Wall clock time and date at job start Tue Mar 31 2020 14:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99830 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00094 * 179.97438 * 12 11 10 15 15 C 1.45203 * 116.99897 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47265 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47304 * 304.99954 * 16 15 14 18 18 C 1.53089 * 109.47629 * 184.98955 * 16 15 14 19 19 C 1.53203 * 109.14926 * 182.36428 * 18 16 15 20 20 C 1.53077 * 109.02280 * 56.87280 * 19 18 16 21 21 C 1.53052 * 109.53846 * 183.00226 * 20 19 18 22 22 C 1.53111 * 109.16682 * 296.86212 * 21 20 19 23 23 O 1.42901 * 109.41543 * 302.54633 * 22 21 20 24 24 C 1.42900 * 114.12094 * 61.18356 * 23 22 21 25 25 C 1.53075 * 109.50866 * 63.22488 * 20 19 18 26 26 C 1.52970 * 109.35453 * 303.14647 * 20 19 18 27 27 O 1.42899 * 109.47476 * 65.01088 * 16 15 14 28 28 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 30 30 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 31 31 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 32 32 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 33 33 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 34 34 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 35 35 H 1.09000 * 109.47076 * 300.00549 * 15 14 12 36 36 H 1.09003 * 109.47054 * 59.99988 * 15 14 12 37 37 H 1.09000 * 109.52658 * 302.26481 * 18 16 15 38 38 H 1.08999 * 109.52596 * 62.46568 * 18 16 15 39 39 H 1.08997 * 109.54832 * 176.73333 * 19 18 16 40 40 H 1.09005 * 109.54999 * 296.91866 * 19 18 16 41 41 H 1.09007 * 109.52226 * 56.76616 * 21 20 19 42 42 H 1.08998 * 109.52195 * 176.95291 * 21 20 19 43 43 H 1.09003 * 109.47787 * 182.56958 * 22 21 20 44 44 H 1.08997 * 109.48461 * 62.53161 * 22 21 20 45 45 H 1.09003 * 109.48185 * 178.81605 * 24 23 22 46 46 H 1.08995 * 109.49553 * 58.78213 * 24 23 22 47 47 H 1.09000 * 109.52152 * 183.03544 * 25 20 19 48 48 H 1.08997 * 109.52579 * 303.16757 * 25 20 19 49 49 H 1.08998 * 109.48438 * 177.44043 * 26 20 19 50 50 H 1.09000 * 109.48206 * 297.46391 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4594 -6.1326 0.0048 13 8 3.6474 -5.9118 -0.0005 14 8 2.0120 -7.3981 0.0090 15 6 3.0120 -8.4509 0.0062 16 6 2.3174 -9.8141 0.0110 17 1 1.6309 -9.8691 0.8558 18 6 3.3673 -10.9215 0.1336 19 6 2.6694 -12.2841 0.0783 20 6 1.8677 -12.3816 -1.2221 21 6 1.1053 -13.7084 -1.2552 22 6 2.1088 -14.8648 -1.2602 23 8 2.9840 -14.7295 -2.3817 24 6 3.7590 -13.5289 -2.3762 25 6 2.8222 -12.3185 -2.4171 26 6 0.8771 -11.2183 -1.2954 27 8 1.5889 -9.9819 -1.2068 28 1 -0.4850 0.8401 0.0004 29 1 0.6281 -2.5552 0.8979 30 1 0.6206 -2.5586 -0.8820 31 1 2.8678 -3.6059 -0.8902 32 1 2.8760 -3.6028 0.8897 33 1 0.8573 -5.0435 0.9006 34 1 0.8498 -5.0461 -0.8793 35 1 3.6308 -8.3619 -0.8867 36 1 3.6389 -8.3589 0.8932 37 1 4.0779 -10.8425 -0.6891 38 1 3.8943 -10.8204 1.0824 39 1 3.4160 -13.0777 0.1067 40 1 1.9976 -12.3848 0.9308 41 1 0.4670 -13.7838 -0.3748 42 1 0.4925 -13.7540 -2.1555 43 1 1.5725 -15.8111 -1.3297 44 1 2.6920 -14.8440 -0.3395 45 1 4.4114 -13.5134 -3.2493 46 1 4.3635 -13.4903 -1.4700 47 1 2.2478 -12.3336 -3.3433 48 1 3.4085 -11.4010 -2.3670 49 1 0.3369 -11.2598 -2.2412 50 1 0.1697 -11.2906 -0.4694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884573300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:01 Heat of formation + Delta-G solvation = -229.510713 kcal Electronic energy + Delta-G solvation = -28011.146240 eV Core-core repulsion = 24001.476518 eV Total energy + Delta-G solvation = -4009.669722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.86230 -41.40169 -39.27513 -37.69748 -36.16984 -35.55261 -34.16041 -33.87696 -32.08590 -30.52073 -29.60247 -27.98560 -26.17262 -24.96206 -24.47167 -23.90779 -22.68197 -22.23847 -21.34543 -19.53183 -18.71360 -18.41197 -18.14589 -17.58544 -17.30078 -17.15600 -16.78803 -16.48321 -16.22768 -15.91708 -15.70520 -15.48594 -15.38839 -15.21270 -14.43429 -14.18253 -13.93127 -13.87506 -13.80390 -13.37424 -13.34535 -13.15281 -13.07538 -12.88324 -12.67371 -12.54555 -12.42406 -12.26339 -12.19665 -12.02240 -11.75074 -11.66118 -11.60270 -11.56056 -11.38694 -11.20499 -11.09039 -11.06664 -10.77888 -10.54638 -10.09336 -8.20172 -6.30137 1.17834 1.40244 1.40665 1.54015 1.63055 2.42029 2.65800 2.98647 3.13170 3.47230 3.58576 3.65150 3.69503 3.85792 3.94035 3.98185 4.08596 4.14012 4.16069 4.18693 4.25821 4.32547 4.35281 4.42478 4.50655 4.61002 4.64052 4.64970 4.71337 4.73396 4.79069 4.85504 4.90005 4.91125 4.97869 5.04000 5.05170 5.07957 5.15119 5.17954 5.32291 5.36876 5.40692 5.53434 5.72769 5.86020 6.21236 6.26148 6.28722 6.74007 6.85610 7.38542 8.91597 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.039336 B = 0.001721 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.641717 B =16266.655548 C =16460.003391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.086 4.086 11 C -0.106 4.106 12 C 0.470 3.530 13 O -0.540 6.540 14 O -0.354 6.354 15 C 0.066 3.934 16 C 0.096 3.904 17 H 0.076 0.924 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.092 4.092 21 C -0.140 4.140 22 C 0.056 3.944 23 O -0.405 6.405 24 C 0.059 3.941 25 C -0.139 4.139 26 C 0.069 3.931 27 O -0.392 6.392 28 H 0.264 0.736 29 H 0.004 0.996 30 H 0.003 0.997 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -34.439 0.181 34.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.143 4.143 12 C 0.315 3.685 13 O -0.430 6.430 14 O -0.270 6.270 15 C -0.008 4.008 16 C 0.039 3.961 17 H 0.094 0.906 18 C -0.183 4.183 19 C -0.148 4.148 20 C -0.092 4.092 21 C -0.177 4.177 22 C -0.021 4.021 23 O -0.324 6.324 24 C -0.018 4.018 25 C -0.177 4.177 26 C -0.007 4.007 27 O -0.311 6.311 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.112 0.888 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.635 -34.311 -0.111 34.503 hybrid contribution 0.335 1.191 0.159 1.247 sum 3.971 -33.120 0.048 33.357 Atomic orbital electron populations 1.70079 1.07523 1.27734 1.51581 1.25923 0.95829 1.03135 0.94727 0.85423 0.78909 0.78943 0.77926 1.19106 1.20224 1.20122 1.21700 0.93439 0.92602 1.50669 0.92767 1.19028 0.94219 0.92192 0.95881 1.21271 0.97886 0.92130 1.01060 1.21504 0.97077 0.88722 1.06987 1.24170 0.89327 0.84120 0.70891 1.90629 1.19633 1.85717 1.47038 1.86554 1.41242 1.15517 1.83723 1.23299 0.89994 0.84062 1.03443 1.22132 0.94101 0.91622 0.88293 0.90595 1.22165 0.97883 0.93948 1.04264 1.21736 0.99776 0.96542 0.96714 1.21141 0.96381 0.95724 0.95953 1.22131 0.98474 0.93362 1.03763 1.22744 0.91385 0.98928 0.89010 1.87911 1.56732 1.41015 1.46779 1.22681 0.92855 0.83555 1.02673 1.22133 0.98556 0.99065 0.97916 1.22730 0.92933 0.82205 1.02834 1.88001 1.65985 1.38634 1.38518 0.92677 0.97724 0.97905 0.93467 0.93173 0.86197 0.86637 0.91402 0.88682 0.90669 0.88715 0.89908 0.90196 0.89073 0.91215 0.87895 0.91990 0.88696 0.92047 0.92004 0.90824 0.88768 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.05 3.10 7.74 -2.92 -0.02 3.08 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.69 4.44 30.59 0.14 -3.55 16 11 C -0.11 -3.54 5.81 29.85 0.17 -3.37 16 12 C 0.47 15.62 7.96 71.24 0.57 16.19 16 13 O -0.54 -20.91 15.73 21.96 0.35 -20.56 16 14 O -0.35 -10.13 10.19 -48.79 -0.50 -10.62 16 15 C 0.07 1.47 5.13 71.98 0.37 1.84 16 16 C 0.10 1.64 2.93 30.62 0.09 1.73 16 17 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 18 C -0.15 -1.65 5.07 30.69 0.16 -1.49 16 19 C -0.11 -0.98 4.24 30.69 0.13 -0.85 16 20 C -0.09 -1.00 0.52 -52.12 -0.03 -1.03 16 21 C -0.14 -1.21 4.92 30.65 0.15 -1.06 16 22 C 0.06 0.52 6.57 72.02 0.47 0.99 16 23 O -0.41 -6.02 10.76 -148.98 -1.60 -7.63 16 24 C 0.06 0.71 6.57 72.02 0.47 1.18 16 25 C -0.14 -1.82 4.55 30.66 0.14 -1.68 16 26 C 0.07 0.99 5.55 71.97 0.40 1.39 16 27 O -0.39 -8.06 9.88 -145.59 -1.44 -9.50 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 32 H 0.05 2.20 8.10 -2.38 -0.02 2.18 16 33 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 36 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 37 H 0.07 0.93 6.57 -2.39 -0.02 0.91 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 0.61 5.04 -2.39 -0.01 0.60 16 40 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.45 6.69 -2.39 -0.02 0.43 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 0.60 6.54 -2.39 -0.02 0.59 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 1.09 6.11 -2.39 -0.01 1.08 16 49 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.10 387.95 4.10 -67.00 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.90 Total: 9.58 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.07 Total: -19.28 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -3.19 Total: -48.31 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.10 4.10 -67.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.506 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds