0.0906 22 6 4.0837 3.4314 -0.0912 23 6 3.5734 4.0731 1.2006 24 6 2.0559 3.9001 1.2912 25 6 1.7118 2.4092 1.2918 26 1 -0.3633 -1.0232 0.0955 27 1 -0.3634 0.5943 0.8385 28 1 -0.3634 0.4290 -0.9338 29 1 0.4754 2.3967 -1.0928 30 1 1.8741 3.4863 -1.2511 31 1 2.4948 0.9486 -2.3831 32 1 2.4789 0.7989 -4.7126 33 1 0.4421 2.0859 -6.1460 34 1 1.8550 3.1685 -6.1563 35 1 -0.9763 0.2609 -8.9739 36 1 4.1205 2.3899 -6.9963 37 1 4.2425 0.7563 -7.8435 38 1 2.3681 1.4302 -9.4148 39 1 2.2451 3.0641 -8.5686 40 1 4.1030 1.4838 -1.0111 41 1 4.2119 1.4586 0.7655 42 1 5.1648 3.5546 -0.1553 43 1 3.6113 3.9129 -0.9473 44 1 4.0458 3.5915 2.0568 45 1 3.8189 5.1351 1.2004 46 1 1.6924 4.3568 2.2116 47 1 1.5836 4.3816 0.4349 48 1 2.1841 1.9277 2.1479 49 1 0.6306 2.2860 1.3559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884313857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:21 Heat of formation + Delta-G solvation = -45.210798 kcal Electronic energy + Delta-G solvation = -26649.973190 eV Core-core repulsion = 23123.340934 eV Total energy + Delta-G solvation = -3526.632256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21187 -39.92362 -38.48227 -35.51929 -34.89636 -33.94163 -32.27918 -31.72456 -29.67293 -28.41774 -27.41406 -26.06612 -23.64420 -23.21673 -22.93739 -21.72475 -21.21976 -20.05706 -19.07172 -18.11602 -17.85689 -17.09753 -16.71665 -16.42359 -16.05912 -15.78299 -15.64141 -15.44921 -15.20765 -14.82170 -14.58491 -14.41627 -14.32495 -14.20746 -13.93916 -13.68348 -13.49371 -13.35886 -13.10957 -12.91484 -12.79032 -12.67870 -12.46358 -12.38322 -12.06920 -12.01748 -11.61197 -11.47105 -11.29670 -11.21356 -11.08629 -10.93841 -10.58117 -10.42160 -10.25771 -10.01811 -9.57590 -8.68974 -8.08741 -6.21900 0.66188 1.43926 1.44534 1.51166 1.54546 1.84405 2.25741 2.43583 3.20018 3.33575 3.41887 3.55128 3.66696 3.84647 4.08572 4.18004 4.20818 4.26087 4.28315 4.29227 4.39317 4.52820 4.56680 4.57334 4.61745 4.63747 4.67599 4.75775 4.86762 4.91033 5.00547 5.02430 5.04176 5.08430 5.20133 5.21384 5.29774 5.33186 5.34390 5.49930 5.56231 5.58868 5.63996 5.73423 5.79471 6.14713 6.38340 6.85128 7.22970 7.47618 7.68935 8.98919 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.003343 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.765106 B = 8374.765093 C = 9378.606564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.270 6.270 3 C -0.023 4.023 4 C 0.148 3.852 5 N -0.727 5.727 6 C 0.697 3.303 7 O -0.646 6.646 8 N -0.716 5.716 9 C 0.201 3.799 10 C 0.005 3.995 11 C -0.503 4.503 12 H 0.062 0.938 13 C 0.025 3.975 14 N -0.907 5.907 15 Si 0.948 3.052 16 H -0.273 1.273 17 H -0.291 1.291 18 H -0.269 1.269 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.090 4.090 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.100 4.100 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.408 0.592 32 H 0.405 0.595 33 H 0.022 0.978 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.091 0.909 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 2.648 22.916 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.039 6.039 3 C -0.133 4.133 4 C 0.021 3.979 5 N -0.386 5.386 6 C 0.397 3.603 7 O -0.530 6.530 8 N -0.369 5.369 9 C 0.076 3.924 10 C 0.004 3.996 11 C -0.540 4.540 12 H 0.081 0.919 13 C -0.175 4.175 14 N -0.545 5.545 15 Si 0.774 3.226 16 H -0.198 1.198 17 H -0.217 1.217 18 H -0.194 1.194 19 C -0.214 4.214 20 C -0.192 4.192 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.140 4.140 26 H 0.127 0.873 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.246 0.754 32 H 0.241 0.759 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.109 0.891 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.213 2.609 22.672 23.934 hybrid contribution -1.362 -0.530 -0.725 1.631 sum 5.851 2.080 21.947 22.809 Atomic orbital electron populations 1.23458 0.93155 1.07148 1.05008 1.86820 1.08843 1.10876 1.97410 1.23034 1.00298 0.92469 0.97454 1.21390 0.97975 0.96682 0.81817 1.45054 1.58678 1.31550 1.03268 1.16159 0.80008 0.82847 0.81318 1.90833 1.46237 1.28637 1.87248 1.44916 1.57151 1.30573 1.04221 1.20374 0.96943 0.94117 0.80938 1.19047 0.93383 0.94609 0.92533 1.20634 1.09097 0.91351 1.32942 0.91943 1.25678 0.97324 1.00323 0.94200 1.70116 1.14279 1.34534 1.35576 0.85781 0.77513 0.81272 0.78046 1.19839 1.21732 1.19440 1.22987 0.91726 1.02294 1.04365 1.22399 1.03630 0.98114 0.95090 1.21379 0.90502 0.97829 1.03222 1.21594 1.01588 0.94011 0.98452 1.21536 0.95188 1.01067 0.97533 1.21644 0.96824 0.95028 1.02578 1.21814 1.01160 0.96248 0.94732 0.87307 0.88753 0.91959 0.93389 0.90452 0.75412 0.75946 0.95919 0.94747 0.93292 0.89434 0.89677 0.91723 0.91226 0.91777 0.89641 0.90422 0.93142 0.90562 0.91253 0.89963 0.92811 0.89069 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 9.83 113.37 1.11 -1.07 16 2 S -0.27 -5.34 20.10 -56.49 -1.14 -6.47 16 3 C -0.02 -0.40 0.43 -10.79 0.00 -0.40 16 4 C 0.15 3.61 3.53 86.38 0.31 3.91 16 5 N -0.73 -20.87 4.94 -478.53 -2.36 -23.24 16 6 C 0.70 26.99 8.57 179.05 1.53 28.53 16 7 O -0.65 -30.32 16.34 -3.98 -0.07 -30.38 16 8 N -0.72 -28.40 5.48 -478.54 -2.62 -31.02 16 9 C 0.20 9.44 5.50 86.38 0.48 9.91 16 10 C 0.01 0.24 1.44 -52.93 -0.08 0.16 16 11 C -0.50 -25.86 8.60 25.60 0.22 -25.64 16 12 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 13 C 0.03 1.35 5.43 84.65 0.46 1.81 16 14 N -0.91 -51.71 12.72 21.45 0.27 -51.43 16 15 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 C -0.18 -7.12 9.96 30.62 0.30 -6.82 16 20 C -0.15 -7.13 9.23 30.62 0.28 -6.85 16 21 C -0.09 -1.46 4.61 30.60 0.14 -1.32 16 22 C -0.12 -1.79 5.65 30.60 0.17 -1.61 16 23 C -0.12 -1.40 5.92 30.60 0.18 -1.22 16 24 C -0.12 -1.59 5.65 30.60 0.17 -1.41 16 25 C -0.10 -1.38 4.62 30.60 0.14 -1.24 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.06 1.39 7.36 -2.39 -0.02 1.37 16 29 H 0.05 1.29 6.98 -2.39 -0.02 1.28 16 30 H 0.08 2.02 4.81 -2.39 -0.01 2.01 16 31 H 0.41 10.39 6.95 -92.71 -0.64 9.74 16 32 H 0.41 14.56 8.35 -92.71 -0.77 13.79 16 33 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.03 1.60 8.09 -2.38 -0.02 1.59 16 35 H 0.26 14.26 8.32 -92.70 -0.77 13.49 16 36 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.06 1.16 7.29 -2.39 -0.02 1.14 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 0.99 6.32 -2.39 -0.02 0.97 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 0.88 6.54 -2.39 -0.02 0.87 16 48 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 0.92 6.71 -2.39 -0.02 0.91 16 Total: -1.00 -64.10 389.50 1.07 -63.04 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.47 Total: 38.12 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.42 Total: -3.25 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.71 Total: -105.69 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.07 Total: -30.38 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.14 Total: -6.47 kcal Total: -64.10 1.07 -63.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.827 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds