Wall clock time and date at job start Tue Mar 31 2020 14:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47337 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.47005 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.46933 * 150.00364 * 3 2 1 7 7 C 1.37883 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 354.66639 * 7 2 1 9 9 C 1.50699 * 120.00092 * 174.66759 * 7 2 1 10 10 N 1.46892 * 109.47002 * 183.83150 * 9 7 2 11 11 C 1.46898 * 111.00132 * 299.41957 * 10 9 7 12 12 C 1.50698 * 109.47071 * 288.83241 * 11 10 9 13 13 C 1.39861 * 126.04426 * 274.97589 * 12 11 10 14 14 N 1.30840 * 108.20732 * 179.81878 * 13 12 11 15 15 N 1.40093 * 108.19874 * 0.44007 * 14 13 12 16 16 C 1.46502 * 126.03450 * 179.73778 * 15 14 13 17 17 C 1.53774 * 113.61383 * 192.69812 * 16 15 14 18 18 C 1.53948 * 87.02076 * 220.05006 * 17 16 15 19 19 C 1.53779 * 87.11241 * 25.36365 * 18 17 16 20 20 C 1.34945 * 107.92691 * 359.71951 * 15 14 13 21 21 C 1.46908 * 110.99969 * 63.37193 * 10 9 7 22 22 C 1.50698 * 109.46705 * 66.04738 * 21 10 9 23 23 C 1.38230 * 119.62047 * 94.98279 * 22 21 10 24 24 C 1.38626 * 119.16337 * 180.02562 * 23 22 21 25 25 C 1.38672 * 118.41983 * 359.97438 * 24 23 22 26 26 C 1.38190 * 119.16331 * 0.02562 * 25 24 23 27 27 N 1.31860 * 119.61849 * 274.99738 * 22 21 10 28 28 H 0.97000 * 119.99672 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46765 * 63.83017 * 9 7 2 30 30 H 1.09000 * 109.46898 * 303.83412 * 9 7 2 31 31 H 1.09002 * 109.47219 * 48.83513 * 11 10 9 32 32 H 1.09003 * 109.47291 * 168.83663 * 11 10 9 33 33 H 1.08002 * 125.89544 * 0.02562 * 13 12 11 34 34 H 1.09000 * 112.85041 * 323.89550 * 16 15 14 35 35 H 1.09001 * 113.61499 * 334.57281 * 17 16 15 36 36 H 1.09010 * 113.61426 * 105.47236 * 17 16 15 37 37 H 1.09010 * 113.53781 * 270.81372 * 18 17 16 38 38 H 1.08998 * 113.74662 * 139.94536 * 18 17 16 39 39 H 1.08998 * 113.61475 * 220.09174 * 19 18 17 40 40 H 1.08996 * 113.61410 * 89.18678 * 19 18 17 41 41 H 1.07998 * 126.12847 * 180.02562 * 20 15 14 42 42 H 1.08996 * 109.47192 * 306.04580 * 21 10 9 43 43 H 1.09002 * 109.46877 * 186.04511 * 21 10 9 44 44 H 1.07998 * 120.41425 * 359.97438 * 23 22 21 45 45 H 1.07993 * 120.79108 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.41809 * 180.02562 * 25 24 23 47 47 H 1.07997 * 119.61652 * 180.28033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4681 -2.1274 0.0860 9 6 3.5067 -1.1969 -0.1218 10 7 3.9899 -2.5824 -0.1898 11 6 3.6253 -3.3272 1.0228 12 6 4.4506 -2.8332 2.1829 13 6 5.7358 -3.2678 2.5227 14 7 6.1237 -2.6071 3.5833 15 7 5.0918 -1.7370 3.9584 16 6 5.1115 -0.8178 5.0990 17 6 3.7335 -0.2241 5.4355 18 6 4.4598 1.1087 5.6927 19 6 5.5522 0.6092 4.7325 20 6 4.0767 -1.8949 3.0834 21 6 3.4860 -3.2572 -1.3935 22 6 4.0800 -2.6099 -2.6179 23 6 5.2175 -3.1470 -3.1909 24 6 5.7562 -2.5436 -4.3167 25 6 5.1275 -1.4177 -4.8268 26 6 3.9932 -0.9378 -4.2001 27 7 3.5088 -1.5375 -3.1302 28 1 -0.4850 0.8401 0.0004 29 1 3.9422 -0.7023 0.7464 30 1 3.7990 -0.6652 -1.0274 31 1 2.5677 -3.1751 1.2384 32 1 3.8154 -4.3892 0.8678 33 1 6.3103 -4.0168 1.9980 34 1 5.6334 -1.2275 5.9638 35 1 3.0520 -0.1930 4.5853 36 1 3.2789 -0.6540 6.3281 37 1 4.8026 1.2263 6.7208 38 1 3.9201 1.9810 5.3241 39 1 6.5638 0.8510 5.0584 40 1 5.3690 0.8685 3.6899 41 1 3.1348 -1.3667 3.0988 42 1 2.3998 -3.1738 -1.4291 43 1 3.7689 -4.3095 -1.3654 44 1 5.6812 -4.0251 -2.7664 45 1 6.6443 -2.9408 -4.7854 46 1 5.5193 -0.9223 -5.7028 47 1 3.4951 -0.0641 -4.5938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891938092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:22 Heat of formation + Delta-G solvation = 153.682149 kcal Electronic energy + Delta-G solvation = -27973.485422 eV Core-core repulsion = 24352.326611 eV Total energy + Delta-G solvation = -3621.158811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94140 -39.75498 -38.40240 -36.61832 -32.37429 -32.16018 -31.72578 -31.02164 -29.84208 -27.75560 -26.42656 -25.75956 -24.82453 -23.60592 -23.01761 -21.91024 -21.01012 -20.29850 -19.34336 -18.98388 -17.12588 -16.65890 -16.31986 -15.76926 -15.72162 -15.08943 -14.99607 -14.39342 -14.30030 -14.02921 -13.97222 -13.44753 -13.06776 -12.96370 -12.79908 -12.70893 -12.39217 -12.20689 -12.11561 -11.99859 -11.55478 -11.34093 -11.11022 -11.05608 -10.81969 -10.74957 -10.67100 -10.57811 -10.28233 -10.04295 -9.82597 -9.50280 -9.36865 -8.89682 -8.77361 -8.60667 -8.44984 -7.85655 -7.08504 -5.99844 -3.94420 1.52763 1.71206 2.37015 2.88085 3.31938 3.33969 3.39883 3.44361 4.24038 4.25598 4.42973 4.49610 4.67535 4.71291 4.81397 5.08360 5.14522 5.20022 5.34659 5.36053 5.40308 5.44691 5.53620 5.54124 5.55819 5.65681 5.77726 5.80518 5.82902 5.88992 5.94468 6.06118 6.11594 6.14767 6.23450 6.39212 6.43676 6.52153 6.54233 6.76236 6.86547 7.07235 7.12561 7.20890 7.31743 7.51866 7.69572 8.12008 8.17070 8.21012 8.54764 8.61762 9.02360 9.66245 11.13545 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004540 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.933843 B = 6165.760742 C = 7477.044595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.079 3.921 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.155 3.845 10 N -0.525 5.525 11 C 0.132 3.868 12 C -0.209 4.209 13 C 0.059 3.941 14 N -0.316 5.316 15 N -0.370 5.370 16 C 0.141 3.859 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.149 4.149 20 C 0.071 3.929 21 C 0.101 3.899 22 C 0.158 3.842 23 C -0.164 4.164 24 C -0.085 4.085 25 C -0.190 4.190 26 C 0.095 3.905 27 N -0.450 5.450 28 H 0.260 0.740 29 H 0.022 0.978 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.175 0.825 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.173 0.827 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.557 -3.378 2.906 11.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.123 4.123 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.028 3.972 10 N -0.248 5.248 11 C 0.004 3.996 12 C -0.220 4.220 13 C -0.127 4.127 14 N -0.136 5.136 15 N -0.153 5.153 16 C 0.039 3.961 17 C -0.186 4.186 18 C -0.176 4.176 19 C -0.188 4.188 20 C -0.074 4.074 21 C -0.027 4.027 22 C 0.020 3.980 23 C -0.184 4.184 24 C -0.111 4.111 25 C -0.210 4.210 26 C -0.062 4.062 27 N -0.158 5.158 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.192 0.808 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.190 0.810 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.108 -2.663 4.246 12.186 hybrid contribution -0.320 0.750 -1.170 1.426 sum 10.788 -1.913 3.076 11.380 Atomic orbital electron populations 1.69933 1.06188 1.26502 1.51459 1.24786 0.94380 0.98578 0.94510 0.86943 0.80248 0.84439 0.78702 1.20227 1.21770 1.19411 1.21499 0.90826 0.94299 1.49957 0.90894 1.20172 0.94529 0.85622 0.96851 1.62501 1.58379 1.04203 0.99743 1.20211 0.97203 0.95274 0.86950 1.19917 0.97109 1.04027 1.00989 1.23656 0.95216 0.99343 0.94516 1.77194 1.11690 1.07237 1.17520 1.48490 1.12021 1.31765 1.22984 1.22808 0.99026 0.87065 0.87218 1.23453 0.95771 0.96124 1.03225 1.22726 0.97620 0.97509 0.99774 1.23438 0.99599 0.94569 1.01163 1.22402 0.94707 0.99070 0.91247 1.20881 0.99632 0.95145 0.87056 1.21294 0.91120 0.90738 0.94893 1.21940 0.97386 1.02047 0.97044 1.21446 0.98935 0.95155 0.95578 1.22039 0.98457 0.98433 1.02060 1.22808 0.93293 0.98587 0.91560 1.67779 1.31447 1.07406 1.09196 0.93051 0.95973 0.94900 0.92224 0.92091 0.80768 0.86709 0.88324 0.90085 0.89642 0.90240 0.90638 0.89164 0.80988 0.91211 0.91185 0.85231 0.85648 0.85688 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 21.83 27.45 -169.99 -4.67 17.17 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.62 6.61 56.52 0.37 -6.25 16 7 C -0.53 -14.09 7.90 -34.44 -0.27 -14.36 16 8 H 0.07 2.10 6.18 -52.49 -0.32 1.78 16 9 C 0.16 3.70 3.79 -4.98 -0.02 3.69 16 10 N -0.52 -10.59 4.65 -238.97 -1.11 -11.70 16 11 C 0.13 2.44 5.28 -4.98 -0.03 2.41 16 12 C -0.21 -3.77 5.00 -105.06 -0.53 -4.30 16 13 C 0.06 0.99 11.96 -17.37 -0.21 0.78 16 14 N -0.32 -5.56 12.58 30.62 0.39 -5.17 16 15 N -0.37 -6.13 3.81 -54.08 -0.21 -6.34 16 16 C 0.14 1.83 5.03 -67.12 -0.34 1.50 16 17 C -0.15 -1.69 7.44 -25.83 -0.19 -1.88 16 18 C -0.14 -1.40 8.09 -25.83 -0.21 -1.61 16 19 C -0.15 -1.84 7.88 -25.92 -0.20 -2.04 16 20 C 0.07 1.28 9.70 -17.22 -0.17 1.12 16 21 C 0.10 1.91 5.10 -4.97 -0.03 1.88 16 22 C 0.16 2.94 5.70 -82.58 -0.47 2.46 16 23 C -0.16 -2.48 9.72 -39.44 -0.38 -2.86 16 24 C -0.09 -1.13 10.18 -39.28 -0.40 -1.53 16 25 C -0.19 -2.62 10.11 -39.44 -0.40 -3.02 16 26 C 0.10 1.62 11.18 -17.55 -0.20 1.42 16 27 N -0.45 -9.24 8.76 -9.47 -0.08 -9.33 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.56 5.88 -51.93 -0.31 0.26 16 30 H 0.03 0.85 5.55 -51.93 -0.29 0.56 16 31 H 0.06 1.23 6.15 -51.93 -0.32 0.92 16 32 H 0.06 0.96 7.83 -51.93 -0.41 0.56 16 33 H 0.18 2.43 8.06 -52.49 -0.42 2.00 16 34 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.31 6.31 -51.93 -0.33 0.98 16 36 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.17 3.14 6.69 -52.49 -0.35 2.79 16 42 H 0.07 1.52 6.60 -51.93 -0.34 1.18 16 43 H 0.07 1.08 7.77 -51.93 -0.40 0.68 16 44 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.15 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -32.84 377.97 -10.23 -43.06 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.88 Total: 7.07 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -4.13 Total: -14.22 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.24 Total: -58.78 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.84 -10.23 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891938092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.747 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds