Wall clock time and date at job start Tue Mar 31 2020 14:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48501 * 109.47051 * 240.00305 * 3 2 1 5 5 H 1.48508 * 109.46765 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47562 * 119.99655 * 3 2 1 7 7 C 1.37880 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47528 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47196 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46592 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00303 * 0.02562 * 12 11 10 14 14 O 1.34228 * 119.99603 * 180.02562 * 12 11 10 15 15 C 1.45206 * 117.00001 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47091 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.47354 * 54.99253 * 16 15 14 18 18 C 1.53092 * 109.47249 * 175.00025 * 16 15 14 19 19 C 1.53194 * 109.14447 * 177.65140 * 18 16 15 20 20 C 1.53074 * 109.03079 * 303.14273 * 19 18 16 21 21 C 1.53064 * 109.51153 * 296.72814 * 20 19 18 22 22 C 1.53112 * 109.16137 * 296.89454 * 21 20 19 23 23 O 1.42906 * 109.39922 * 302.52645 * 22 21 20 24 24 C 1.42900 * 114.13663 * 61.18777 * 23 22 21 25 25 C 1.53066 * 109.52110 * 176.96436 * 20 19 18 26 26 C 1.52974 * 109.37021 * 56.82339 * 20 19 18 27 27 O 1.42895 * 109.47678 * 294.98142 * 16 15 14 28 28 H 0.97002 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47208 * 59.99429 * 9 7 2 30 30 H 1.08998 * 109.47300 * 300.00381 * 9 7 2 31 31 H 1.09001 * 109.46610 * 59.99693 * 10 9 7 32 32 H 1.08994 * 109.46895 * 300.00598 * 10 9 7 33 33 H 1.08998 * 109.46820 * 60.00636 * 11 10 9 34 34 H 1.08994 * 109.47315 * 299.99919 * 11 10 9 35 35 H 1.09001 * 109.47157 * 299.99890 * 15 14 12 36 36 H 1.09004 * 109.47122 * 60.00023 * 15 14 12 37 37 H 1.09000 * 109.52311 * 297.54548 * 18 16 15 38 38 H 1.08992 * 109.52457 * 57.68204 * 18 16 15 39 39 H 1.09005 * 109.54637 * 63.00478 * 19 18 16 40 40 H 1.08994 * 109.54676 * 183.27688 * 19 18 16 41 41 H 1.09004 * 109.52528 * 56.79304 * 21 20 19 42 42 H 1.08998 * 109.52680 * 176.98867 * 21 20 19 43 43 H 1.08992 * 109.48891 * 182.54792 * 22 21 20 44 44 H 1.09006 * 109.49661 * 62.50730 * 22 21 20 45 45 H 1.09000 * 109.48228 * 178.83618 * 24 23 22 46 46 H 1.08995 * 109.49923 * 58.80119 * 24 23 22 47 47 H 1.08998 * 109.52252 * 183.00475 * 25 20 19 48 48 H 1.08993 * 109.52425 * 303.19865 * 25 20 19 49 49 H 1.09003 * 109.47814 * 62.55516 * 26 20 19 50 50 H 1.08991 * 109.48039 * 182.59101 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4598 -6.1325 0.0005 13 8 3.6477 -5.9116 0.0001 14 8 2.0124 -7.3980 0.0004 15 6 3.0125 -8.4507 0.0004 16 6 2.3179 -9.8140 0.0009 17 1 1.6274 -9.8703 -0.8406 18 6 3.3673 -10.9215 -0.1249 19 6 2.6696 -12.2840 -0.0646 20 6 1.8734 -12.3797 1.2393 21 6 2.8330 -12.3161 2.4301 22 6 3.7694 -13.5267 2.3861 23 8 2.9941 -14.7271 2.3953 24 6 2.1141 -14.8629 1.2776 25 6 1.1107 -13.7063 1.2766 26 6 0.8835 -11.2160 1.3159 27 8 1.5950 -9.9800 1.2223 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 2.8720 -3.6042 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8535 -5.0451 -0.8886 34 1 0.8540 -5.0446 0.8913 35 1 3.6353 -8.3602 -0.8896 36 1 3.6352 -8.3603 0.8904 37 1 3.8900 -10.8217 -1.0763 38 1 4.0822 -10.8406 0.6938 39 1 1.9930 -12.3851 -0.9132 40 1 3.4161 -13.0776 -0.0951 41 1 3.4202 -11.3993 2.3762 42 1 2.2625 -12.3304 3.3588 43 1 4.4252 -13.5109 3.2565 44 1 4.3703 -13.4890 1.4774 45 1 1.5780 -15.8092 1.3499 46 1 2.6930 -14.8427 0.3543 47 1 0.5022 -13.7513 2.1798 48 1 0.4684 -13.7820 0.3993 49 1 0.1722 -11.2891 0.4931 50 1 0.3479 -11.2562 2.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884573301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:04 Heat of formation + Delta-G solvation = -229.352153 kcal Electronic energy + Delta-G solvation = -28010.830003 eV Core-core repulsion = 24001.167156 eV Total energy + Delta-G solvation = -4009.662846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86254 -41.40191 -39.27507 -37.69731 -36.16790 -35.55266 -34.15906 -33.87696 -32.08635 -30.51976 -29.60074 -27.98508 -26.16897 -24.96121 -24.47158 -23.90785 -22.67992 -22.23920 -21.34534 -19.53107 -18.70986 -18.40733 -18.14547 -17.58414 -17.29989 -17.15536 -16.78813 -16.48753 -16.22856 -15.91703 -15.70465 -15.48603 -15.38847 -15.21249 -14.41602 -14.18216 -13.93044 -13.88173 -13.80394 -13.37452 -13.34509 -13.14387 -13.07507 -12.88301 -12.64077 -12.53422 -12.46871 -12.26421 -12.19762 -12.02247 -11.74995 -11.65927 -11.60138 -11.55665 -11.38810 -11.21705 -11.09656 -11.06656 -10.77888 -10.53577 -10.09313 -8.19499 -6.29696 1.17839 1.40681 1.43519 1.51383 1.63006 2.42324 2.65818 2.98592 3.13663 3.47256 3.58573 3.65171 3.69486 3.85752 3.94009 3.98168 4.08604 4.13984 4.16097 4.18723 4.25805 4.32566 4.35264 4.42487 4.50652 4.60981 4.64038 4.65018 4.71353 4.73406 4.79087 4.85530 4.90073 4.91133 4.97895 5.04048 5.05179 5.07964 5.15184 5.17915 5.32265 5.36875 5.40687 5.53186 5.72911 5.86094 6.21249 6.26352 6.28752 6.74008 6.85553 7.38815 8.91810 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.001721 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.566436 B =16267.254216 C =16460.476928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.086 4.086 11 C -0.106 4.106 12 C 0.470 3.530 13 O -0.540 6.540 14 O -0.354 6.354 15 C 0.066 3.934 16 C 0.096 3.904 17 H 0.076 0.924 18 C -0.145 4.145 19 C -0.111 4.111 20 C -0.092 4.092 21 C -0.139 4.139 22 C 0.059 3.941 23 O -0.405 6.405 24 C 0.056 3.944 25 C -0.140 4.140 26 C 0.069 3.931 27 O -0.392 6.392 28 H 0.265 0.735 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -34.425 -0.119 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.143 4.143 12 C 0.315 3.685 13 O -0.430 6.430 14 O -0.270 6.270 15 C -0.008 4.008 16 C 0.038 3.962 17 H 0.094 0.906 18 C -0.183 4.183 19 C -0.148 4.148 20 C -0.092 4.092 21 C -0.177 4.177 22 C -0.018 4.018 23 O -0.324 6.324 24 C -0.021 4.021 25 C -0.177 4.177 26 C -0.007 4.007 27 O -0.311 6.311 28 H 0.073 0.927 29 H 0.023 0.977 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.638 -34.293 0.170 34.485 hybrid contribution 0.353 1.184 -0.159 1.245 sum 3.991 -33.109 0.012 33.349 Atomic orbital electron populations 1.70062 1.07524 1.27866 1.51411 1.25918 0.95828 1.03117 0.94702 0.85538 0.78341 0.78336 0.79053 1.19356 1.20508 1.19458 1.21643 0.93439 0.92607 1.50921 0.92747 1.19019 0.94211 0.92180 0.95859 1.21270 0.97888 0.92127 1.01060 1.21505 0.97077 0.88728 1.06979 1.24170 0.89329 0.84118 0.70891 1.90628 1.19631 1.85714 1.47039 1.86554 1.41241 1.15519 1.83724 1.23301 0.89994 0.84064 1.03440 1.22134 0.94181 0.91628 0.88209 0.90597 1.22161 0.97883 0.93949 1.04266 1.21735 0.99800 0.96544 0.96681 1.21144 0.96379 0.95726 0.95961 1.22131 0.98522 0.99065 0.97948 1.22684 0.92858 0.83556 1.02666 1.87911 1.56483 1.41040 1.47013 1.22745 0.91297 0.98923 0.89100 1.22134 0.98474 0.93365 1.03757 1.22730 0.92935 0.82210 1.02824 1.87999 1.66230 1.38634 1.38272 0.92670 0.97750 0.97930 0.93464 0.93166 0.86215 0.86630 0.88682 0.91399 0.88722 0.90670 0.90196 0.89897 0.90828 0.91994 0.88695 0.92048 0.87896 0.91989 0.91217 0.89075 0.91982 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.69 4.44 30.59 0.14 -3.55 16 11 C -0.11 -3.54 5.81 29.85 0.17 -3.37 16 12 C 0.47 15.62 7.96 71.24 0.57 16.19 16 13 O -0.54 -20.90 15.73 21.96 0.35 -20.55 16 14 O -0.35 -10.13 10.19 -48.76 -0.50 -10.63 16 15 C 0.07 1.47 5.13 71.98 0.37 1.84 16 16 C 0.10 1.64 2.93 30.63 0.09 1.73 16 17 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 18 C -0.15 -1.65 5.06 30.69 0.16 -1.49 16 19 C -0.11 -0.98 4.24 30.68 0.13 -0.85 16 20 C -0.09 -1.00 0.52 -52.12 -0.03 -1.03 16 21 C -0.14 -1.82 4.55 30.65 0.14 -1.68 16 22 C 0.06 0.71 6.57 72.02 0.47 1.18 16 23 O -0.41 -6.02 10.76 -148.98 -1.60 -7.63 16 24 C 0.06 0.52 6.57 72.02 0.47 0.99 16 25 C -0.14 -1.21 4.93 30.66 0.15 -1.06 16 26 C 0.07 0.99 5.55 71.97 0.40 1.39 16 27 O -0.39 -8.06 9.88 -145.60 -1.44 -9.50 16 28 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 29 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 32 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 33 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.10 1.90 8.13 -2.39 -0.02 1.88 16 36 H 0.07 1.64 8.13 -2.38 -0.02 1.62 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.93 6.57 -2.39 -0.02 0.91 16 39 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.08 0.61 5.04 -2.39 -0.01 0.60 16 41 H 0.07 1.09 6.11 -2.38 -0.01 1.08 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 0.60 6.54 -2.38 -0.02 0.59 16 45 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 0.45 6.69 -2.39 -0.02 0.43 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 50 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -70.98 387.96 4.10 -66.88 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.90 Total: 9.79 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.07 Total: -19.31 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -3.19 Total: -48.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.98 4.10 -66.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884573301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.470 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds