Wall clock time and date at job start Tue Mar 31 2020 14:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38114 * 120.40312 * 2 1 4 4 C 1.39624 * 118.33448 * 179.97438 * 3 2 1 5 5 N 1.38546 * 120.52890 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.50698 * 109.46886 * 179.97438 * 6 5 4 8 8 C 1.38288 * 119.92407 * 89.99908 * 7 6 5 9 9 C 1.38111 * 120.07382 * 179.69843 * 8 7 6 10 10 C 1.38906 * 119.92343 * 0.28047 * 9 8 7 11 11 N 1.39676 * 120.07171 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.46500 * 120.00062 * 179.97438 * 11 10 9 14 14 C 1.50702 * 109.47458 * 89.99484 * 13 11 10 15 15 H 1.08007 * 119.99580 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00251 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99716 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00003 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47269 * 90.00417 * 18 16 14 20 20 H 1.48500 * 109.47420 * 210.00428 * 18 16 14 21 21 H 1.48506 * 109.47241 * 330.00419 * 18 16 14 22 22 C 1.38908 * 119.85606 * 359.97438 * 10 9 8 23 23 C 1.38112 * 119.92096 * 0.02562 * 22 10 9 24 24 N 1.32988 * 118.93651 * 0.25788 * 4 3 2 25 25 C 1.31752 * 120.68541 * 359.48476 * 24 4 3 26 26 C 1.50703 * 119.08182 * 180.26714 * 25 24 4 27 27 N 1.31784 * 121.83208 * 0.52664 * 25 24 4 28 28 H 1.08995 * 109.47604 * 89.99659 * 1 2 3 29 29 H 1.09002 * 109.47490 * 209.99650 * 1 2 3 30 30 H 1.09001 * 109.47282 * 329.99537 * 1 2 3 31 31 H 1.07998 * 120.83090 * 359.96429 * 3 2 1 32 32 H 0.97000 * 119.99418 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47536 * 59.99754 * 6 5 4 34 34 H 1.09003 * 109.47198 * 299.99243 * 6 5 4 35 35 H 1.08002 * 119.96530 * 359.97438 * 8 7 6 36 36 H 1.08000 * 120.03725 * 180.29787 * 9 8 7 37 37 H 1.09003 * 109.46748 * 90.00479 * 12 11 10 38 38 H 1.09000 * 109.47356 * 210.00064 * 12 11 10 39 39 H 1.09000 * 109.47257 * 330.00749 * 12 11 10 40 40 H 1.08994 * 109.47318 * 210.00032 * 13 11 10 41 41 H 1.09001 * 109.47009 * 329.99755 * 13 11 10 42 42 H 0.97001 * 119.99721 * 179.97438 * 17 16 14 43 43 H 1.07998 * 120.04186 * 180.02562 * 22 10 9 44 44 H 1.08002 * 119.96339 * 180.02562 * 23 22 10 45 45 H 1.08994 * 109.47135 * 270.25781 * 26 25 24 46 46 H 1.09000 * 109.46885 * 30.25463 * 26 25 24 47 47 H 1.09001 * 109.46858 * 150.25394 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1408 0.0005 5 7 4.3476 2.3080 0.0000 6 6 3.6734 3.6086 -0.0005 7 6 4.7037 4.7084 -0.0004 8 6 5.1758 5.2116 -1.1988 9 6 6.1154 6.2238 -1.2023 10 6 6.5904 6.7324 -0.0002 11 7 7.5411 7.7558 -0.0001 12 6 8.0387 8.2935 -1.2687 13 6 8.0406 8.2914 1.2687 14 6 9.2528 7.5080 1.7023 15 1 9.6152 6.6929 1.0933 16 6 9.8993 7.8318 2.8762 17 7 10.9575 7.1484 3.2542 18 14 9.2731 9.2420 3.9290 19 1 8.2820 8.7270 4.9077 20 1 10.4109 9.8605 4.6557 21 1 8.6285 10.2597 3.0607 22 6 6.1181 6.2211 1.2019 23 6 5.1784 5.2089 1.1982 24 7 4.2023 -0.0455 -0.0042 25 6 3.4954 -1.1574 0.0009 26 6 4.2139 -2.4821 0.0014 27 7 2.1777 -1.1433 0.0004 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6862 2.1379 -0.0006 32 1 5.3166 2.2640 0.0008 33 1 3.0500 3.6951 0.8894 34 1 3.0501 3.6944 -0.8906 35 1 4.8061 4.8157 -2.1331 36 1 6.4801 6.6197 -2.1386 37 1 7.4091 9.1264 -1.5821 38 1 9.0634 8.6415 -1.1389 39 1 8.0135 7.5129 -2.0291 40 1 8.3123 9.3389 1.1391 41 1 7.2638 8.2089 2.0289 42 1 11.4125 7.3764 4.0800 43 1 6.4850 6.6146 2.1383 44 1 4.8104 4.8111 2.1324 45 1 4.3875 -2.8016 -1.0261 46 1 5.1693 -2.3770 0.5155 47 1 3.6046 -3.2257 0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902168724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:30 Heat of formation + Delta-G solvation = 80.293439 kcal Electronic energy + Delta-G solvation = -26078.646979 eV Core-core repulsion = 22454.305795 eV Total energy + Delta-G solvation = -3624.341184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02443 -39.32905 -37.07261 -35.56784 -34.42315 -32.81319 -32.16920 -30.74069 -29.84433 -29.26539 -28.44952 -27.88850 -26.39024 -24.44976 -22.58450 -22.18265 -21.89620 -21.49930 -19.82065 -18.28368 -17.03093 -16.82249 -16.77317 -15.70797 -15.36332 -15.32845 -15.14339 -14.50804 -14.45985 -14.24936 -14.06294 -13.62759 -13.56158 -13.42855 -13.17939 -13.03189 -12.99770 -12.61567 -12.50731 -12.37969 -12.26006 -12.08774 -11.73572 -11.58127 -11.18971 -11.03541 -10.92501 -10.72897 -10.69063 -10.34842 -10.23472 -9.69418 -9.62248 -9.23671 -9.09566 -8.73702 -8.52985 -8.16969 -6.62818 -6.22031 -4.23027 0.99546 1.36288 1.81706 1.87119 3.10224 3.15532 3.23228 3.24338 3.79172 3.88254 3.94784 4.24022 4.25049 4.30803 4.71051 4.87515 5.04222 5.06037 5.08757 5.14298 5.29365 5.31881 5.34496 5.38439 5.40354 5.44225 5.46768 5.61537 5.63527 5.76835 5.79971 5.84018 5.87556 6.05342 6.13024 6.22268 6.28169 6.35271 6.57764 6.62154 6.72504 6.78995 6.87803 7.00530 7.25656 7.31106 7.43991 7.56659 7.88465 8.16092 8.29499 8.40717 8.84682 9.37064 10.90906 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.002280 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.854068 B =12280.290162 C =12873.827062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.201 3.799 3 C -0.304 4.304 4 C 0.444 3.556 5 N -0.702 5.702 6 C 0.182 3.818 7 C -0.202 4.202 8 C -0.049 4.049 9 C -0.220 4.220 10 C 0.251 3.749 11 N -0.606 5.606 12 C 0.096 3.904 13 C 0.219 3.781 14 C -0.538 4.538 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.892 5.892 18 Si 0.872 3.128 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.190 4.190 23 C -0.049 4.049 24 N -0.584 5.584 25 C 0.361 3.639 26 C -0.083 4.083 27 N -0.570 5.570 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.563 -9.395 -8.309 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.059 3.941 3 C -0.332 4.332 4 C 0.199 3.801 5 N -0.333 5.333 6 C 0.060 3.940 7 C -0.205 4.205 8 C -0.069 4.069 9 C -0.243 4.243 10 C 0.143 3.857 11 N -0.311 5.311 12 C -0.048 4.048 13 C 0.098 3.902 14 C -0.576 4.576 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.530 5.530 18 Si 0.699 3.301 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.212 4.212 23 C -0.069 4.069 24 N -0.310 5.310 25 C 0.092 3.908 26 C -0.142 4.142 27 N -0.291 5.291 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.247 0.753 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.149 0.851 44 H 0.132 0.868 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.893 -9.816 -8.160 21.979 hybrid contribution 0.047 1.659 0.668 1.789 sum -17.846 -8.157 -7.492 21.003 Atomic orbital electron populations 1.20726 0.88352 1.03681 1.03318 1.21323 0.96991 0.87744 0.88064 1.21906 0.93625 1.00678 1.17005 1.18604 0.88448 0.86683 0.86323 1.44991 1.09409 1.01806 1.77066 1.20140 0.93428 0.79184 1.01295 1.19166 1.05031 1.02566 0.93787 1.20575 0.95000 0.94721 0.96557 1.20577 1.04244 1.03077 0.96426 1.17997 0.87137 0.86970 0.93588 1.46820 1.41022 1.36316 1.06924 1.21543 0.99568 0.97742 0.85928 1.19707 0.94896 0.94488 0.81125 1.21437 1.10797 1.17750 1.07627 0.90546 1.24902 0.94637 0.96215 0.97231 1.69897 1.19494 1.40143 1.23469 0.86912 0.78989 0.83061 0.81141 1.19858 1.20863 1.19026 1.20845 1.01675 1.01065 0.97625 1.20704 0.94818 0.94641 0.96693 1.67790 1.41478 0.97478 1.24250 1.22860 0.86486 0.93581 0.87879 1.20535 0.99956 0.90047 1.03641 1.68086 1.09269 1.29940 1.21827 0.90002 0.90173 0.90414 0.84305 0.75257 0.91502 0.91580 0.87013 0.86436 0.94274 0.91043 0.92251 0.95259 0.95406 0.92399 0.85090 0.86773 0.89832 0.89760 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.21 36.00 0.37 -0.39 16 2 C 0.20 2.26 6.81 -82.33 -0.56 1.70 16 3 C -0.30 -3.46 9.08 -39.11 -0.35 -3.81 16 4 C 0.44 5.87 7.71 -154.78 -1.19 4.67 16 5 N -0.70 -8.65 5.70 -61.45 -0.35 -9.01 16 6 C 0.18 1.99 5.05 -5.20 -0.03 1.97 16 7 C -0.20 -2.71 5.25 -104.59 -0.55 -3.26 16 8 C -0.05 -0.67 9.69 -39.61 -0.38 -1.06 16 9 C -0.22 -3.44 9.21 -39.38 -0.36 -3.80 16 10 C 0.25 4.64 6.55 -83.79 -0.55 4.09 16 11 N -0.61 -11.95 2.99 -181.00 -0.54 -12.50 16 12 C 0.10 1.54 10.19 59.85 0.61 2.15 16 13 C 0.22 4.93 3.98 -5.19 -0.02 4.91 16 14 C -0.54 -14.49 9.94 -34.44 -0.34 -14.83 16 15 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 18 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 22 C -0.19 -3.48 9.21 -39.38 -0.36 -3.84 16 23 C -0.05 -0.75 9.69 -39.61 -0.38 -1.13 16 24 N -0.58 -8.31 10.37 -9.96 -0.10 -8.41 16 25 C 0.36 4.67 7.64 -157.24 -1.20 3.47 16 26 C -0.08 -0.77 10.32 36.01 0.37 -0.40 16 27 N -0.57 -7.30 10.27 -7.07 -0.07 -7.37 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.14 1.27 6.87 -52.49 -0.36 0.91 16 32 H 0.41 5.43 8.59 -40.82 -0.35 5.08 16 33 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 34 H 0.07 0.64 7.92 -51.93 -0.41 0.22 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.65 6.14 -52.49 -0.32 1.32 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.06 0.85 6.20 -51.93 -0.32 0.53 16 40 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 41 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.13 2.62 6.14 -52.49 -0.32 2.30 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -31.42 387.53 -11.14 -42.56 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.97 Total: 6.67 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -5.04 Total: -7.63 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.29 Total: -62.96 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.42 -11.14 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902168724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.851 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds