Wall clock time and date at job start Tue Mar 31 2020 14:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99600 * 3 2 1 5 5 H 1.48500 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47263 * 119.99820 * 3 2 1 7 7 C 1.37875 * 119.99418 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00565 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47346 * 185.33857 * 9 7 2 11 11 C 1.46901 * 110.99980 * 197.64026 * 10 9 7 12 12 C 1.50701 * 109.46971 * 66.05146 * 11 10 9 13 13 C 1.35315 * 126.12782 * 94.97811 * 12 11 10 14 14 C 1.39868 * 107.91586 * 180.02562 * 13 12 11 15 15 N 1.30835 * 108.20558 * 359.97438 * 14 13 12 16 16 N 1.34951 * 126.12415 * 274.99529 * 12 11 10 17 17 C 1.46499 * 126.03454 * 0.02562 * 16 12 11 18 18 C 1.53792 * 113.60825 * 219.13202 * 17 16 12 19 19 C 1.53960 * 87.01840 * 220.04657 * 18 17 16 20 20 C 1.53779 * 113.61557 * 121.52857 * 17 16 12 21 21 C 1.46901 * 110.99680 * 73.68836 * 10 9 7 22 22 C 1.50701 * 109.47350 * 286.84060 * 21 10 9 23 23 C 1.38672 * 120.41759 * 276.77397 * 22 21 10 24 24 C 1.38625 * 118.41991 * 179.77838 * 23 22 21 25 25 C 1.38229 * 119.16132 * 0.51788 * 24 23 22 26 26 N 1.31856 * 120.76239 * 359.72420 * 25 24 23 27 27 C 1.31889 * 121.72559 * 359.97438 * 26 25 24 28 28 H 0.97004 * 119.99483 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46450 * 65.33870 * 9 7 2 30 30 H 1.08995 * 109.46714 * 305.34767 * 9 7 2 31 31 H 1.08999 * 109.47313 * 306.04522 * 11 10 9 32 32 H 1.09002 * 109.47155 * 186.04843 * 11 10 9 33 33 H 1.07994 * 126.03883 * 359.74786 * 13 12 11 34 34 H 1.08000 * 125.89493 * 179.97438 * 14 13 12 35 35 H 1.08994 * 112.85106 * 350.32554 * 17 16 12 36 36 H 1.08992 * 113.61464 * 334.56424 * 18 17 16 37 37 H 1.09003 * 113.61100 * 105.47207 * 18 17 16 38 38 H 1.08993 * 113.53577 * 270.81641 * 19 18 17 39 39 H 1.08995 * 113.74221 * 139.94307 * 19 18 17 40 40 H 1.08994 * 113.61623 * 254.52601 * 20 17 16 41 41 H 1.09002 * 113.61109 * 25.42580 * 20 17 16 42 42 H 1.09001 * 109.47237 * 46.84353 * 21 10 9 43 43 H 1.09008 * 109.47051 * 166.84414 * 21 10 9 44 44 H 1.08003 * 120.79259 * 0.02562 * 23 22 21 45 45 H 1.07996 * 120.42073 * 180.21774 * 24 23 22 46 46 H 1.07997 * 119.62462 * 179.74599 * 25 24 23 47 47 H 1.08002 * 119.61984 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2001 -3.6127 0.1300 11 6 1.5822 -4.8814 -0.2781 12 6 1.2774 -4.8400 -1.7534 13 6 2.0657 -5.3165 -2.7446 14 6 1.4173 -5.0801 -3.9612 15 7 0.2804 -4.4836 -3.7094 16 7 0.1694 -4.3207 -2.3226 17 6 -0.9511 -3.6962 -1.6150 18 6 -2.3259 -4.0433 -2.2105 19 6 -2.7164 -2.5757 -1.9577 20 6 -1.2173 -2.2434 -2.0433 21 6 2.7260 -3.6996 1.4989 22 6 3.6988 -2.5733 1.7358 23 6 5.0196 -2.6892 1.3295 24 6 5.8777 -1.6260 1.5640 25 6 5.3944 -0.4980 2.2003 26 7 4.1331 -0.4247 2.5774 27 6 3.2872 -1.4142 2.3654 28 1 -0.4849 0.8401 -0.0004 29 1 0.6982 -2.5996 -0.9337 30 1 0.5541 -2.5163 0.8385 31 1 0.6580 -5.0315 0.2799 32 1 2.2685 -5.7027 -0.0719 33 1 3.0276 -5.7910 -2.6189 34 1 1.7908 -5.3443 -4.9395 35 1 -0.8968 -3.8300 -0.5347 36 1 -2.2895 -4.3097 -3.2668 37 1 -2.8933 -4.7563 -1.6123 38 1 -3.1461 -2.4034 -0.9710 39 1 -3.3079 -2.1346 -2.7599 40 1 -0.8911 -1.5054 -1.3105 41 1 -0.8773 -2.0169 -3.0538 42 1 1.9031 -3.6245 2.2097 43 1 3.2356 -4.6539 1.6325 44 1 5.3704 -3.5848 0.8384 45 1 6.9120 -1.6803 1.2579 46 1 6.0574 0.3330 2.3904 47 1 2.2611 -1.3176 2.6882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891458373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:50 Heat of formation + Delta-G solvation = 140.792342 kcal Electronic energy + Delta-G solvation = -29127.883002 eV Core-core repulsion = 25506.165247 eV Total energy + Delta-G solvation = -3621.717755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28156 -40.93402 -39.22502 -38.22399 -34.67488 -33.76608 -32.67134 -32.14381 -31.19328 -29.34926 -27.37943 -26.63157 -26.15700 -25.35395 -24.18663 -23.58665 -22.29440 -21.87187 -20.64794 -19.81292 -18.57476 -17.99648 -17.70603 -17.19998 -16.62592 -16.53353 -16.25672 -16.04946 -15.41857 -15.38307 -15.22780 -14.57006 -14.38572 -14.30632 -14.03465 -13.88223 -13.80927 -13.62381 -13.51479 -13.11896 -13.08229 -12.91362 -12.88337 -12.56782 -12.37011 -12.03088 -11.99099 -11.80168 -11.61472 -11.45581 -11.20811 -11.13690 -10.49612 -10.37425 -10.11763 -10.03603 -9.47526 -9.27360 -9.01647 -8.09784 -6.06065 0.46806 0.68243 1.05784 1.36210 1.38049 1.52105 1.72444 2.06829 2.44840 3.06921 3.24499 3.49009 3.57204 3.68035 3.74341 3.81094 3.82230 4.00607 4.08772 4.14393 4.19973 4.24187 4.35297 4.42189 4.45682 4.61980 4.69654 4.70178 4.72600 4.82011 4.90155 4.94417 4.98717 5.01470 5.10967 5.14972 5.24301 5.38410 5.39662 5.43717 5.48214 5.57258 5.65236 5.87138 5.94552 6.08752 6.18529 6.27486 6.37839 6.63478 6.96328 6.98679 7.35235 7.55055 8.95960 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.005478 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.495299 B = 5110.417446 C = 6432.233710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 0.908 3.092 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.481 4.481 8 H 0.052 0.948 9 C 0.183 3.817 10 N -0.534 5.534 11 C 0.117 3.883 12 C 0.086 3.914 13 C -0.270 4.270 14 C 0.033 3.967 15 N -0.331 5.331 16 N -0.355 5.355 17 C 0.136 3.864 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.170 4.170 21 C 0.110 3.890 22 C -0.108 4.108 23 C -0.067 4.067 24 C -0.183 4.183 25 C 0.066 3.934 26 N -0.526 5.526 27 C 0.142 3.858 28 H 0.257 0.743 29 H 0.051 0.949 30 H -0.031 1.031 31 H 0.036 0.964 32 H 0.124 0.876 33 H 0.165 0.835 34 H 0.208 0.792 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.052 0.948 42 H 0.031 0.969 43 H 0.106 0.894 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.161 0.839 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -12.095 0.517 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.736 3.264 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.173 1.173 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.057 3.943 10 N -0.259 5.259 11 C -0.012 4.012 12 C -0.042 4.042 13 C -0.299 4.299 14 C -0.152 4.152 15 N -0.153 5.153 16 N -0.137 5.137 17 C 0.034 3.966 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.208 4.208 21 C -0.018 4.018 22 C -0.111 4.111 23 C -0.093 4.093 24 C -0.202 4.202 25 C -0.090 4.090 26 N -0.235 5.235 27 C -0.016 4.016 28 H 0.066 0.934 29 H 0.069 0.931 30 H -0.014 1.014 31 H 0.054 0.946 32 H 0.142 0.858 33 H 0.182 0.818 34 H 0.224 0.776 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.125 0.875 44 H 0.169 0.831 45 H 0.176 0.824 46 H 0.179 0.821 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.646 -10.569 0.219 10.898 hybrid contribution 0.512 0.545 0.205 0.775 sum 3.158 -10.025 0.423 10.519 Atomic orbital electron populations 1.69729 1.06132 1.26534 1.52609 1.25177 0.95202 1.00356 0.96039 0.86344 0.79276 0.81742 0.79007 1.22165 1.22181 1.17338 1.21267 0.93029 0.90553 1.47105 0.92955 1.20089 0.89997 0.88163 0.96043 1.62079 1.37807 1.02903 1.23084 1.20750 0.99006 0.94099 0.87362 1.21323 0.88705 0.97297 0.96905 1.21425 1.03623 1.14143 0.90750 1.24286 0.92330 0.97877 1.00700 1.77129 1.22632 1.23438 0.92114 1.48785 1.15982 1.44852 1.04118 1.22952 0.83954 0.94249 0.95462 1.23253 0.93287 0.97719 1.01965 1.22650 0.95339 0.95542 1.02716 1.23711 0.97473 0.97298 1.02342 1.20872 0.95542 0.96686 0.88660 1.20597 0.95441 0.96970 0.98079 1.21589 0.92271 0.99647 0.95818 1.22267 1.02177 0.94486 1.01285 1.22988 0.91913 0.98228 0.95862 1.67588 1.04759 1.29982 1.21200 1.22191 0.97120 0.88522 0.93742 0.93367 0.93149 1.01365 0.94557 0.85774 0.81767 0.77560 0.87139 0.89577 0.89190 0.89281 0.90206 0.86966 0.92889 0.95035 0.87548 0.83057 0.82412 0.82131 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.59 10.98 21.45 0.24 -49.35 16 2 C 0.03 1.67 5.46 84.65 0.46 2.13 16 3 Si 0.91 45.20 29.54 68.60 2.03 47.22 16 4 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 6 H -0.25 -12.30 7.00 99.48 0.70 -11.60 16 7 C -0.48 -24.71 6.07 25.60 0.16 -24.55 16 8 H 0.05 2.80 5.76 -2.91 -0.02 2.78 16 9 C 0.18 8.35 3.40 85.56 0.29 8.64 16 10 N -0.53 -19.48 4.47 -909.94 -4.07 -23.54 16 11 C 0.12 3.52 5.09 85.56 0.44 3.95 16 12 C 0.09 2.92 5.80 41.40 0.24 3.16 16 13 C -0.27 -8.20 10.72 21.99 0.24 -7.96 16 14 C 0.03 1.01 12.02 85.24 1.02 2.03 16 15 N -0.33 -12.20 12.02 -57.03 -0.69 -12.89 16 16 N -0.36 -13.10 3.32 -311.81 -1.04 -14.13 16 17 C 0.14 4.87 2.90 45.52 0.13 5.00 16 18 C -0.12 -3.67 7.78 31.19 0.24 -3.43 16 19 C -0.12 -3.89 8.09 31.18 0.25 -3.64 16 20 C -0.17 -6.87 6.80 31.12 0.21 -6.66 16 21 C 0.11 3.48 5.15 85.56 0.44 3.92 16 22 C -0.11 -3.79 3.51 -19.77 -0.07 -3.85 16 23 C -0.07 -2.01 9.85 22.47 0.22 -1.78 16 24 C -0.18 -5.21 10.11 22.36 0.23 -4.98 16 25 C 0.07 2.21 11.18 84.69 0.95 3.16 16 26 N -0.53 -21.45 10.25 -195.84 -2.01 -23.46 16 27 C 0.14 5.75 7.87 84.67 0.67 6.42 16 28 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.05 2.39 2.34 -2.38 -0.01 2.39 16 30 H -0.03 -1.57 7.81 -2.39 -0.02 -1.59 16 31 H 0.04 1.08 7.28 -2.39 -0.02 1.06 16 32 H 0.12 2.81 7.85 -2.39 -0.02 2.79 16 33 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 34 H 0.21 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.11 4.03 6.22 -2.39 -0.01 4.02 16 36 H 0.09 2.67 7.74 -2.39 -0.02 2.65 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.11 5.34 4.85 -2.39 -0.01 5.33 16 41 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.03 1.04 7.72 -2.39 -0.02 1.02 16 43 H 0.11 2.50 7.78 -2.38 -0.02 2.48 16 44 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 46 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 47 H 0.12 5.38 7.98 -2.91 -0.02 5.36 16 Total: -1.00 -65.53 368.10 1.54 -63.99 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.96 Total: 30.63 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 6.11 Total: -18.46 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -7.56 Total: -123.38 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.53 1.54 -63.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891458373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.780 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds