Wall clock time and date at job start Tue Mar 31 2020 14:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30619 * 125.90864 * 2 1 4 4 N 1.39960 * 108.84889 * 179.97438 * 3 2 1 5 5 C 1.40134 * 125.85104 * 180.02562 * 4 3 2 6 6 C 1.38871 * 120.07585 * 129.14489 * 5 4 3 7 7 C 1.38087 * 119.93927 * 179.97438 * 6 5 4 8 8 C 1.38306 * 120.06299 * 359.97438 * 7 6 5 9 9 C 1.38257 * 120.14115 * 0.02562 * 8 7 6 10 10 C 1.38142 * 120.06216 * 359.70015 * 9 8 7 11 11 C 1.50700 * 120.03117 * 180.30050 * 10 9 8 12 12 C 1.35153 * 108.30536 * 359.74954 * 4 3 2 13 13 C 1.50702 * 126.32104 * 180.24648 * 12 4 3 14 14 C 1.37746 * 107.35887 * 0.39657 * 12 4 3 15 15 C 1.47666 * 126.34718 * 179.86919 * 14 12 4 16 16 N 1.29662 * 119.99919 * 179.70700 * 15 14 12 17 17 N 1.40099 * 120.00114 * 180.02562 * 16 15 14 18 18 C 1.46502 * 120.00079 * 180.02562 * 17 16 15 19 19 H 1.08996 * 109.47423 * 29.99663 * 18 17 16 20 20 C 1.52997 * 109.46612 * 269.99405 * 18 17 16 21 21 C 1.50704 * 109.47074 * 149.99839 * 18 17 16 22 22 H 1.07999 * 119.99817 * 359.97438 * 21 18 17 23 23 C 1.37879 * 119.99573 * 179.97438 * 21 18 17 24 24 N 1.31515 * 120.00309 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 119.99681 * 180.02562 * 23 21 18 26 26 H 1.48499 * 109.47342 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.47157 * 300.00347 * 25 23 21 28 28 H 1.48502 * 109.47104 * 59.99914 * 25 23 21 29 29 H 1.08997 * 109.46978 * 270.04109 * 1 2 3 30 30 H 1.09000 * 109.47180 * 30.04649 * 1 2 3 31 31 H 1.09000 * 109.47005 * 150.03945 * 1 2 3 32 32 H 1.08001 * 120.02867 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.96943 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.93016 * 180.02562 * 8 7 6 35 35 H 1.07996 * 119.97066 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.47127 * 274.43216 * 11 10 9 37 37 H 1.08998 * 109.47639 * 34.43080 * 11 10 9 38 38 H 1.08998 * 109.47354 * 154.43737 * 11 10 9 39 39 H 1.09000 * 109.46810 * 275.65009 * 13 12 4 40 40 H 1.08992 * 109.47424 * 35.65241 * 13 12 4 41 41 H 1.09001 * 109.46889 * 155.66213 * 13 12 4 42 42 H 1.07997 * 120.00065 * 359.72001 * 15 14 12 43 43 H 0.96998 * 120.00026 * 0.02562 * 17 16 15 44 44 H 1.08994 * 109.47631 * 299.99756 * 20 18 17 45 45 H 1.09002 * 109.47346 * 60.00534 * 20 18 17 46 46 H 1.09007 * 109.47090 * 179.97438 * 20 18 17 47 47 H 0.96997 * 119.99872 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0580 0.0000 4 7 3.6111 0.6474 0.0006 5 6 4.7289 1.4924 0.0013 6 6 5.7411 1.3068 0.9338 7 6 6.8416 2.1409 0.9316 8 6 6.9367 3.1601 0.0015 9 6 5.9307 3.3476 -0.9282 10 6 4.8300 2.5129 -0.9346 11 6 3.7371 2.7136 -1.9526 12 6 3.6405 -0.7038 0.0066 13 6 4.8738 -1.5698 0.0145 14 6 2.3350 -1.1433 0.0006 15 6 1.8850 -2.5498 0.0012 16 7 0.6180 -2.8250 0.0009 17 7 0.1910 -4.1594 0.0020 18 6 -1.2406 -4.4704 0.0011 19 1 -1.7842 -3.6785 -0.5141 20 6 -1.7402 -4.5772 1.4432 21 6 -1.4696 -5.7803 -0.7081 22 1 -0.6325 -6.3262 -1.1175 23 6 -2.7478 -6.2816 -0.8342 24 7 -3.7671 -5.6170 -0.3352 25 14 -3.0316 -7.9056 -1.7126 26 1 -4.4828 -8.2209 -1.7137 27 1 -2.5469 -7.8025 -3.1125 28 1 -2.2908 -8.9843 -1.0105 29 1 -0.3633 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5132 32 1 5.6680 0.5103 1.6595 33 1 7.6289 1.9972 1.6568 34 1 7.7986 3.8109 0.0014 35 1 6.0075 4.1445 -1.6530 36 1 3.0296 3.4566 -1.5844 37 1 4.1726 3.0599 -2.8899 38 1 3.2184 1.7697 -2.1198 39 1 5.2327 -1.7002 -1.0064 40 1 5.6490 -1.0927 0.6140 41 1 4.6316 -2.5431 0.4414 42 1 2.6113 -3.3491 0.0022 43 1 0.8433 -4.8773 0.0034 44 1 -1.1967 -5.3691 1.9584 45 1 -1.5746 -3.6297 1.9562 46 1 -2.8055 -4.8081 1.4426 47 1 -4.6663 -5.9696 -0.4242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884441304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:22 Heat of formation + Delta-G solvation = 123.411948 kcal Electronic energy + Delta-G solvation = -26624.697787 eV Core-core repulsion = 23002.226362 eV Total energy + Delta-G solvation = -3622.471425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60663 -40.12986 -37.97328 -35.99029 -35.03123 -34.11850 -33.43223 -32.47041 -31.28245 -29.48913 -28.83214 -27.63269 -27.38339 -27.18350 -24.27943 -22.93361 -22.51620 -22.06020 -20.52170 -20.39082 -18.87729 -18.11706 -17.13258 -17.05861 -16.92368 -16.69787 -15.87267 -15.66744 -15.25437 -14.90327 -14.73081 -14.53202 -14.42200 -14.29649 -14.14021 -14.01944 -13.78404 -13.44420 -13.36432 -13.31792 -13.25958 -13.01085 -12.86031 -12.77476 -12.72001 -12.45677 -12.29995 -12.18679 -12.07451 -12.05314 -11.70143 -11.08969 -10.65851 -10.59390 -10.50647 -9.92262 -9.80068 -9.38773 -8.21646 -8.07943 -6.30423 -0.07918 0.31733 0.73234 1.17738 1.40464 1.44451 1.46168 1.53950 2.26608 2.38949 2.52355 2.67840 3.14629 3.61415 3.62555 3.77987 3.85839 4.03247 4.09438 4.12993 4.33846 4.37254 4.45952 4.56994 4.64339 4.65434 4.67081 4.70521 4.78445 4.82737 4.89952 4.94352 5.00917 5.04767 5.08819 5.18422 5.18846 5.19988 5.32805 5.38128 5.45896 5.49702 5.57340 5.71233 5.82696 5.86417 5.93701 6.23678 6.28513 6.49612 6.67833 6.91915 7.41104 7.93474 8.90693 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.002214 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.138002 B =12644.488453 C =12932.031905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.095 3.905 3 N -0.316 5.316 4 N -0.321 5.321 5 C 0.115 3.885 6 C -0.123 4.123 7 C -0.106 4.106 8 C -0.106 4.106 9 C -0.110 4.110 10 C -0.089 4.089 11 C -0.106 4.106 12 C 0.111 3.889 13 C -0.094 4.094 14 C -0.193 4.193 15 C 0.071 3.929 16 N -0.246 5.246 17 N -0.646 5.646 18 C 0.311 3.689 19 H 0.000 1.000 20 C -0.135 4.135 21 C -0.545 4.545 22 H 0.060 0.940 23 C 0.017 3.983 24 N -0.914 5.914 25 Si 0.969 3.031 26 H -0.282 1.282 27 H -0.274 1.274 28 H -0.268 1.268 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.371 0.629 44 H 0.028 0.972 45 H 0.017 0.983 46 H 0.067 0.933 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.137 16.408 0.765 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 N -0.136 5.136 4 N -0.097 5.097 5 C 0.025 3.975 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.091 4.091 11 C -0.162 4.162 12 C -0.019 4.019 13 C -0.151 4.151 14 C -0.206 4.206 15 C -0.140 4.140 16 N -0.055 5.055 17 N -0.384 5.384 18 C 0.207 3.793 19 H 0.018 0.982 20 C -0.195 4.195 21 C -0.585 4.585 22 H 0.079 0.921 23 C -0.183 4.183 24 N -0.553 5.553 25 Si 0.794 3.206 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.193 1.193 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.170 0.830 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.208 0.792 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.086 0.914 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 23.867 18.054 0.777 29.936 hybrid contribution -0.072 -2.454 -0.318 2.476 sum 23.795 15.599 0.458 28.456 Atomic orbital electron populations 1.20226 0.85926 1.03415 1.03089 1.22757 0.97482 0.90038 0.97010 1.77232 0.86262 1.22654 1.27496 1.45475 1.04013 1.03585 1.56600 1.17655 0.86209 0.94659 0.98940 1.21319 0.94290 1.01672 0.97075 1.21391 0.97259 0.94212 0.99525 1.21674 0.99155 0.97675 0.93882 1.21275 0.92406 0.98838 1.00269 1.20095 0.97674 0.95600 0.95726 1.20677 0.96375 1.01734 0.97453 1.21895 0.97014 0.83930 0.99025 1.20745 0.91181 0.98447 1.04766 1.18454 0.91322 0.91800 1.19053 1.22999 0.91656 0.93679 1.05678 1.73924 1.18246 1.04167 1.09206 1.48453 1.07120 0.98543 1.84237 1.18027 0.75253 0.93744 0.92245 0.98164 1.22018 1.02468 0.97070 0.97925 1.21509 0.93514 1.06357 1.37075 0.92147 1.25706 0.95469 1.00999 0.96111 1.70014 0.99505 1.40088 1.45649 0.85455 0.77072 0.79260 0.78859 1.20761 1.19892 1.19272 0.90696 0.90588 0.90188 0.84567 0.82088 0.82130 0.83040 0.91206 0.89562 0.94120 0.88837 0.88787 0.88139 0.86046 0.79240 0.95283 0.96421 0.91422 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 9.86 71.24 0.70 -1.59 16 2 C 0.09 3.27 7.26 43.46 0.32 3.59 16 3 N -0.32 -10.48 10.89 -46.67 -0.51 -10.99 16 4 N -0.32 -8.96 2.98 -174.35 -0.52 -9.48 16 5 C 0.12 2.58 6.01 38.11 0.23 2.81 16 6 C -0.12 -2.01 8.48 22.39 0.19 -1.82 16 7 C -0.11 -1.11 10.04 22.25 0.22 -0.89 16 8 C -0.11 -1.01 10.04 22.29 0.22 -0.79 16 9 C -0.11 -1.45 9.71 22.25 0.22 -1.23 16 10 C -0.09 -1.79 5.90 -19.75 -0.12 -1.90 16 11 C -0.11 -2.24 9.20 71.24 0.66 -1.59 16 12 C 0.11 2.94 6.87 41.93 0.29 3.23 16 13 C -0.09 -1.56 9.87 71.24 0.70 -0.86 16 14 C -0.19 -6.31 6.12 -20.18 -0.12 -6.44 16 15 C 0.07 2.46 10.67 87.51 0.93 3.39 16 16 N -0.25 -10.33 9.03 -52.07 -0.47 -10.80 16 17 N -0.65 -29.42 6.10 -172.52 -1.05 -30.47 16 18 C 0.31 16.49 3.23 44.25 0.14 16.63 16 19 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 20 C -0.14 -6.92 9.29 71.98 0.67 -6.26 16 21 C -0.55 -29.94 8.74 25.60 0.22 -29.72 16 22 H 0.06 3.21 7.79 -2.91 -0.02 3.18 16 23 C 0.02 0.95 5.30 84.66 0.45 1.39 16 24 N -0.91 -52.32 11.32 21.45 0.24 -52.08 16 25 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 3.09 6.33 -2.39 -0.02 3.07 16 32 H 0.14 1.97 6.91 -2.91 -0.02 1.95 16 33 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.09 1.37 8.11 -2.39 -0.02 1.35 16 38 H 0.04 1.09 6.70 -2.39 -0.02 1.08 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.19 5.62 -2.39 -0.01 1.17 16 41 H 0.10 1.48 7.37 -2.39 -0.02 1.47 16 42 H 0.12 3.52 7.43 -2.91 -0.02 3.49 16 43 H 0.37 15.48 8.58 -213.32 -1.83 13.65 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 3.73 6.07 -2.38 -0.01 3.72 16 47 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -69.17 388.14 4.80 -64.37 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.85 Total: 26.50 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 5.92 Total: -22.04 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -2.31 Total: -113.81 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.17 4.80 -64.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.786 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds