Wall clock time and date at job start Tue Mar 31 2020 14:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99600 * 3 2 1 5 5 H 1.48500 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47263 * 119.99820 * 3 2 1 7 7 C 1.37875 * 119.99418 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00565 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47346 * 185.33857 * 9 7 2 11 11 C 1.46901 * 110.99980 * 197.64026 * 10 9 7 12 12 C 1.50701 * 109.46971 * 66.05146 * 11 10 9 13 13 C 1.35315 * 126.12782 * 94.97811 * 12 11 10 14 14 C 1.39868 * 107.91586 * 180.02562 * 13 12 11 15 15 N 1.30835 * 108.20558 * 359.97438 * 14 13 12 16 16 N 1.34951 * 126.12415 * 274.99529 * 12 11 10 17 17 C 1.46499 * 126.03454 * 0.02562 * 16 12 11 18 18 C 1.53792 * 113.60825 * 219.13202 * 17 16 12 19 19 C 1.53960 * 87.01840 * 220.04657 * 18 17 16 20 20 C 1.53779 * 113.61557 * 121.52857 * 17 16 12 21 21 C 1.46901 * 110.99680 * 73.68836 * 10 9 7 22 22 C 1.50701 * 109.47350 * 286.84060 * 21 10 9 23 23 C 1.38672 * 120.41759 * 276.77397 * 22 21 10 24 24 C 1.38625 * 118.41991 * 179.77838 * 23 22 21 25 25 C 1.38229 * 119.16132 * 0.51788 * 24 23 22 26 26 N 1.31856 * 120.76239 * 359.72420 * 25 24 23 27 27 C 1.31889 * 121.72559 * 359.97438 * 26 25 24 28 28 H 0.97004 * 119.99483 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46450 * 65.33870 * 9 7 2 30 30 H 1.08995 * 109.46714 * 305.34767 * 9 7 2 31 31 H 1.08999 * 109.47313 * 306.04522 * 11 10 9 32 32 H 1.09002 * 109.47155 * 186.04843 * 11 10 9 33 33 H 1.07994 * 126.03883 * 359.74786 * 13 12 11 34 34 H 1.08000 * 125.89493 * 179.97438 * 14 13 12 35 35 H 1.08994 * 112.85106 * 350.32554 * 17 16 12 36 36 H 1.08992 * 113.61464 * 334.56424 * 18 17 16 37 37 H 1.09003 * 113.61100 * 105.47207 * 18 17 16 38 38 H 1.08993 * 113.53577 * 270.81641 * 19 18 17 39 39 H 1.08995 * 113.74221 * 139.94307 * 19 18 17 40 40 H 1.08994 * 113.61623 * 254.52601 * 20 17 16 41 41 H 1.09002 * 113.61109 * 25.42580 * 20 17 16 42 42 H 1.09001 * 109.47237 * 46.84353 * 21 10 9 43 43 H 1.09008 * 109.47051 * 166.84414 * 21 10 9 44 44 H 1.08003 * 120.79259 * 0.02562 * 23 22 21 45 45 H 1.07996 * 120.42073 * 180.21774 * 24 23 22 46 46 H 1.07997 * 119.62462 * 179.74599 * 25 24 23 47 47 H 1.08002 * 119.61984 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2001 -3.6127 0.1300 11 6 1.5822 -4.8814 -0.2781 12 6 1.2774 -4.8400 -1.7534 13 6 2.0657 -5.3165 -2.7446 14 6 1.4173 -5.0801 -3.9612 15 7 0.2804 -4.4836 -3.7094 16 7 0.1694 -4.3207 -2.3226 17 6 -0.9511 -3.6962 -1.6150 18 6 -2.3259 -4.0433 -2.2105 19 6 -2.7164 -2.5757 -1.9577 20 6 -1.2173 -2.2434 -2.0433 21 6 2.7260 -3.6996 1.4989 22 6 3.6988 -2.5733 1.7358 23 6 5.0196 -2.6892 1.3295 24 6 5.8777 -1.6260 1.5640 25 6 5.3944 -0.4980 2.2003 26 7 4.1331 -0.4247 2.5774 27 6 3.2872 -1.4142 2.3654 28 1 -0.4849 0.8401 -0.0004 29 1 0.6982 -2.5996 -0.9337 30 1 0.5541 -2.5163 0.8385 31 1 0.6580 -5.0315 0.2799 32 1 2.2685 -5.7027 -0.0719 33 1 3.0276 -5.7910 -2.6189 34 1 1.7908 -5.3443 -4.9395 35 1 -0.8968 -3.8300 -0.5347 36 1 -2.2895 -4.3097 -3.2668 37 1 -2.8933 -4.7563 -1.6123 38 1 -3.1461 -2.4034 -0.9710 39 1 -3.3079 -2.1346 -2.7599 40 1 -0.8911 -1.5054 -1.3105 41 1 -0.8773 -2.0169 -3.0538 42 1 1.9031 -3.6245 2.2097 43 1 3.2356 -4.6539 1.6325 44 1 5.3704 -3.5848 0.8384 45 1 6.9120 -1.6803 1.2579 46 1 6.0574 0.3330 2.3904 47 1 2.2611 -1.3176 2.6882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891458373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:51 Heat of formation + Delta-G solvation = 157.530780 kcal Electronic energy + Delta-G solvation = -29127.157169 eV Core-core repulsion = 25506.165247 eV Total energy + Delta-G solvation = -3620.991922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96009 -39.55302 -37.87340 -36.77188 -32.75498 -32.41345 -31.31141 -30.81226 -29.79194 -27.61201 -26.06046 -25.20510 -24.80768 -23.76152 -22.79635 -22.05977 -20.99061 -20.45298 -19.29748 -18.44166 -16.85686 -16.47479 -16.35725 -15.77772 -15.13066 -14.93231 -14.82582 -14.54433 -14.13829 -13.92289 -13.78789 -13.23919 -12.95320 -12.91347 -12.62306 -12.39298 -12.25469 -12.13227 -12.03937 -11.74888 -11.68286 -11.61966 -11.06344 -10.82140 -10.73756 -10.60886 -10.37869 -10.31384 -10.09708 -9.95617 -9.76440 -9.36641 -9.02362 -8.74566 -8.67017 -8.47301 -8.02286 -7.93749 -7.50398 -6.10425 -4.05347 1.82815 2.02780 2.38953 3.02906 3.32915 3.39147 3.40222 3.53643 4.40507 4.50649 4.78714 4.94835 5.02355 5.08867 5.13371 5.14071 5.28053 5.35357 5.37224 5.40776 5.44675 5.55344 5.61393 5.68184 5.75061 5.84459 5.93623 5.93654 5.99346 6.14675 6.19077 6.20890 6.23943 6.31533 6.48761 6.50000 6.64757 6.74332 6.84652 6.97552 7.04789 7.10126 7.17799 7.26329 7.44106 7.60196 7.74201 7.92670 8.02503 8.26885 8.39027 8.74936 8.96634 9.55709 10.97635 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.005478 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.495299 B = 5110.417446 C = 6432.233710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.066 3.934 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.249 1.249 7 C -0.490 4.490 8 H 0.065 0.935 9 C 0.167 3.833 10 N -0.527 5.527 11 C 0.115 3.885 12 C 0.107 3.893 13 C -0.270 4.270 14 C 0.033 3.967 15 N -0.299 5.299 16 N -0.342 5.342 17 C 0.136 3.864 18 C -0.142 4.142 19 C -0.137 4.137 20 C -0.158 4.158 21 C 0.110 3.890 22 C -0.100 4.100 23 C -0.067 4.067 24 C -0.194 4.194 25 C 0.084 3.916 26 N -0.494 5.494 27 C 0.164 3.836 28 H 0.262 0.738 29 H 0.055 0.945 30 H -0.006 1.006 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.174 0.826 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.139 0.861 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -9.692 1.025 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.135 4.135 3 Si 0.701 3.299 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.173 1.173 7 C -0.529 4.529 8 H 0.083 0.917 9 C 0.043 3.957 10 N -0.252 5.252 11 C -0.014 4.014 12 C -0.021 4.021 13 C -0.300 4.300 14 C -0.152 4.152 15 N -0.121 5.121 16 N -0.124 5.124 17 C 0.035 3.965 18 C -0.181 4.181 19 C -0.175 4.175 20 C -0.196 4.196 21 C -0.019 4.019 22 C -0.103 4.103 23 C -0.093 4.093 24 C -0.214 4.214 25 C -0.072 4.072 26 N -0.203 5.203 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.012 0.988 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.156 0.844 34 H 0.191 0.809 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.162 0.838 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.156 0.844 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.902 -8.156 0.716 8.237 hybrid contribution 0.897 -0.190 0.045 0.918 sum 1.799 -8.345 0.760 8.571 Atomic orbital electron populations 1.69622 1.05836 1.26895 1.51254 1.24777 0.94724 0.98872 0.95111 0.86864 0.80221 0.83008 0.79853 1.20977 1.21757 1.17328 1.21180 0.93694 0.89379 1.48613 0.91688 1.20423 0.90198 0.87682 0.97401 1.62208 1.38755 1.02622 1.21607 1.20605 0.97994 0.94620 0.88216 1.20867 0.88585 0.96864 0.95826 1.21037 1.02959 1.14768 0.91214 1.23637 0.93191 0.99293 0.99064 1.77163 1.21032 1.22107 0.91786 1.48714 1.15459 1.44250 1.03970 1.23012 0.82489 0.95436 0.95598 1.23395 0.94887 0.97644 1.02135 1.22691 0.97818 0.95224 1.01810 1.23854 0.94317 0.96610 1.04835 1.20772 0.95716 0.95283 0.90080 1.20449 0.94169 0.97331 0.98309 1.21194 0.93076 0.98425 0.96592 1.21849 1.00494 0.95727 1.03347 1.22489 0.92542 0.96556 0.95623 1.67689 1.03302 1.29247 1.20065 1.22444 0.97902 0.87183 0.91802 0.92799 0.92704 0.98779 0.94873 0.89434 0.84351 0.80878 0.86576 0.89022 0.91749 0.90049 0.91440 0.83839 0.90458 0.94338 0.91514 0.85967 0.86203 0.84377 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.48 10.98 55.43 0.61 -22.87 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.87 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.25 -6.09 7.00 56.52 0.40 -5.69 16 7 C -0.49 -12.34 6.07 -34.44 -0.21 -12.55 16 8 H 0.07 1.73 5.76 -52.48 -0.30 1.42 16 9 C 0.17 3.77 3.40 -4.98 -0.02 3.75 16 10 N -0.53 -9.98 4.47 -238.96 -1.07 -11.05 16 11 C 0.12 1.87 5.09 -4.97 -0.03 1.85 16 12 C 0.11 1.92 5.80 -82.26 -0.48 1.44 16 13 C -0.27 -4.49 10.72 -40.01 -0.43 -4.92 16 14 C 0.03 0.55 12.02 -17.37 -0.21 0.34 16 15 N -0.30 -5.65 12.02 30.62 0.37 -5.28 16 16 N -0.34 -6.42 3.32 -49.91 -0.17 -6.58 16 17 C 0.14 2.44 2.90 -67.11 -0.19 2.24 16 18 C -0.14 -2.18 7.78 -25.82 -0.20 -2.38 16 19 C -0.14 -2.17 8.09 -25.82 -0.21 -2.38 16 20 C -0.16 -3.10 6.80 -25.92 -0.18 -3.28 16 21 C 0.11 1.83 5.15 -4.97 -0.03 1.80 16 22 C -0.10 -1.81 3.51 -104.48 -0.37 -2.17 16 23 C -0.07 -1.10 9.85 -39.28 -0.39 -1.49 16 24 C -0.19 -3.07 10.11 -39.44 -0.40 -3.47 16 25 C 0.08 1.47 11.18 -17.54 -0.20 1.27 16 26 N -0.49 -10.02 10.25 -13.25 -0.14 -10.15 16 27 C 0.16 3.27 7.87 -17.55 -0.14 3.14 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.06 1.27 2.34 -51.93 -0.12 1.15 16 30 H -0.01 -0.13 7.81 -51.93 -0.41 -0.54 16 31 H 0.03 0.52 7.28 -51.93 -0.38 0.14 16 32 H 0.09 1.18 7.85 -51.93 -0.41 0.78 16 33 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.12 2.09 6.22 -51.93 -0.32 1.77 16 36 H 0.09 1.47 7.74 -51.93 -0.40 1.06 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.14 3.27 4.85 -51.93 -0.25 3.01 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.04 0.64 7.72 -51.93 -0.40 0.24 16 43 H 0.07 0.91 7.78 -51.92 -0.40 0.51 16 44 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 45 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 47 H 0.15 3.06 7.98 -52.49 -0.42 2.64 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -29.01 368.10 -10.38 -39.39 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.76 Total: 9.77 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -3.76 Total: -15.17 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.39 Total: -55.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.01 -10.38 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891458373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.925 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds