Wall clock time and date at job start Tue Mar 31 2020 14:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30619 * 125.90864 * 2 1 4 4 N 1.39960 * 108.84889 * 179.97438 * 3 2 1 5 5 C 1.40134 * 125.85104 * 180.02562 * 4 3 2 6 6 C 1.38871 * 120.07585 * 129.14489 * 5 4 3 7 7 C 1.38087 * 119.93927 * 179.97438 * 6 5 4 8 8 C 1.38306 * 120.06299 * 359.97438 * 7 6 5 9 9 C 1.38257 * 120.14115 * 0.02562 * 8 7 6 10 10 C 1.38142 * 120.06216 * 359.70015 * 9 8 7 11 11 C 1.50700 * 120.03117 * 180.30050 * 10 9 8 12 12 C 1.35153 * 108.30536 * 359.74954 * 4 3 2 13 13 C 1.50702 * 126.32104 * 180.24648 * 12 4 3 14 14 C 1.37746 * 107.35887 * 0.39657 * 12 4 3 15 15 C 1.47666 * 126.34718 * 179.86919 * 14 12 4 16 16 N 1.29662 * 119.99919 * 179.70700 * 15 14 12 17 17 N 1.40099 * 120.00114 * 180.02562 * 16 15 14 18 18 C 1.46502 * 120.00079 * 180.02562 * 17 16 15 19 19 H 1.08996 * 109.47423 * 29.99663 * 18 17 16 20 20 C 1.52997 * 109.46612 * 269.99405 * 18 17 16 21 21 C 1.50704 * 109.47074 * 149.99839 * 18 17 16 22 22 H 1.07999 * 119.99817 * 359.97438 * 21 18 17 23 23 C 1.37879 * 119.99573 * 179.97438 * 21 18 17 24 24 N 1.31515 * 120.00309 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 119.99681 * 180.02562 * 23 21 18 26 26 H 1.48499 * 109.47342 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.47157 * 300.00347 * 25 23 21 28 28 H 1.48502 * 109.47104 * 59.99914 * 25 23 21 29 29 H 1.08997 * 109.46978 * 270.04109 * 1 2 3 30 30 H 1.09000 * 109.47180 * 30.04649 * 1 2 3 31 31 H 1.09000 * 109.47005 * 150.03945 * 1 2 3 32 32 H 1.08001 * 120.02867 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.96943 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.93016 * 180.02562 * 8 7 6 35 35 H 1.07996 * 119.97066 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47127 * 274.43216 * 11 10 9 37 37 H 1.08998 * 109.47639 * 34.43080 * 11 10 9 38 38 H 1.08998 * 109.47354 * 154.43737 * 11 10 9 39 39 H 1.09000 * 109.46810 * 275.65009 * 13 12 4 40 40 H 1.08992 * 109.47424 * 35.65241 * 13 12 4 41 41 H 1.09001 * 109.46889 * 155.66213 * 13 12 4 42 42 H 1.07997 * 120.00065 * 359.72001 * 15 14 12 43 43 H 0.96998 * 120.00026 * 0.02562 * 17 16 15 44 44 H 1.08994 * 109.47631 * 299.99756 * 20 18 17 45 45 H 1.09002 * 109.47346 * 60.00534 * 20 18 17 46 46 H 1.09007 * 109.47090 * 179.97438 * 20 18 17 47 47 H 0.96997 * 119.99872 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0580 0.0000 4 7 3.6111 0.6474 0.0006 5 6 4.7289 1.4924 0.0013 6 6 5.7411 1.3068 0.9338 7 6 6.8416 2.1409 0.9316 8 6 6.9367 3.1601 0.0015 9 6 5.9307 3.3476 -0.9282 10 6 4.8300 2.5129 -0.9346 11 6 3.7371 2.7136 -1.9526 12 6 3.6405 -0.7038 0.0066 13 6 4.8738 -1.5698 0.0145 14 6 2.3350 -1.1433 0.0006 15 6 1.8850 -2.5498 0.0012 16 7 0.6180 -2.8250 0.0009 17 7 0.1910 -4.1594 0.0020 18 6 -1.2406 -4.4704 0.0011 19 1 -1.7842 -3.6785 -0.5141 20 6 -1.7402 -4.5772 1.4432 21 6 -1.4696 -5.7803 -0.7081 22 1 -0.6325 -6.3262 -1.1175 23 6 -2.7478 -6.2816 -0.8342 24 7 -3.7671 -5.6170 -0.3352 25 14 -3.0316 -7.9056 -1.7126 26 1 -4.4828 -8.2209 -1.7137 27 1 -2.5469 -7.8025 -3.1125 28 1 -2.2908 -8.9843 -1.0105 29 1 -0.3633 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 5.6680 0.5103 1.6595 33 1 7.6289 1.9972 1.6568 34 1 7.7986 3.8109 0.0014 35 1 6.0075 4.1445 -1.6530 36 1 3.0296 3.4566 -1.5844 37 1 4.1726 3.0599 -2.8899 38 1 3.2184 1.7697 -2.1198 39 1 5.2327 -1.7002 -1.0064 40 1 5.6490 -1.0927 0.6140 41 1 4.6316 -2.5431 0.4414 42 1 2.6113 -3.3491 0.0022 43 1 0.8433 -4.8773 0.0034 44 1 -1.1967 -5.3691 1.9584 45 1 -1.5746 -3.6297 1.9562 46 1 -2.8055 -4.8081 1.4426 47 1 -4.6663 -5.9696 -0.4242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884441304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:23 Heat of formation + Delta-G solvation = 138.786452 kcal Electronic energy + Delta-G solvation = -26624.031099 eV Core-core repulsion = 23002.226362 eV Total energy + Delta-G solvation = -3621.804737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52379 -39.36170 -36.36588 -34.45274 -33.74239 -33.26277 -32.10863 -31.09997 -30.16189 -28.09949 -27.84112 -26.50004 -26.26302 -25.17481 -23.27343 -21.90692 -21.53775 -20.23537 -19.49235 -19.12713 -17.58159 -16.57300 -16.16472 -16.08042 -15.59257 -14.99449 -14.80417 -14.61651 -14.09141 -13.89494 -13.64717 -13.55222 -13.21106 -13.15187 -12.82364 -12.56992 -12.46311 -12.42167 -12.36988 -12.17244 -12.13036 -11.75335 -11.56403 -11.47051 -11.32214 -11.02319 -10.86914 -10.57267 -10.55551 -10.20644 -10.19310 -9.65332 -9.26840 -9.11839 -8.98981 -8.72975 -8.51678 -8.29577 -6.60055 -6.10895 -4.19034 0.71679 0.97330 1.80367 2.40808 2.47081 3.26785 3.31620 3.32693 3.33714 3.71308 3.90684 4.38501 4.45814 4.48878 4.59196 4.66454 4.86184 4.92885 4.95545 5.15383 5.21081 5.27318 5.33681 5.40197 5.41640 5.52200 5.54508 5.60768 5.77676 5.92958 5.94963 5.96484 6.08628 6.09692 6.15746 6.23113 6.37372 6.43189 6.51680 6.73336 6.89139 7.04326 7.09493 7.20117 7.25274 7.61027 7.80608 7.86594 7.91576 8.20403 8.36956 8.89516 9.44506 9.48087 10.94638 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.002214 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.138002 B =12644.488453 C =12932.031905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.111 3.889 3 N -0.296 5.296 4 N -0.329 5.329 5 C 0.157 3.843 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.109 4.109 10 C -0.071 4.071 11 C -0.110 4.110 12 C 0.086 3.914 13 C -0.092 4.092 14 C -0.148 4.148 15 C 0.032 3.968 16 N -0.202 5.202 17 N -0.631 5.631 18 C 0.300 3.700 19 H 0.041 0.959 20 C -0.150 4.150 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.066 3.934 24 N -0.886 5.886 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.366 0.634 44 H 0.024 0.976 45 H 0.012 0.988 46 H 0.089 0.911 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.985 15.692 0.738 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 N -0.115 5.115 4 N -0.105 5.105 5 C 0.065 3.935 6 C -0.140 4.140 7 C -0.130 4.130 8 C -0.135 4.135 9 C -0.127 4.127 10 C -0.073 4.073 11 C -0.167 4.167 12 C -0.042 4.042 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.178 4.178 16 N -0.014 5.014 17 N -0.367 5.367 18 C 0.198 3.802 19 H 0.059 0.941 20 C -0.209 4.209 21 C -0.569 4.569 22 H 0.077 0.923 23 C -0.137 4.137 24 N -0.524 5.524 25 Si 0.729 3.271 26 H -0.211 1.211 27 H -0.202 1.202 28 H -0.202 1.202 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.202 0.798 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.107 0.893 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.690 17.307 0.745 26.226 hybrid contribution 0.866 -2.550 -0.313 2.711 sum 20.556 14.757 0.433 25.308 Atomic orbital electron populations 1.20360 0.85577 1.04026 1.03376 1.22677 0.97272 0.89395 0.96413 1.77297 0.84982 1.22498 1.26756 1.45230 1.04053 1.02994 1.58242 1.17218 0.86081 0.93411 0.96742 1.21147 0.94338 1.00944 0.97557 1.20981 0.97560 0.95195 0.99251 1.21218 0.98892 0.98036 0.95375 1.20967 0.93201 0.99026 0.99543 1.19945 0.96743 0.94985 0.95612 1.20754 0.96296 1.03548 0.96113 1.21281 0.96500 0.83614 1.02794 1.20528 0.92578 0.98627 1.03310 1.18352 0.90079 0.92429 1.15142 1.22547 0.91943 0.92479 1.10857 1.73838 1.16686 1.05388 1.05468 1.48977 1.08537 0.97560 1.81640 1.18463 0.73460 0.95536 0.92769 0.94135 1.22206 1.03979 0.96876 0.97888 1.21210 0.93147 1.05742 1.36767 0.92346 1.24855 0.95748 0.97608 0.95457 1.69878 0.99182 1.38569 1.44742 0.86506 0.77123 0.83366 0.80079 1.21121 1.20221 1.20227 0.90558 0.91757 0.87934 0.85177 0.85193 0.85505 0.85256 0.90421 0.91664 0.91132 0.90290 0.90977 0.89319 0.88452 0.79827 0.95664 0.96855 0.89279 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 9.86 36.01 0.36 -0.82 16 2 C 0.11 1.84 7.26 -82.00 -0.59 1.25 16 3 N -0.30 -4.78 10.89 33.90 0.37 -4.41 16 4 N -0.33 -4.66 2.98 -6.46 -0.02 -4.68 16 5 C 0.16 1.88 6.01 -83.61 -0.50 1.37 16 6 C -0.12 -1.15 8.48 -39.40 -0.33 -1.49 16 7 C -0.11 -0.83 10.04 -39.61 -0.40 -1.23 16 8 C -0.12 -0.83 10.04 -39.55 -0.40 -1.23 16 9 C -0.11 -0.90 9.71 -39.61 -0.38 -1.28 16 10 C -0.07 -0.77 5.90 -104.44 -0.62 -1.38 16 11 C -0.11 -1.19 9.20 36.01 0.33 -0.85 16 12 C 0.09 1.18 6.87 -81.31 -0.56 0.62 16 13 C -0.09 -0.90 9.87 36.01 0.36 -0.54 16 14 C -0.15 -2.39 6.12 -105.12 -0.64 -3.03 16 15 C 0.03 0.55 10.67 -14.62 -0.16 0.39 16 16 N -0.20 -4.07 9.03 32.19 0.29 -3.78 16 17 N -0.63 -13.85 6.10 -5.88 -0.04 -13.88 16 18 C 0.30 7.58 3.23 -69.08 -0.22 7.36 16 19 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 20 C -0.15 -3.69 9.29 37.16 0.35 -3.34 16 21 C -0.53 -14.16 8.74 -34.44 -0.30 -14.46 16 22 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 23 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 24 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 25 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 26 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.82 6.33 -51.93 -0.33 1.49 16 32 H 0.13 1.14 6.91 -52.49 -0.36 0.78 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 38 H 0.07 0.92 6.70 -51.93 -0.35 0.58 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.58 5.62 -51.93 -0.29 0.29 16 41 H 0.09 0.79 7.37 -51.93 -0.38 0.41 16 42 H 0.10 1.48 7.43 -52.49 -0.39 1.09 16 43 H 0.37 7.48 8.58 -182.60 -1.57 5.91 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 2.35 6.07 -51.92 -0.32 2.04 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -30.26 388.14 -9.93 -40.20 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.18 Total: 5.94 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -3.82 Total: -16.98 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 1.23 Total: -50.74 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.26 -9.93 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.984 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds