Wall clock time and date at job start Tue Mar 31 2020 14:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47337 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.47005 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.46933 * 150.00364 * 3 2 1 7 7 C 1.37883 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99823 * 354.66639 * 7 2 1 9 9 C 1.50699 * 120.00092 * 174.66759 * 7 2 1 10 10 N 1.46892 * 109.47002 * 183.83150 * 9 7 2 11 11 C 1.46898 * 111.00132 * 299.41957 * 10 9 7 12 12 C 1.50698 * 109.47071 * 288.83241 * 11 10 9 13 13 C 1.39861 * 126.04426 * 274.97589 * 12 11 10 14 14 N 1.30840 * 108.20732 * 179.81878 * 13 12 11 15 15 N 1.40093 * 108.19874 * 0.44007 * 14 13 12 16 16 C 1.46502 * 126.03450 * 179.73778 * 15 14 13 17 17 C 1.53774 * 113.61383 * 192.69812 * 16 15 14 18 18 C 1.53948 * 87.02076 * 220.05006 * 17 16 15 19 19 C 1.53779 * 87.11241 * 25.36365 * 18 17 16 20 20 C 1.34945 * 107.92691 * 359.71951 * 15 14 13 21 21 C 1.46908 * 110.99969 * 63.37193 * 10 9 7 22 22 C 1.50698 * 109.46705 * 66.04738 * 21 10 9 23 23 C 1.38230 * 119.62047 * 94.98279 * 22 21 10 24 24 C 1.38626 * 119.16337 * 180.02562 * 23 22 21 25 25 C 1.38672 * 118.41983 * 359.97438 * 24 23 22 26 26 C 1.38190 * 119.16331 * 0.02562 * 25 24 23 27 27 N 1.31860 * 119.61849 * 274.99738 * 22 21 10 28 28 H 0.97000 * 119.99672 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46765 * 63.83017 * 9 7 2 30 30 H 1.09000 * 109.46898 * 303.83412 * 9 7 2 31 31 H 1.09002 * 109.47219 * 48.83513 * 11 10 9 32 32 H 1.09003 * 109.47291 * 168.83663 * 11 10 9 33 33 H 1.08002 * 125.89544 * 0.02562 * 13 12 11 34 34 H 1.09000 * 112.85041 * 323.89550 * 16 15 14 35 35 H 1.09001 * 113.61499 * 334.57281 * 17 16 15 36 36 H 1.09010 * 113.61426 * 105.47236 * 17 16 15 37 37 H 1.09010 * 113.53781 * 270.81372 * 18 17 16 38 38 H 1.08998 * 113.74662 * 139.94536 * 18 17 16 39 39 H 1.08998 * 113.61475 * 220.09174 * 19 18 17 40 40 H 1.08996 * 113.61410 * 89.18678 * 19 18 17 41 41 H 1.07998 * 126.12847 * 180.02562 * 20 15 14 42 42 H 1.08996 * 109.47192 * 306.04580 * 21 10 9 43 43 H 1.09002 * 109.46877 * 186.04511 * 21 10 9 44 44 H 1.07998 * 120.41425 * 359.97438 * 23 22 21 45 45 H 1.07993 * 120.79108 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.41809 * 180.02562 * 25 24 23 47 47 H 1.07997 * 119.61652 * 180.28033 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4681 -2.1274 0.0860 9 6 3.5067 -1.1969 -0.1218 10 7 3.9899 -2.5824 -0.1898 11 6 3.6253 -3.3272 1.0228 12 6 4.4506 -2.8332 2.1829 13 6 5.7358 -3.2678 2.5227 14 7 6.1237 -2.6071 3.5833 15 7 5.0918 -1.7370 3.9584 16 6 5.1115 -0.8178 5.0990 17 6 3.7335 -0.2241 5.4355 18 6 4.4598 1.1087 5.6927 19 6 5.5522 0.6092 4.7325 20 6 4.0767 -1.8949 3.0834 21 6 3.4860 -3.2572 -1.3935 22 6 4.0800 -2.6099 -2.6179 23 6 5.2175 -3.1470 -3.1909 24 6 5.7562 -2.5436 -4.3167 25 6 5.1275 -1.4177 -4.8268 26 6 3.9932 -0.9378 -4.2001 27 7 3.5088 -1.5375 -3.1302 28 1 -0.4850 0.8401 0.0004 29 1 3.9422 -0.7023 0.7464 30 1 3.7990 -0.6652 -1.0274 31 1 2.5677 -3.1751 1.2384 32 1 3.8154 -4.3892 0.8678 33 1 6.3103 -4.0168 1.9980 34 1 5.6334 -1.2275 5.9638 35 1 3.0520 -0.1930 4.5853 36 1 3.2789 -0.6540 6.3281 37 1 4.8026 1.2263 6.7208 38 1 3.9201 1.9810 5.3241 39 1 6.5638 0.8510 5.0584 40 1 5.3690 0.8685 3.6899 41 1 3.1348 -1.3667 3.0988 42 1 2.3998 -3.1738 -1.4291 43 1 3.7689 -4.3095 -1.3654 44 1 5.6812 -4.0251 -2.7664 45 1 6.6443 -2.9408 -4.7854 46 1 5.5193 -0.9223 -5.7028 47 1 3.4951 -0.0641 -4.5938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891938092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:21 Heat of formation + Delta-G solvation = 132.780413 kcal Electronic energy + Delta-G solvation = -27974.391789 eV Core-core repulsion = 24352.326611 eV Total energy + Delta-G solvation = -3622.065178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23279 -41.01046 -39.44999 -38.21593 -34.50269 -33.39950 -32.99031 -32.32112 -31.29344 -29.62517 -27.70942 -26.74544 -26.15915 -25.22515 -24.22025 -23.35435 -22.21499 -21.71731 -20.87538 -20.12787 -19.07333 -18.04934 -17.51042 -17.05746 -16.73960 -16.49821 -16.46816 -16.07194 -15.89483 -15.48401 -15.26123 -14.76898 -14.51018 -14.29467 -14.14712 -14.00242 -13.84543 -13.51045 -13.37472 -13.21936 -13.16199 -12.86782 -12.75629 -12.41092 -12.30673 -12.21523 -12.13216 -11.80592 -11.65293 -11.59854 -11.57694 -11.33774 -10.72233 -10.60820 -10.20173 -10.04942 -9.83946 -9.24178 -8.81401 -8.23018 -6.19207 0.32307 0.56921 1.01250 1.26794 1.30084 1.38761 1.67530 1.96415 2.35512 2.97669 3.14502 3.25505 3.48260 3.53369 3.72986 3.77441 3.80388 3.97795 4.00968 4.12564 4.13536 4.35752 4.40403 4.43290 4.50089 4.62212 4.63091 4.64268 4.72968 4.80463 4.87217 4.91480 4.93473 4.96664 4.97376 5.07510 5.10620 5.20229 5.25273 5.31308 5.37929 5.41782 5.43811 5.64024 5.87442 5.97142 6.18743 6.20745 6.42597 6.51981 6.82404 6.87107 7.36895 7.44147 8.93657 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004540 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.933843 B = 6165.760742 C = 7477.044595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.026 3.974 3 Si 0.925 3.075 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.507 4.507 8 H 0.041 0.959 9 C 0.176 3.824 10 N -0.516 5.516 11 C 0.137 3.863 12 C -0.224 4.224 13 C 0.063 3.937 14 N -0.328 5.328 15 N -0.368 5.368 16 C 0.129 3.871 17 C -0.148 4.148 18 C -0.122 4.122 19 C -0.151 4.151 20 C 0.059 3.941 21 C 0.105 3.895 22 C 0.124 3.876 23 C -0.158 4.158 24 C -0.078 4.078 25 C -0.174 4.174 26 C 0.067 3.933 27 N -0.508 5.508 28 H 0.260 0.740 29 H 0.010 0.990 30 H 0.020 0.980 31 H 0.026 0.974 32 H 0.094 0.906 33 H 0.205 0.795 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.159 0.841 42 H 0.026 0.974 43 H 0.108 0.892 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.047 -3.844 2.863 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.171 4.171 3 Si 0.752 3.248 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.048 3.952 10 N -0.239 5.239 11 C 0.009 3.991 12 C -0.236 4.236 13 C -0.123 4.123 14 N -0.149 5.149 15 N -0.150 5.150 16 C 0.028 3.972 17 C -0.187 4.187 18 C -0.160 4.160 19 C -0.190 4.190 20 C -0.088 4.088 21 C -0.023 4.023 22 C -0.014 4.014 23 C -0.178 4.178 24 C -0.104 4.104 25 C -0.194 4.194 26 C -0.090 4.090 27 N -0.218 5.218 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.222 0.778 34 H 0.155 0.845 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.176 0.824 42 H 0.044 0.956 43 H 0.126 0.874 44 H 0.176 0.824 45 H 0.188 0.812 46 H 0.180 0.820 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.617 -3.129 4.217 15.532 hybrid contribution -1.390 0.809 -1.209 2.012 sum 13.227 -2.321 3.008 13.762 Atomic orbital electron populations 1.70057 1.07684 1.27229 1.53734 1.25473 0.95003 1.01781 0.94845 0.86031 0.79345 0.80975 0.78464 1.20464 1.20886 1.18722 1.21628 0.92401 0.92828 1.47731 0.94078 1.19783 0.92007 0.88091 0.95286 1.62496 1.57680 1.02692 1.01061 1.20198 0.95404 0.96917 0.86581 1.19976 0.98016 1.04633 1.00977 1.24042 0.94568 0.99507 0.94191 1.77148 1.12145 1.07644 1.17956 1.48782 1.11168 1.31721 1.23308 1.23285 1.00308 0.86791 0.86862 1.23440 0.94925 0.97273 1.03042 1.22745 0.96011 0.96394 1.00856 1.23393 1.01315 0.94380 0.99920 1.22321 0.94851 0.99380 0.92233 1.20921 0.97094 0.97238 0.87075 1.21289 0.93140 0.91481 0.95442 1.22205 0.95842 1.02511 0.97225 1.21970 0.99655 0.94240 0.94503 1.22408 0.96600 0.98147 1.02240 1.23058 0.95087 0.99243 0.91648 1.67600 1.33710 1.09143 1.11342 0.93074 0.97222 0.96240 0.95534 0.88817 0.77840 0.84538 0.90957 0.88024 0.86429 0.90488 0.89017 0.92418 0.82411 0.95605 0.87421 0.82437 0.81235 0.81966 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.03 1.55 5.47 84.66 0.46 2.02 16 3 Si 0.93 46.78 27.45 68.60 1.88 48.66 16 4 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.26 -12.86 6.61 99.48 0.66 -12.20 16 7 C -0.51 -28.66 7.90 25.60 0.20 -28.46 16 8 H 0.04 2.55 6.18 -2.91 -0.02 2.54 16 9 C 0.18 8.71 3.79 85.56 0.32 9.04 16 10 N -0.52 -21.10 4.65 -909.95 -4.23 -25.34 16 11 C 0.14 5.14 5.28 85.56 0.45 5.59 16 12 C -0.22 -8.11 5.00 -20.15 -0.10 -8.21 16 13 C 0.06 2.01 11.96 85.23 1.02 3.03 16 14 N -0.33 -11.12 12.58 -57.03 -0.72 -11.84 16 15 N -0.37 -12.08 3.81 -325.00 -1.24 -13.31 16 16 C 0.13 3.20 5.03 45.52 0.23 3.43 16 17 C -0.15 -3.31 7.44 31.18 0.23 -3.08 16 18 C -0.12 -2.26 8.09 31.18 0.25 -2.01 16 19 C -0.15 -3.59 7.88 31.12 0.25 -3.34 16 20 C 0.06 2.19 9.70 83.54 0.81 3.00 16 21 C 0.10 4.01 5.10 85.55 0.44 4.45 16 22 C 0.12 4.59 5.70 42.55 0.24 4.83 16 23 C -0.16 -4.32 9.72 22.36 0.22 -4.10 16 24 C -0.08 -1.75 10.18 22.47 0.23 -1.53 16 25 C -0.17 -4.29 10.11 22.36 0.23 -4.07 16 26 C 0.07 2.25 11.18 84.67 0.95 3.20 16 27 N -0.51 -21.40 8.76 -183.88 -1.61 -23.01 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.01 0.51 5.88 -2.39 -0.01 0.49 16 30 H 0.02 1.04 5.55 -2.39 -0.01 1.02 16 31 H 0.03 1.17 6.15 -2.39 -0.01 1.15 16 32 H 0.09 2.85 7.83 -2.39 -0.02 2.83 16 33 H 0.20 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.07 2.01 6.31 -2.39 -0.02 2.00 16 36 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.12 1.46 8.14 -2.38 -0.02 1.45 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.16 6.21 6.69 -2.91 -0.02 6.20 16 42 H 0.03 1.20 6.60 -2.39 -0.02 1.19 16 43 H 0.11 3.19 7.77 -2.39 -0.02 3.17 16 44 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 47 H 0.15 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -76.28 377.97 1.73 -74.55 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.92 Total: 25.62 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 6.43 Total: -16.23 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -7.50 Total: -132.60 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.88 Total: 48.66 kcal Total: -76.28 1.73 -74.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891938092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.335 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds