Wall clock time and date at job start Tue Mar 31 2020 14:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99830 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00094 * 179.97438 * 12 11 10 15 15 C 1.45203 * 116.99897 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47265 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47304 * 304.99954 * 16 15 14 18 18 C 1.53089 * 109.47629 * 184.98955 * 16 15 14 19 19 C 1.53203 * 109.14926 * 182.36428 * 18 16 15 20 20 C 1.53077 * 109.02280 * 56.87280 * 19 18 16 21 21 C 1.53052 * 109.53846 * 183.00226 * 20 19 18 22 22 C 1.53111 * 109.16682 * 296.86212 * 21 20 19 23 23 O 1.42901 * 109.41543 * 302.54633 * 22 21 20 24 24 C 1.42900 * 114.12094 * 61.18356 * 23 22 21 25 25 C 1.53075 * 109.50866 * 63.22488 * 20 19 18 26 26 C 1.52970 * 109.35453 * 303.14647 * 20 19 18 27 27 O 1.42899 * 109.47476 * 65.01088 * 16 15 14 28 28 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 30 30 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 31 31 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 32 32 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 33 33 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 34 34 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 35 35 H 1.09000 * 109.47076 * 300.00549 * 15 14 12 36 36 H 1.09003 * 109.47054 * 59.99988 * 15 14 12 37 37 H 1.09000 * 109.52658 * 302.26481 * 18 16 15 38 38 H 1.08999 * 109.52596 * 62.46568 * 18 16 15 39 39 H 1.08997 * 109.54832 * 176.73333 * 19 18 16 40 40 H 1.09005 * 109.54999 * 296.91866 * 19 18 16 41 41 H 1.09007 * 109.52226 * 56.76616 * 21 20 19 42 42 H 1.08998 * 109.52195 * 176.95291 * 21 20 19 43 43 H 1.09003 * 109.47787 * 182.56958 * 22 21 20 44 44 H 1.08997 * 109.48461 * 62.53161 * 22 21 20 45 45 H 1.09003 * 109.48185 * 178.81605 * 24 23 22 46 46 H 1.08995 * 109.49553 * 58.78213 * 24 23 22 47 47 H 1.09000 * 109.52152 * 183.03544 * 25 20 19 48 48 H 1.08997 * 109.52579 * 303.16757 * 25 20 19 49 49 H 1.08998 * 109.48438 * 177.44043 * 26 20 19 50 50 H 1.09000 * 109.48206 * 297.46391 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4594 -6.1326 0.0048 13 8 3.6474 -5.9118 -0.0005 14 8 2.0120 -7.3981 0.0090 15 6 3.0120 -8.4509 0.0062 16 6 2.3174 -9.8141 0.0110 17 1 1.6309 -9.8691 0.8558 18 6 3.3673 -10.9215 0.1336 19 6 2.6694 -12.2841 0.0783 20 6 1.8677 -12.3816 -1.2221 21 6 1.1053 -13.7084 -1.2552 22 6 2.1088 -14.8648 -1.2602 23 8 2.9840 -14.7295 -2.3817 24 6 3.7590 -13.5289 -2.3762 25 6 2.8222 -12.3185 -2.4171 26 6 0.8771 -11.2183 -1.2954 27 8 1.5889 -9.9819 -1.2068 28 1 -0.4850 0.8401 0.0004 29 1 0.6281 -2.5552 0.8979 30 1 0.6206 -2.5586 -0.8820 31 1 2.8678 -3.6059 -0.8902 32 1 2.8760 -3.6028 0.8897 33 1 0.8573 -5.0435 0.9006 34 1 0.8498 -5.0461 -0.8793 35 1 3.6308 -8.3619 -0.8867 36 1 3.6389 -8.3589 0.8932 37 1 4.0779 -10.8425 -0.6891 38 1 3.8943 -10.8204 1.0824 39 1 3.4160 -13.0777 0.1067 40 1 1.9976 -12.3848 0.9308 41 1 0.4670 -13.7838 -0.3748 42 1 0.4925 -13.7540 -2.1555 43 1 1.5725 -15.8111 -1.3297 44 1 2.6920 -14.8440 -0.3395 45 1 4.4114 -13.5134 -3.2493 46 1 4.3635 -13.4903 -1.4700 47 1 2.2478 -12.3336 -3.3433 48 1 3.4085 -11.4010 -2.3670 49 1 0.3369 -11.2598 -2.2412 50 1 0.1697 -11.2906 -0.4694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:02 Heat of formation + Delta-G solvation = -210.460672 kcal Electronic energy + Delta-G solvation = -28010.320168 eV Core-core repulsion = 24001.476518 eV Total energy + Delta-G solvation = -4008.843650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23464 -40.18947 -38.62033 -36.45573 -34.95119 -34.28161 -33.28115 -32.09554 -31.60994 -29.53836 -28.13272 -27.23972 -24.71548 -24.19163 -23.71279 -23.21282 -21.60171 -21.06441 -19.78330 -18.97024 -17.39496 -17.31708 -16.81002 -16.57507 -16.42744 -16.13170 -15.90321 -15.46794 -15.41376 -15.01228 -14.86114 -14.49002 -14.30645 -14.13850 -13.39844 -13.04063 -12.92700 -12.79681 -12.74717 -12.53015 -12.37825 -12.14083 -11.89805 -11.78395 -11.60183 -11.42933 -11.31185 -11.12397 -10.84209 -10.70374 -10.64907 -10.61113 -10.57234 -10.54716 -10.20383 -10.13834 -9.72171 -9.53966 -9.37806 -9.06468 -8.33677 -5.98900 -4.00598 2.52741 2.79195 3.33179 3.33528 3.40533 3.43762 3.45974 4.02721 4.09234 4.18208 4.38219 4.47350 4.49044 4.55247 4.60714 4.72274 4.74451 4.84728 4.97880 5.00354 5.08241 5.11528 5.14586 5.20384 5.25601 5.27131 5.30102 5.37261 5.37886 5.41457 5.47211 5.52262 5.58385 5.65223 5.66507 5.71879 5.81515 5.90863 6.13276 6.60185 6.64192 6.74527 6.84163 6.87287 7.09314 7.68462 7.80104 8.01113 8.05531 8.44069 9.06434 9.63435 11.12569 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.039336 B = 0.001721 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.641717 B =16266.655548 C =16460.003391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.099 4.099 11 C -0.111 4.111 12 C 0.461 3.539 13 O -0.511 6.511 14 O -0.355 6.355 15 C 0.073 3.927 16 C 0.093 3.907 17 H 0.070 0.930 18 C -0.150 4.150 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.144 4.144 22 C 0.060 3.940 23 O -0.383 6.383 24 C 0.058 3.942 25 C -0.142 4.142 26 C 0.073 3.927 27 O -0.364 6.364 28 H 0.260 0.740 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -33.272 -0.663 33.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.398 6.398 14 O -0.272 6.272 15 C -0.001 4.001 16 C 0.035 3.965 17 H 0.088 0.912 18 C -0.188 4.188 19 C -0.152 4.152 20 C -0.096 4.096 21 C -0.182 4.182 22 C -0.016 4.016 23 O -0.302 6.302 24 C -0.018 4.018 25 C -0.179 4.179 26 C -0.004 4.004 27 O -0.283 6.283 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.114 0.886 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.286 -33.113 -0.956 33.289 hybrid contribution 0.486 0.891 0.448 1.109 sum 3.772 -32.222 -0.507 32.446 Atomic orbital electron populations 1.69975 1.06027 1.26486 1.51071 1.25028 0.94873 0.99293 0.95350 0.86521 0.80180 0.83701 0.77533 1.19707 1.21024 1.21033 1.21281 0.93219 0.90909 1.50295 0.92482 1.19137 0.93917 0.91189 0.97459 1.21575 0.98938 0.91263 1.01941 1.21687 0.97332 0.90597 1.05277 1.24430 0.90135 0.83386 0.71590 1.90637 1.18550 1.85168 1.45464 1.86582 1.40332 1.15898 1.84388 1.22958 0.90076 0.83889 1.03220 1.22090 0.93431 0.92447 0.88521 0.91200 1.22181 0.98597 0.94403 1.03570 1.21737 0.99516 0.97056 0.96866 1.21187 0.96714 0.95811 0.95878 1.22161 0.98558 0.94177 1.03302 1.22577 0.91429 0.98362 0.89267 1.87939 1.56156 1.40541 1.45564 1.22648 0.92982 0.84156 1.02033 1.22187 0.98506 0.99257 0.97981 1.22601 0.92598 0.82666 1.02508 1.88047 1.65389 1.37038 1.37813 0.93075 0.96358 0.96302 0.92439 0.92478 0.88140 0.88041 0.90566 0.89894 0.90303 0.90242 0.90919 0.91288 0.90627 0.90600 0.88899 0.93047 0.88860 0.93051 0.90839 0.89913 0.88602 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 11 C -0.11 -1.91 5.81 -27.89 -0.16 -2.07 16 12 C 0.46 7.81 7.96 36.00 0.29 8.10 16 13 O -0.51 -9.94 15.73 -18.75 -0.29 -10.23 16 14 O -0.35 -5.25 10.19 -42.02 -0.43 -5.68 16 15 C 0.07 0.85 5.13 37.16 0.19 1.04 16 16 C 0.09 0.86 2.93 -26.69 -0.08 0.78 16 17 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.15 -1.00 5.07 -26.58 -0.13 -1.13 16 19 C -0.11 -0.65 4.24 -26.59 -0.11 -0.76 16 20 C -0.10 -0.59 0.52 -154.42 -0.08 -0.67 16 21 C -0.14 -0.76 4.92 -26.65 -0.13 -0.89 16 22 C 0.06 0.34 6.57 37.21 0.24 0.58 16 23 O -0.38 -3.08 10.76 -35.23 -0.38 -3.46 16 24 C 0.06 0.38 6.57 37.22 0.24 0.63 16 25 C -0.14 -0.97 4.55 -26.63 -0.12 -1.09 16 26 C 0.07 0.56 5.55 37.14 0.21 0.77 16 27 O -0.36 -3.88 9.88 -38.78 -0.38 -4.27 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 37 H 0.08 0.54 6.57 -51.93 -0.34 0.20 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.37 5.04 -51.93 -0.26 0.11 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.25 6.69 -51.93 -0.35 -0.09 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.30 6.54 -51.93 -0.34 -0.04 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.62 6.11 -51.93 -0.32 0.31 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -33.28 387.95 -8.99 -42.28 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.75 Total: -4.85 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.32 Total: -10.31 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -1.49 Total: -23.64 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.28 -8.99 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.184 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds