Wall clock time and date at job start Tue Mar 31 2020 14:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48503 * 109.47540 * 270.00600 * 3 2 1 5 5 H 1.48505 * 109.46824 * 30.00371 * 3 2 1 6 6 H 1.48504 * 109.46964 * 150.00195 * 3 2 1 7 7 C 1.37874 * 120.00467 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47115 * 180.02562 * 10 9 7 12 12 O 1.45204 * 109.47165 * 180.02562 * 11 10 9 13 13 C 1.34222 * 116.99994 * 179.97438 * 12 11 10 14 14 O 1.20830 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00133 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47567 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47551 * 304.99997 * 16 15 13 18 18 C 1.53096 * 109.47762 * 184.98581 * 16 15 13 19 19 C 1.53219 * 109.14557 * 182.35611 * 18 16 15 20 20 C 1.53045 * 109.04918 * 56.82420 * 19 18 16 21 21 C 1.53066 * 109.55312 * 63.31228 * 20 19 18 22 22 C 1.53109 * 109.15960 * 176.86410 * 21 20 19 23 23 O 1.42902 * 109.40341 * 302.53096 * 22 21 20 24 24 C 1.42908 * 114.14157 * 61.17394 * 23 22 21 25 25 C 1.53069 * 109.56731 * 183.11858 * 20 19 18 26 26 C 1.52985 * 109.37241 * 303.21967 * 20 19 18 27 27 O 1.42899 * 109.47387 * 65.01336 * 16 15 13 28 28 H 0.96997 * 120.00684 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.47094 * 60.00442 * 9 7 2 30 30 H 1.08992 * 109.47550 * 300.01003 * 9 7 2 31 31 H 1.08994 * 109.46930 * 60.00389 * 10 9 7 32 32 H 1.09003 * 109.47097 * 300.00586 * 10 9 7 33 33 H 1.08994 * 109.47378 * 60.00082 * 11 10 9 34 34 H 1.09003 * 109.46617 * 299.99976 * 11 10 9 35 35 H 1.09005 * 109.47401 * 59.99392 * 15 13 12 36 36 H 1.09007 * 109.46838 * 300.00184 * 15 13 12 37 37 H 1.08998 * 109.52380 * 302.25287 * 18 16 15 38 38 H 1.08998 * 109.52346 * 62.44550 * 18 16 15 39 39 H 1.08995 * 109.53656 * 296.94913 * 19 18 16 40 40 H 1.09007 * 109.60297 * 176.73365 * 19 18 16 41 41 H 1.09006 * 109.51885 * 296.76626 * 21 20 19 42 42 H 1.08998 * 109.52554 * 56.95652 * 21 20 19 43 43 H 1.08994 * 109.48676 * 182.55040 * 22 21 20 44 44 H 1.09003 * 109.49297 * 62.50944 * 22 21 20 45 45 H 1.09010 * 109.48232 * 178.84472 * 24 23 22 46 46 H 1.08999 * 109.49737 * 58.80642 * 24 23 22 47 47 H 1.08999 * 109.52281 * 303.04420 * 25 20 19 48 48 H 1.09003 * 109.52720 * 63.23395 * 25 20 19 49 49 H 1.09004 * 109.47861 * 297.43302 * 26 20 19 50 50 H 1.09002 * 109.48698 * 177.41508 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0467 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 8 2.4241 -6.0907 -0.0006 13 6 1.9111 -7.3310 -0.0005 14 8 0.7132 -7.4894 -0.0004 15 6 2.8291 -8.5261 -0.0004 16 6 1.9959 -9.8093 0.0003 17 1 1.3040 -9.7929 0.8423 18 6 2.9239 -11.0205 0.1258 19 6 2.0874 -12.3028 0.0665 20 6 1.2839 -12.3152 -1.2360 21 6 2.2423 -12.3534 -2.4289 22 6 1.4299 -12.4447 -3.7234 23 8 0.5944 -13.6032 -3.6790 24 6 -0.3556 -13.5981 -2.6114 25 6 0.3849 -13.5536 -1.2719 26 6 0.4214 -11.0540 -1.3122 27 8 1.2587 -9.8994 -1.2206 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8895 31 1 2.8720 -3.6043 0.8894 32 1 2.8722 -3.6042 -0.8905 33 1 0.8542 -5.0446 -0.8913 34 1 0.8536 -5.0450 0.8886 35 1 3.4581 -8.5012 0.8895 36 1 3.4579 -8.5013 -0.8905 37 1 3.6420 -11.0157 -0.6943 38 1 3.4551 -10.9754 1.0765 39 1 1.4053 -12.3326 0.9161 40 1 2.7461 -13.1708 0.0969 41 1 2.8455 -11.4456 -2.4406 42 1 2.8934 -13.2235 -2.3453 43 1 2.1078 -12.5179 -4.5737 44 1 0.8106 -11.5538 -3.8278 45 1 -0.9632 -14.5018 -2.6611 46 1 -0.9985 -12.7224 -2.7007 47 1 0.9952 -14.4501 -1.1630 48 1 -0.3380 -13.5028 -0.4576 49 1 -0.2926 -11.0516 -0.4886 50 1 -0.1169 -11.0383 -2.2599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885548981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:55 Heat of formation + Delta-G solvation = -229.983160 kcal Electronic energy + Delta-G solvation = -28252.379732 eV Core-core repulsion = 24242.689524 eV Total energy + Delta-G solvation = -4009.690209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88901 -41.28080 -39.18483 -37.76006 -35.93470 -35.66859 -34.30145 -33.65973 -32.11878 -31.15926 -29.05839 -27.73148 -26.17894 -25.29819 -24.61208 -23.99300 -22.17165 -22.04991 -21.55272 -19.80493 -18.75778 -18.37146 -17.96273 -17.50076 -17.27894 -17.11549 -16.92398 -16.51082 -16.33205 -15.75461 -15.70385 -15.55954 -15.35408 -14.92055 -14.40530 -14.07641 -13.99303 -13.85637 -13.69958 -13.60703 -13.46529 -13.09339 -13.03177 -12.80892 -12.68308 -12.51172 -12.38819 -12.30339 -12.10865 -12.05845 -11.95818 -11.76774 -11.63283 -11.40892 -11.40176 -11.27655 -11.19122 -10.99879 -10.58342 -10.46581 -10.19311 -8.22450 -6.34321 1.24726 1.41031 1.42871 1.53981 1.69906 2.41017 2.73914 2.96139 3.11211 3.54446 3.59781 3.64234 3.67635 3.84919 3.98567 4.03077 4.07060 4.08319 4.16484 4.17195 4.26031 4.34223 4.40598 4.48742 4.52896 4.54263 4.62835 4.64184 4.72954 4.78579 4.79702 4.82420 4.90072 4.92830 4.96841 5.06324 5.07160 5.08379 5.16494 5.20975 5.32644 5.39390 5.43962 5.56665 5.62243 5.79023 6.18090 6.25542 6.27265 6.76582 6.82180 7.35238 8.89824 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001836 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.173901 B =15243.538135 C =15579.207033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.079 3.921 12 O -0.361 6.361 13 C 0.451 3.549 14 O -0.538 6.538 15 C -0.101 4.101 16 C 0.098 3.902 17 H 0.053 0.947 18 C -0.143 4.143 19 C -0.107 4.107 20 C -0.091 4.091 21 C -0.133 4.133 22 C 0.053 3.947 23 O -0.402 6.402 24 C 0.051 3.949 25 C -0.138 4.138 26 C 0.068 3.932 27 O -0.390 6.390 28 H 0.264 0.736 29 H -0.006 1.006 30 H -0.004 1.004 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.106 0.894 46 H 0.048 0.952 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 -32.604 -1.041 33.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.006 3.994 12 O -0.278 6.278 13 C 0.296 3.704 14 O -0.427 6.427 15 C -0.137 4.137 16 C 0.040 3.960 17 H 0.071 0.929 18 C -0.180 4.180 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.171 4.171 22 C -0.023 4.023 23 O -0.321 6.321 24 C -0.025 4.025 25 C -0.176 4.176 26 C -0.008 4.008 27 O -0.309 6.309 28 H 0.073 0.927 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.063 0.937 45 H 0.124 0.876 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.493 -32.514 -1.311 33.182 hybrid contribution -0.640 1.303 0.263 1.476 sum 5.853 -31.211 -1.048 31.772 Atomic orbital electron populations 1.70104 1.07927 1.27951 1.51459 1.26048 0.95824 1.03647 0.94600 0.85359 0.78642 0.77974 0.78532 1.19735 1.20809 1.18439 1.21624 0.93781 0.91802 1.50845 0.91556 1.18942 0.94293 0.92636 0.95332 1.21452 0.98681 0.90366 1.02581 1.23051 0.91004 0.83979 1.01390 1.86481 1.41933 1.15681 1.83692 1.24545 0.89222 0.85176 0.71477 1.90658 1.18785 1.86921 1.46360 1.21673 0.97050 0.86089 1.08927 1.21982 0.92925 0.93639 0.87462 0.92935 1.22219 0.98189 0.92852 1.04757 1.21622 0.98760 0.98260 0.95816 1.21140 0.96436 0.94891 0.96702 1.22112 0.98075 1.03271 0.93640 1.22711 0.93225 0.87678 0.98677 1.87899 1.50212 1.42871 1.51122 1.22768 0.90793 1.02743 0.86241 1.22155 0.99496 0.97701 0.98221 1.22711 0.91932 0.84483 1.01697 1.87959 1.60072 1.44379 1.38475 0.92679 0.98727 0.98551 0.91281 0.91523 0.92568 0.92164 0.82914 0.85203 0.89690 0.88285 0.91434 0.89605 0.90175 0.90420 0.88135 0.93722 0.87579 0.93381 0.90029 0.89783 0.93583 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.09 -3.94 5.53 30.60 0.17 -3.77 16 11 C 0.08 3.05 5.47 71.98 0.39 3.45 16 12 O -0.36 -11.91 10.22 -51.34 -0.52 -12.44 16 13 C 0.45 13.36 7.84 71.23 0.56 13.91 16 14 O -0.54 -19.83 15.17 27.02 0.41 -19.42 16 15 C -0.10 -1.75 5.52 29.85 0.16 -1.58 16 16 C 0.10 1.71 2.19 30.63 0.07 1.77 16 17 H 0.05 1.07 7.96 -2.39 -0.02 1.05 16 18 C -0.14 -1.44 5.06 30.70 0.16 -1.28 16 19 C -0.11 -1.05 4.81 30.68 0.15 -0.91 16 20 C -0.09 -1.14 0.51 -52.13 -0.03 -1.17 16 21 C -0.13 -1.71 4.47 30.65 0.14 -1.57 16 22 C 0.05 0.81 6.57 72.02 0.47 1.28 16 23 O -0.40 -7.02 10.76 -148.98 -1.60 -8.62 16 24 C 0.05 0.66 6.57 72.02 0.47 1.13 16 25 C -0.14 -1.47 4.92 30.66 0.15 -1.32 16 26 C 0.07 1.23 4.98 71.98 0.36 1.59 16 27 O -0.39 -8.84 9.03 -135.18 -1.22 -10.06 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 35 H 0.15 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.08 0.77 6.72 -2.39 -0.02 0.76 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.08 1.08 6.26 -2.38 -0.01 1.07 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 0.76 6.56 -2.39 -0.02 0.74 16 45 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.05 0.65 6.67 -2.39 -0.02 0.63 16 47 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.09 1.61 5.04 -2.39 -0.01 1.60 16 Total: -1.00 -72.79 386.97 4.34 -68.45 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.90 Total: 10.42 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.07 Total: -17.46 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.94 Total: -50.54 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -72.79 4.34 -68.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885548981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.538 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds