Wall clock time and date at job start Tue Mar 31 2020 14:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48503 * 109.47540 * 270.00600 * 3 2 1 5 5 H 1.48505 * 109.46824 * 30.00371 * 3 2 1 6 6 H 1.48504 * 109.46964 * 150.00195 * 3 2 1 7 7 C 1.37874 * 120.00467 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47115 * 180.02562 * 10 9 7 12 12 O 1.45204 * 109.47165 * 180.02562 * 11 10 9 13 13 C 1.34222 * 116.99994 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00133 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47567 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47551 * 304.99997 * 16 15 13 18 18 C 1.53096 * 109.47762 * 184.98581 * 16 15 13 19 19 C 1.53219 * 109.14557 * 182.35611 * 18 16 15 20 20 C 1.53045 * 109.04918 * 56.82420 * 19 18 16 21 21 C 1.53066 * 109.55312 * 63.31228 * 20 19 18 22 22 C 1.53109 * 109.15960 * 176.86410 * 21 20 19 23 23 O 1.42902 * 109.40341 * 302.53096 * 22 21 20 24 24 C 1.42908 * 114.14157 * 61.17394 * 23 22 21 25 25 C 1.53069 * 109.56731 * 183.11858 * 20 19 18 26 26 C 1.52985 * 109.37241 * 303.21967 * 20 19 18 27 27 O 1.42899 * 109.47387 * 65.01336 * 16 15 13 28 28 H 0.96997 * 120.00684 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47094 * 60.00442 * 9 7 2 30 30 H 1.08992 * 109.47550 * 300.01003 * 9 7 2 31 31 H 1.08994 * 109.46930 * 60.00389 * 10 9 7 32 32 H 1.09003 * 109.47097 * 300.00586 * 10 9 7 33 33 H 1.08994 * 109.47378 * 60.00082 * 11 10 9 34 34 H 1.09003 * 109.46617 * 299.99976 * 11 10 9 35 35 H 1.09005 * 109.47401 * 59.99392 * 15 13 12 36 36 H 1.09007 * 109.46838 * 300.00184 * 15 13 12 37 37 H 1.08998 * 109.52380 * 302.25287 * 18 16 15 38 38 H 1.08998 * 109.52346 * 62.44550 * 18 16 15 39 39 H 1.08995 * 109.53656 * 296.94913 * 19 18 16 40 40 H 1.09007 * 109.60297 * 176.73365 * 19 18 16 41 41 H 1.09006 * 109.51885 * 296.76626 * 21 20 19 42 42 H 1.08998 * 109.52554 * 56.95652 * 21 20 19 43 43 H 1.08994 * 109.48676 * 182.55040 * 22 21 20 44 44 H 1.09003 * 109.49297 * 62.50944 * 22 21 20 45 45 H 1.09010 * 109.48232 * 178.84472 * 24 23 22 46 46 H 1.08999 * 109.49737 * 58.80642 * 24 23 22 47 47 H 1.08999 * 109.52281 * 303.04420 * 25 20 19 48 48 H 1.09003 * 109.52720 * 63.23395 * 25 20 19 49 49 H 1.09004 * 109.47861 * 297.43302 * 26 20 19 50 50 H 1.09002 * 109.48698 * 177.41508 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0467 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 8 2.4241 -6.0907 -0.0006 13 6 1.9111 -7.3310 -0.0005 14 8 0.7132 -7.4894 -0.0004 15 6 2.8291 -8.5261 -0.0004 16 6 1.9959 -9.8093 0.0003 17 1 1.3040 -9.7929 0.8423 18 6 2.9239 -11.0205 0.1258 19 6 2.0874 -12.3028 0.0665 20 6 1.2839 -12.3152 -1.2360 21 6 2.2423 -12.3534 -2.4289 22 6 1.4299 -12.4447 -3.7234 23 8 0.5944 -13.6032 -3.6790 24 6 -0.3556 -13.5981 -2.6114 25 6 0.3849 -13.5536 -1.2719 26 6 0.4214 -11.0540 -1.3122 27 8 1.2587 -9.8994 -1.2206 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8895 31 1 2.8720 -3.6043 0.8894 32 1 2.8722 -3.6042 -0.8905 33 1 0.8542 -5.0446 -0.8913 34 1 0.8536 -5.0450 0.8886 35 1 3.4581 -8.5012 0.8895 36 1 3.4579 -8.5013 -0.8905 37 1 3.6420 -11.0157 -0.6943 38 1 3.4551 -10.9754 1.0765 39 1 1.4053 -12.3326 0.9161 40 1 2.7461 -13.1708 0.0969 41 1 2.8455 -11.4456 -2.4406 42 1 2.8934 -13.2235 -2.3453 43 1 2.1078 -12.5179 -4.5737 44 1 0.8106 -11.5538 -3.8278 45 1 -0.9632 -14.5018 -2.6611 46 1 -0.9985 -12.7224 -2.7007 47 1 0.9952 -14.4501 -1.1630 48 1 -0.3380 -13.5028 -0.4576 49 1 -0.2926 -11.0516 -0.4886 50 1 -0.1169 -11.0383 -2.2599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885548981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:56 Heat of formation + Delta-G solvation = -211.072521 kcal Electronic energy + Delta-G solvation = -28251.559706 eV Core-core repulsion = 24242.689524 eV Total energy + Delta-G solvation = -4008.870182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18168 -40.10977 -38.46178 -36.39749 -35.00998 -33.97310 -33.54386 -31.72967 -31.55603 -30.40886 -27.48105 -26.71006 -25.45688 -24.14442 -23.73999 -22.86695 -21.41642 -20.53977 -20.21600 -19.18429 -17.40098 -17.09187 -16.69648 -16.51283 -16.35889 -16.06824 -15.95139 -15.58976 -15.07790 -15.04896 -14.79184 -14.46344 -14.18496 -13.95916 -13.35223 -13.06468 -13.03892 -12.83273 -12.59838 -12.51499 -12.21250 -12.08841 -11.86943 -11.81847 -11.76038 -11.46002 -11.40533 -11.04842 -10.95890 -10.71195 -10.64613 -10.60775 -10.45314 -10.33316 -10.23839 -9.84037 -9.69599 -9.56250 -9.47106 -9.15198 -8.38128 -6.02786 -4.05825 2.44896 2.91486 3.31389 3.37448 3.40999 3.43655 3.51771 4.11305 4.16407 4.24225 4.42542 4.48106 4.48661 4.62040 4.70454 4.76623 4.84094 4.90249 4.98587 5.07535 5.13159 5.18235 5.21736 5.25756 5.32740 5.33050 5.35615 5.41091 5.43073 5.50661 5.54392 5.61441 5.62585 5.67944 5.70188 5.75830 5.86417 5.91369 6.05117 6.55529 6.56426 6.83045 6.89749 6.97691 7.01930 7.61405 7.72647 7.95503 8.03196 8.36980 9.00481 9.58345 11.08655 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001836 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.173901 B =15243.538135 C =15579.207033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.362 6.362 13 C 0.456 3.544 14 O -0.502 6.502 15 C -0.109 4.109 16 C 0.102 3.898 17 H 0.068 0.932 18 C -0.151 4.151 19 C -0.108 4.108 20 C -0.096 4.096 21 C -0.139 4.139 22 C 0.057 3.943 23 O -0.384 6.384 24 C 0.057 3.943 25 C -0.143 4.143 26 C 0.070 3.930 27 O -0.362 6.362 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 -31.493 -1.621 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.003 4.003 12 O -0.279 6.279 13 C 0.299 3.701 14 O -0.390 6.390 15 C -0.146 4.146 16 C 0.044 3.956 17 H 0.086 0.914 18 C -0.189 4.189 19 C -0.146 4.146 20 C -0.096 4.096 21 C -0.177 4.177 22 C -0.020 4.020 23 O -0.303 6.303 24 C -0.020 4.020 25 C -0.181 4.181 26 C -0.007 4.007 27 O -0.280 6.280 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.071 0.929 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.012 -31.378 -1.893 31.690 hybrid contribution 0.204 1.011 0.465 1.131 sum 4.216 -30.366 -1.428 30.691 Atomic orbital electron populations 1.69965 1.06082 1.26747 1.50576 1.25038 0.94890 0.99379 0.95235 0.86541 0.79788 0.83224 0.78131 1.20612 1.21205 1.19824 1.21176 0.93119 0.90689 1.50932 0.92427 1.19054 0.93857 0.90779 0.97665 1.21758 0.99905 0.91091 1.01897 1.23460 0.91195 0.83649 1.02041 1.86483 1.42720 1.15291 1.83368 1.23376 0.88708 0.84963 0.73088 1.90667 1.16876 1.86738 1.44717 1.21425 0.97755 0.88988 1.06462 1.21851 0.92699 0.92450 0.88648 0.91425 1.22260 0.98791 0.94512 1.03319 1.21604 0.98632 0.97801 0.96529 1.21189 0.96550 0.95822 0.96075 1.22167 0.98236 1.03167 0.94119 1.22659 0.93225 0.88343 0.97765 1.87928 1.49700 1.42489 1.50160 1.22619 0.90889 1.02249 0.86209 1.22188 0.99436 0.97978 0.98499 1.22669 0.91767 0.83897 1.02338 1.88002 1.59420 1.43134 1.37475 0.92900 0.96240 0.96265 0.92204 0.92178 0.91586 0.91678 0.86461 0.87022 0.90417 0.90410 0.91536 0.91153 0.89876 0.91200 0.88837 0.92624 0.88842 0.92957 0.90681 0.90685 0.92908 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 11 C 0.07 1.32 5.47 37.16 0.20 1.52 16 12 O -0.36 -6.12 10.22 -39.24 -0.40 -6.52 16 13 C 0.46 6.91 7.84 36.00 0.28 7.20 16 14 O -0.50 -9.11 15.17 -24.05 -0.36 -9.48 16 15 C -0.11 -1.07 5.52 -27.89 -0.15 -1.22 16 16 C 0.10 0.96 2.19 -26.68 -0.06 0.91 16 17 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 18 C -0.15 -0.98 5.06 -26.57 -0.13 -1.12 16 19 C -0.11 -0.67 4.81 -26.59 -0.13 -0.80 16 20 C -0.10 -0.67 0.51 -154.42 -0.08 -0.74 16 21 C -0.14 -0.99 4.47 -26.64 -0.12 -1.11 16 22 C 0.06 0.44 6.57 37.21 0.24 0.68 16 23 O -0.38 -3.46 10.76 -35.23 -0.38 -3.84 16 24 C 0.06 0.39 6.57 37.22 0.24 0.63 16 25 C -0.14 -0.87 4.92 -26.64 -0.13 -1.00 16 26 C 0.07 0.63 4.98 37.15 0.18 0.82 16 27 O -0.36 -4.16 9.03 -49.67 -0.45 -4.60 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.49 6.72 -51.93 -0.35 0.14 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.63 6.26 -51.93 -0.33 0.30 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.46 6.56 -51.93 -0.34 0.11 16 45 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.05 0.35 6.67 -51.93 -0.35 0.00 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.83 5.04 -51.93 -0.26 0.57 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -33.22 386.97 -9.15 -42.37 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -8.76 Total: -4.33 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.34 Total: -9.80 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.59 Total: -24.44 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.22 -9.15 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885548981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.704 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds