Wall clock time and date at job start Tue Mar 31 2020 14:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48501 * 109.47051 * 240.00305 * 3 2 1 5 5 H 1.48508 * 109.46765 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47562 * 119.99655 * 3 2 1 7 7 C 1.37880 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47528 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46592 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00303 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99603 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00001 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47091 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.47354 * 54.99253 * 16 15 14 18 18 C 1.53092 * 109.47249 * 175.00025 * 16 15 14 19 19 C 1.53194 * 109.14447 * 177.65140 * 18 16 15 20 20 C 1.53074 * 109.03079 * 303.14273 * 19 18 16 21 21 C 1.53064 * 109.51153 * 296.72814 * 20 19 18 22 22 C 1.53112 * 109.16137 * 296.89454 * 21 20 19 23 23 O 1.42906 * 109.39922 * 302.52645 * 22 21 20 24 24 C 1.42900 * 114.13663 * 61.18777 * 23 22 21 25 25 C 1.53066 * 109.52110 * 176.96436 * 20 19 18 26 26 C 1.52974 * 109.37021 * 56.82339 * 20 19 18 27 27 O 1.42895 * 109.47678 * 294.98142 * 16 15 14 28 28 H 0.97002 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47208 * 59.99429 * 9 7 2 30 30 H 1.08998 * 109.47300 * 300.00381 * 9 7 2 31 31 H 1.09001 * 109.46610 * 59.99693 * 10 9 7 32 32 H 1.08994 * 109.46895 * 300.00598 * 10 9 7 33 33 H 1.08998 * 109.46820 * 60.00636 * 11 10 9 34 34 H 1.08994 * 109.47315 * 299.99919 * 11 10 9 35 35 H 1.09001 * 109.47157 * 299.99890 * 15 14 12 36 36 H 1.09004 * 109.47122 * 60.00023 * 15 14 12 37 37 H 1.09000 * 109.52311 * 297.54548 * 18 16 15 38 38 H 1.08992 * 109.52457 * 57.68204 * 18 16 15 39 39 H 1.09005 * 109.54637 * 63.00478 * 19 18 16 40 40 H 1.08994 * 109.54676 * 183.27688 * 19 18 16 41 41 H 1.09004 * 109.52528 * 56.79304 * 21 20 19 42 42 H 1.08998 * 109.52680 * 176.98867 * 21 20 19 43 43 H 1.08992 * 109.48891 * 182.54792 * 22 21 20 44 44 H 1.09006 * 109.49661 * 62.50730 * 22 21 20 45 45 H 1.09000 * 109.48228 * 178.83618 * 24 23 22 46 46 H 1.08995 * 109.49923 * 58.80119 * 24 23 22 47 47 H 1.08998 * 109.52252 * 183.00475 * 25 20 19 48 48 H 1.08993 * 109.52425 * 303.19865 * 25 20 19 49 49 H 1.09003 * 109.47814 * 62.55516 * 26 20 19 50 50 H 1.08991 * 109.48039 * 182.59101 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4598 -6.1325 0.0005 13 8 3.6477 -5.9116 0.0001 14 8 2.0124 -7.3980 0.0004 15 6 3.0125 -8.4507 0.0004 16 6 2.3179 -9.8140 0.0009 17 1 1.6274 -9.8703 -0.8406 18 6 3.3673 -10.9215 -0.1249 19 6 2.6696 -12.2840 -0.0646 20 6 1.8734 -12.3797 1.2393 21 6 2.8330 -12.3161 2.4301 22 6 3.7694 -13.5267 2.3861 23 8 2.9941 -14.7271 2.3953 24 6 2.1141 -14.8629 1.2776 25 6 1.1107 -13.7063 1.2766 26 6 0.8835 -11.2160 1.3159 27 8 1.5950 -9.9800 1.2223 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 2.8720 -3.6042 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8535 -5.0451 -0.8886 34 1 0.8540 -5.0446 0.8913 35 1 3.6353 -8.3602 -0.8896 36 1 3.6352 -8.3603 0.8904 37 1 3.8900 -10.8217 -1.0763 38 1 4.0822 -10.8406 0.6938 39 1 1.9930 -12.3851 -0.9132 40 1 3.4161 -13.0776 -0.0951 41 1 3.4202 -11.3993 2.3762 42 1 2.2625 -12.3304 3.3588 43 1 4.4252 -13.5109 3.2565 44 1 4.3703 -13.4890 1.4774 45 1 1.5780 -15.8092 1.3499 46 1 2.6930 -14.8427 0.3543 47 1 0.5022 -13.7513 2.1798 48 1 0.4684 -13.7820 0.3993 49 1 0.1722 -11.2891 0.4931 50 1 0.3479 -11.2562 2.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884573301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:05 Heat of formation + Delta-G solvation = -210.360807 kcal Electronic energy + Delta-G solvation = -28010.006476 eV Core-core repulsion = 24001.167156 eV Total energy + Delta-G solvation = -4008.839320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23468 -40.18943 -38.62014 -36.45533 -34.95117 -34.28003 -33.28145 -32.09389 -31.61039 -29.53785 -28.13100 -27.23899 -24.71410 -24.19051 -23.71197 -23.21209 -21.60221 -21.06223 -19.78233 -18.96930 -17.39441 -17.31639 -16.80971 -16.57324 -16.42679 -16.12987 -15.90006 -15.46667 -15.41365 -15.01252 -14.86118 -14.49150 -14.31172 -14.13821 -13.39936 -13.03958 -12.92654 -12.79607 -12.74690 -12.52730 -12.37065 -12.13297 -11.90364 -11.78479 -11.60181 -11.42601 -11.31095 -11.12389 -10.80189 -10.70625 -10.65667 -10.61178 -10.58240 -10.57157 -10.20499 -10.13984 -9.71468 -9.53907 -9.37155 -9.08840 -8.32752 -5.98291 -4.00210 2.52781 2.79241 3.33568 3.36255 3.39873 3.43401 3.43727 4.02743 4.09273 4.18216 4.38254 4.47381 4.49173 4.55261 4.60688 4.72277 4.74434 4.84750 4.97893 5.00368 5.08280 5.11547 5.14627 5.20384 5.25604 5.27183 5.30106 5.37619 5.37909 5.41507 5.47211 5.52292 5.58425 5.65299 5.66501 5.71934 5.81509 5.90846 6.13338 6.60230 6.64299 6.74564 6.84238 6.87322 7.09438 7.68228 7.80341 8.01350 8.05575 8.44309 9.06253 9.63664 11.13072 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.001721 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.566436 B =16267.254216 C =16460.476928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.111 4.111 12 C 0.461 3.539 13 O -0.511 6.511 14 O -0.355 6.355 15 C 0.073 3.927 16 C 0.093 3.907 17 H 0.070 0.930 18 C -0.150 4.150 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.142 4.142 22 C 0.058 3.942 23 O -0.383 6.383 24 C 0.060 3.940 25 C -0.144 4.144 26 C 0.073 3.927 27 O -0.364 6.364 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -33.247 0.719 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.149 4.149 12 C 0.305 3.695 13 O -0.398 6.398 14 O -0.272 6.272 15 C -0.001 4.001 16 C 0.035 3.965 17 H 0.088 0.912 18 C -0.187 4.187 19 C -0.152 4.152 20 C -0.096 4.096 21 C -0.179 4.179 22 C -0.018 4.018 23 O -0.302 6.302 24 C -0.016 4.016 25 C -0.182 4.182 26 C -0.004 4.004 27 O -0.283 6.283 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.253 -33.083 1.009 33.258 hybrid contribution 0.513 0.883 -0.446 1.114 sum 3.766 -32.200 0.563 32.425 Atomic orbital electron populations 1.69950 1.06022 1.26713 1.50871 1.25019 0.94873 0.99260 0.95325 0.86636 0.79552 0.83021 0.78659 1.20246 1.21308 1.20229 1.21202 0.93137 0.90933 1.50588 0.92599 1.19125 0.93901 0.91154 0.97447 1.21575 0.98944 0.91269 1.01934 1.21688 0.97328 0.90597 1.05277 1.24430 0.90137 0.83385 0.71588 1.90637 1.18552 1.85166 1.45468 1.86582 1.40330 1.15900 1.84389 1.22960 0.90082 0.83892 1.03210 1.22092 0.93508 0.92452 0.88439 0.91200 1.22177 0.98601 0.94405 1.03566 1.21735 0.99534 0.97058 0.96841 1.21190 0.96716 0.95814 0.95880 1.22186 0.98465 0.99256 0.98019 1.22652 0.92986 0.84157 1.02025 1.87938 1.55902 1.40566 1.45803 1.22578 0.91349 0.98358 0.89348 1.22164 0.98553 0.94180 1.03303 1.22601 0.92598 0.82670 1.02501 1.88045 1.65635 1.37037 1.37567 0.92959 0.96363 0.96323 0.92448 0.92474 0.88147 0.88032 0.89894 0.90566 0.90248 0.90305 0.91286 0.90908 0.89919 0.90833 0.88860 0.93052 0.88899 0.93046 0.90601 0.90628 0.92868 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 10 C -0.10 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C -0.11 -1.91 5.81 -27.88 -0.16 -2.07 16 12 C 0.46 7.81 7.96 36.01 0.29 8.10 16 13 O -0.51 -9.94 15.73 -18.75 -0.29 -10.23 16 14 O -0.35 -5.25 10.19 -42.01 -0.43 -5.68 16 15 C 0.07 0.85 5.13 37.16 0.19 1.04 16 16 C 0.09 0.86 2.93 -26.68 -0.08 0.78 16 17 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 18 C -0.15 -1.00 5.06 -26.58 -0.13 -1.13 16 19 C -0.11 -0.65 4.24 -26.59 -0.11 -0.76 16 20 C -0.10 -0.59 0.52 -154.42 -0.08 -0.67 16 21 C -0.14 -0.97 4.55 -26.64 -0.12 -1.09 16 22 C 0.06 0.38 6.57 37.22 0.24 0.63 16 23 O -0.38 -3.08 10.76 -35.23 -0.38 -3.46 16 24 C 0.06 0.34 6.57 37.22 0.24 0.58 16 25 C -0.14 -0.76 4.93 -26.63 -0.13 -0.89 16 26 C 0.07 0.56 5.55 37.14 0.21 0.77 16 27 O -0.36 -3.88 9.88 -38.77 -0.38 -4.27 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.54 6.57 -51.93 -0.34 0.20 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.37 5.04 -51.93 -0.26 0.11 16 41 H 0.08 0.62 6.11 -51.93 -0.32 0.31 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.30 6.54 -51.93 -0.34 -0.04 16 45 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.25 6.69 -51.93 -0.35 -0.09 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -33.22 387.96 -8.99 -42.21 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -8.75 Total: -4.79 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.32 Total: -10.32 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.49 Total: -23.64 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.22 -8.99 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.147 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds