Wall clock time and date at job start Tue Mar 31 2020 14:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99802 * 2 1 4 4 H 1.48498 * 109.47533 * 270.00562 * 3 2 1 5 5 H 1.48497 * 109.46763 * 30.00849 * 3 2 1 6 6 H 1.48499 * 109.46960 * 150.00815 * 3 2 1 7 7 C 1.37875 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47529 * 175.88393 * 9 7 2 11 11 C 1.46909 * 110.99872 * 59.90065 * 10 9 7 12 12 C 1.50705 * 109.46626 * 72.27083 * 11 10 9 13 13 C 1.39870 * 126.03736 * 267.09987 * 12 11 10 14 14 N 1.30834 * 108.20096 * 179.82053 * 13 12 11 15 15 N 1.40082 * 108.20608 * 0.44178 * 14 13 12 16 16 C 1.46504 * 126.03848 * 179.74063 * 15 14 13 17 17 C 1.53779 * 113.61330 * 194.11475 * 16 15 14 18 18 C 1.53956 * 87.01946 * 220.04652 * 17 16 15 19 19 C 1.53776 * 113.61564 * 96.50109 * 16 15 14 20 20 C 1.34948 * 107.92567 * 359.72072 * 15 14 13 21 21 C 1.46900 * 111.00277 * 295.95597 * 10 9 7 22 22 C 1.50708 * 109.46428 * 293.95243 * 21 10 9 23 23 C 1.38665 * 120.42049 * 90.00081 * 22 21 10 24 24 C 1.38633 * 118.42089 * 179.97438 * 23 22 21 25 25 C 1.38220 * 119.15850 * 0.24753 * 24 23 22 26 26 N 1.31852 * 120.76583 * 359.49903 * 25 24 23 27 27 C 1.31885 * 121.72465 * 0.49660 * 26 25 24 28 28 H 0.96998 * 120.00225 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47311 * 55.87998 * 9 7 2 30 30 H 1.09005 * 109.47102 * 295.88485 * 9 7 2 31 31 H 1.08997 * 109.46863 * 192.26430 * 11 10 9 32 32 H 1.08995 * 109.47448 * 312.27149 * 11 10 9 33 33 H 1.08001 * 125.89784 * 0.02562 * 13 12 11 34 34 H 1.08997 * 112.84783 * 325.30527 * 16 15 14 35 35 H 1.09001 * 113.61348 * 334.55975 * 17 16 15 36 36 H 1.08995 * 113.61826 * 105.46890 * 17 16 15 37 37 H 1.09002 * 113.53433 * 270.81290 * 18 17 16 38 38 H 1.08995 * 113.74936 * 139.94565 * 18 17 16 39 39 H 1.08991 * 113.62010 * 254.53049 * 19 16 15 40 40 H 1.09004 * 113.61526 * 25.43982 * 19 16 15 41 41 H 1.07999 * 126.13030 * 180.02562 * 20 15 14 42 42 H 1.08995 * 109.48033 * 173.95379 * 21 10 9 43 43 H 1.09000 * 109.47009 * 53.94353 * 21 10 9 44 44 H 1.08003 * 120.79123 * 359.95073 * 23 22 21 45 45 H 1.08003 * 120.41538 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.61623 * 179.75105 * 25 24 23 47 47 H 1.08005 * 119.61356 * 179.74926 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6525 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2025 -3.6139 -0.1006 11 6 3.1400 -3.6090 1.0305 12 6 2.4196 -4.0409 2.2818 13 6 1.8070 -3.1951 3.2122 14 7 1.2860 -3.9355 4.1567 15 7 1.5598 -5.2773 3.8620 16 6 1.1602 -6.4352 4.6657 17 6 1.8876 -7.7338 4.2795 18 6 0.5414 -8.4531 4.4811 19 6 -0.1352 -7.1056 4.1786 20 6 2.2564 -5.3151 2.7068 21 6 2.9222 -3.5786 -1.3807 22 6 1.9543 -3.8310 -2.5080 23 6 1.2956 -2.7741 -3.1177 24 6 0.4146 -3.0536 -4.1510 25 6 0.2197 -4.3676 -4.5330 26 7 0.8673 -5.3473 -3.9336 27 6 1.7127 -5.1186 -2.9475 28 1 -0.4850 0.8400 0.0004 29 1 0.5699 -2.5254 -0.8510 30 1 0.6813 -2.5897 0.9243 31 1 3.9591 -4.2985 0.8265 32 1 3.5374 -2.6035 1.1688 33 1 1.7676 -2.1171 3.1583 34 1 1.1702 -6.2310 5.7364 35 1 2.2393 -7.7470 3.2479 36 1 2.6550 -8.0334 4.9932 37 1 0.3829 -8.8019 5.5016 38 1 0.3380 -9.2212 3.7350 39 1 -0.9985 -6.8988 4.8110 40 1 -0.3375 -6.9468 3.1194 41 1 2.6184 -6.2033 2.2103 42 1 3.6939 -4.3483 -1.3852 43 1 3.3843 -2.6000 -1.5109 44 1 1.4645 -1.7573 -2.7951 45 1 -0.1160 -2.2550 -4.6483 46 1 -0.4679 -4.5941 -5.3344 47 1 2.2218 -5.9473 -2.4779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891458216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:57 Heat of formation + Delta-G solvation = 125.693683 kcal Electronic energy + Delta-G solvation = -27632.723875 eV Core-core repulsion = 24010.351393 eV Total energy + Delta-G solvation = -3622.372482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.19083 -40.99353 -39.39507 -38.23654 -34.57321 -33.71289 -32.67260 -32.19448 -31.28021 -28.98360 -27.52966 -26.64463 -26.10470 -25.43505 -24.28096 -23.44653 -22.16035 -21.67088 -20.96319 -20.02042 -18.67017 -17.85558 -17.76558 -17.17137 -16.69532 -16.65416 -16.33476 -15.97704 -15.54952 -15.40235 -15.13756 -14.84931 -14.44406 -14.29072 -14.04109 -13.87605 -13.83635 -13.43461 -13.33888 -13.18979 -13.04397 -12.79428 -12.70586 -12.51047 -12.22254 -12.17247 -12.05038 -11.87157 -11.62025 -11.51741 -11.48141 -11.22926 -10.59300 -10.45808 -10.30461 -10.16173 -9.80620 -9.18372 -8.82542 -8.04968 -6.22906 0.32897 0.49056 1.07524 1.36951 1.40429 1.48014 1.75116 1.96613 2.41243 2.99477 3.19826 3.34261 3.56661 3.68175 3.78215 3.82312 3.85946 3.99672 4.06258 4.13186 4.17821 4.27237 4.31261 4.53665 4.59303 4.62395 4.65517 4.73546 4.76456 4.88036 4.92324 4.96150 4.99098 5.04654 5.07412 5.09618 5.13086 5.37142 5.37912 5.41872 5.48063 5.49970 5.62748 5.82626 5.87634 5.93191 6.16824 6.33710 6.37918 6.67360 6.89268 6.99884 7.13346 7.47298 8.95642 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009021 B = 0.004407 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.232114 B = 6351.353667 C = 8606.849284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.021 3.979 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.210 3.790 10 N -0.530 5.530 11 C 0.138 3.862 12 C -0.226 4.226 13 C 0.048 3.952 14 N -0.342 5.342 15 N -0.365 5.365 16 C 0.119 3.881 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.155 4.155 20 C 0.075 3.925 21 C 0.102 3.898 22 C -0.119 4.119 23 C -0.071 4.071 24 C -0.182 4.182 25 C 0.084 3.916 26 N -0.509 5.509 27 C 0.105 3.895 28 H 0.259 0.741 29 H 0.007 0.993 30 H -0.007 1.007 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.157 0.843 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.203 0.797 42 H 0.101 0.899 43 H 0.035 0.965 44 H 0.113 0.887 45 H 0.144 0.856 46 H 0.180 0.820 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -16.562 2.095 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.179 4.179 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.083 3.917 10 N -0.253 5.253 11 C 0.009 3.991 12 C -0.238 4.238 13 C -0.137 4.137 14 N -0.164 5.164 15 N -0.147 5.147 16 C 0.018 3.982 17 C -0.171 4.171 18 C -0.157 4.157 19 C -0.194 4.194 20 C -0.072 4.072 21 C -0.026 4.026 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.202 4.202 25 C -0.072 4.072 26 N -0.218 5.218 27 C -0.052 4.052 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.011 0.989 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.175 0.825 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.219 0.781 42 H 0.119 0.881 43 H 0.053 0.947 44 H 0.131 0.869 45 H 0.162 0.838 46 H 0.197 0.803 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.257 -17.864 3.041 18.615 hybrid contribution 0.707 3.732 -0.344 3.814 sum 4.964 -14.132 2.697 15.220 Atomic orbital electron populations 1.70085 1.07459 1.27185 1.51741 1.25598 0.95186 1.01933 0.95156 0.85838 0.78977 0.80402 0.78189 1.20118 1.21707 1.19140 1.21887 0.93220 0.92515 1.49851 0.92250 1.19274 0.91306 0.86309 0.94783 1.62533 1.17218 1.44796 1.00723 1.20204 0.92759 0.99434 0.86662 1.20042 1.11199 0.92305 1.00247 1.23725 0.96979 0.99853 0.93173 1.77190 1.25333 0.88416 1.25430 1.48860 1.42222 1.04768 1.18834 1.23379 0.98100 0.80733 0.95992 1.23432 0.98549 0.91155 1.03964 1.22707 0.93881 0.95152 1.03963 1.23449 0.96951 0.97409 1.01576 1.22497 0.96834 0.99356 0.88545 1.20880 0.93724 1.00782 0.87184 1.20875 0.99439 0.94313 0.97502 1.21721 0.94309 0.99843 0.93862 1.22322 0.99885 0.99290 0.98663 1.23081 0.97225 0.88198 0.98744 1.67693 1.07919 1.36919 1.09229 1.22843 0.94389 0.95539 0.92439 0.93163 0.97509 0.98856 0.88956 0.94959 0.82531 0.86238 0.88456 0.88250 0.87752 0.89114 0.90804 0.91164 0.78063 0.88114 0.94714 0.86852 0.83783 0.80290 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 13.29 21.45 0.28 -53.89 16 2 C 0.02 1.11 5.46 84.65 0.46 1.57 16 3 Si 0.94 43.01 29.54 68.60 2.03 45.04 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -27.75 7.34 25.60 0.19 -27.57 16 8 H 0.06 3.01 5.95 -2.91 -0.02 2.99 16 9 C 0.21 10.52 4.65 85.56 0.40 10.92 16 10 N -0.53 -20.83 4.65 -909.93 -4.23 -25.06 16 11 C 0.14 4.88 5.29 85.56 0.45 5.33 16 12 C -0.23 -8.18 5.06 -20.14 -0.10 -8.28 16 13 C 0.05 1.98 11.00 85.24 0.94 2.92 16 14 N -0.34 -13.48 12.58 -57.02 -0.72 -14.20 16 15 N -0.36 -11.18 3.81 -325.00 -1.24 -12.42 16 16 C 0.12 2.53 5.02 45.51 0.23 2.76 16 17 C -0.13 -1.76 7.46 31.18 0.23 -1.52 16 18 C -0.12 -1.39 8.09 31.18 0.25 -1.13 16 19 C -0.16 -3.03 7.88 31.12 0.25 -2.79 16 20 C 0.07 2.19 10.60 83.54 0.89 3.08 16 21 C 0.10 3.53 4.96 85.56 0.42 3.95 16 22 C -0.12 -4.18 4.90 -19.77 -0.10 -4.28 16 23 C -0.07 -2.68 8.08 22.47 0.18 -2.50 16 24 C -0.18 -5.87 10.11 22.36 0.23 -5.64 16 25 C 0.08 2.48 11.18 84.69 0.95 3.43 16 26 N -0.51 -16.34 10.36 -195.84 -2.03 -18.37 16 27 C 0.10 3.30 10.86 84.67 0.92 4.22 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.01 0.38 5.90 -2.39 -0.01 0.37 16 30 H -0.01 -0.38 6.73 -2.38 -0.02 -0.40 16 31 H 0.09 2.56 7.80 -2.39 -0.02 2.54 16 32 H 0.03 1.30 6.08 -2.39 -0.01 1.29 16 33 H 0.16 7.04 8.06 -2.91 -0.02 7.02 16 34 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.10 1.25 6.32 -2.39 -0.02 1.23 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 41 H 0.20 4.20 6.69 -2.91 -0.02 4.18 16 42 H 0.10 2.70 7.81 -2.39 -0.02 2.68 16 43 H 0.03 1.33 6.61 -2.39 -0.02 1.32 16 44 H 0.11 4.94 8.02 -2.91 -0.02 4.92 16 45 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 46 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 47 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -69.34 380.78 1.85 -67.49 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.97 Total: 26.95 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 6.78 Total: -15.53 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -7.93 Total: -123.94 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.34 1.85 -67.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891458216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.181 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds