Wall clock time and date at job start Tue Mar 31 2020 14:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38114 * 120.40312 * 2 1 4 4 C 1.39624 * 118.33448 * 179.97438 * 3 2 1 5 5 N 1.38546 * 120.52890 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.50698 * 109.46886 * 179.97438 * 6 5 4 8 8 C 1.38288 * 119.92407 * 89.99908 * 7 6 5 9 9 C 1.38111 * 120.07382 * 179.69843 * 8 7 6 10 10 C 1.38906 * 119.92343 * 0.28047 * 9 8 7 11 11 N 1.39676 * 120.07171 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.46500 * 120.00062 * 179.97438 * 11 10 9 14 14 C 1.50702 * 109.47458 * 89.99484 * 13 11 10 15 15 H 1.08007 * 119.99580 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00251 * 180.02562 * 14 13 11 17 17 N 1.31515 * 119.99716 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00003 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47269 * 90.00417 * 18 16 14 20 20 H 1.48500 * 109.47420 * 210.00428 * 18 16 14 21 21 H 1.48506 * 109.47241 * 330.00419 * 18 16 14 22 22 C 1.38908 * 119.85606 * 359.97438 * 10 9 8 23 23 C 1.38112 * 119.92096 * 0.02562 * 22 10 9 24 24 N 1.32988 * 118.93651 * 0.25788 * 4 3 2 25 25 C 1.31752 * 120.68541 * 359.48476 * 24 4 3 26 26 C 1.50703 * 119.08182 * 180.26714 * 25 24 4 27 27 N 1.31784 * 121.83208 * 0.52664 * 25 24 4 28 28 H 1.08995 * 109.47604 * 89.99659 * 1 2 3 29 29 H 1.09002 * 109.47490 * 209.99650 * 1 2 3 30 30 H 1.09001 * 109.47282 * 329.99537 * 1 2 3 31 31 H 1.07998 * 120.83090 * 359.96429 * 3 2 1 32 32 H 0.97000 * 119.99418 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47536 * 59.99754 * 6 5 4 34 34 H 1.09003 * 109.47198 * 299.99243 * 6 5 4 35 35 H 1.08002 * 119.96530 * 359.97438 * 8 7 6 36 36 H 1.08000 * 120.03725 * 180.29787 * 9 8 7 37 37 H 1.09003 * 109.46748 * 90.00479 * 12 11 10 38 38 H 1.09000 * 109.47356 * 210.00064 * 12 11 10 39 39 H 1.09000 * 109.47257 * 330.00749 * 12 11 10 40 40 H 1.08994 * 109.47318 * 210.00032 * 13 11 10 41 41 H 1.09001 * 109.47009 * 329.99755 * 13 11 10 42 42 H 0.97001 * 119.99721 * 179.97438 * 17 16 14 43 43 H 1.07998 * 120.04186 * 180.02562 * 22 10 9 44 44 H 1.08002 * 119.96339 * 180.02562 * 23 22 10 45 45 H 1.08994 * 109.47135 * 270.25781 * 26 25 24 46 46 H 1.09000 * 109.46885 * 30.25463 * 26 25 24 47 47 H 1.09001 * 109.46858 * 150.25394 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1408 0.0005 5 7 4.3476 2.3080 0.0000 6 6 3.6734 3.6086 -0.0005 7 6 4.7037 4.7084 -0.0004 8 6 5.1758 5.2116 -1.1988 9 6 6.1154 6.2238 -1.2023 10 6 6.5904 6.7324 -0.0002 11 7 7.5411 7.7558 -0.0001 12 6 8.0387 8.2935 -1.2687 13 6 8.0406 8.2914 1.2687 14 6 9.2528 7.5080 1.7023 15 1 9.6152 6.6929 1.0933 16 6 9.8993 7.8318 2.8762 17 7 10.9575 7.1484 3.2542 18 14 9.2731 9.2420 3.9290 19 1 8.2820 8.7270 4.9077 20 1 10.4109 9.8605 4.6557 21 1 8.6285 10.2597 3.0607 22 6 6.1181 6.2211 1.2019 23 6 5.1784 5.2089 1.1982 24 7 4.2023 -0.0455 -0.0042 25 6 3.4954 -1.1574 0.0009 26 6 4.2139 -2.4821 0.0014 27 7 2.1777 -1.1433 0.0004 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6862 2.1379 -0.0006 32 1 5.3166 2.2640 0.0008 33 1 3.0500 3.6951 0.8894 34 1 3.0501 3.6944 -0.8906 35 1 4.8061 4.8157 -2.1331 36 1 6.4801 6.6197 -2.1386 37 1 7.4091 9.1264 -1.5821 38 1 9.0634 8.6415 -1.1389 39 1 8.0135 7.5129 -2.0291 40 1 8.3123 9.3389 1.1391 41 1 7.2638 8.2089 2.0289 42 1 11.4125 7.3764 4.0800 43 1 6.4850 6.6146 2.1383 44 1 4.8104 4.8111 2.1324 45 1 4.3875 -2.8016 -1.0261 46 1 5.1693 -2.3770 0.5155 47 1 3.6046 -3.2257 0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902168724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:30 Heat of formation + Delta-G solvation = 62.307117 kcal Electronic energy + Delta-G solvation = -26079.426925 eV Core-core repulsion = 22454.305795 eV Total energy + Delta-G solvation = -3625.121130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90871 -40.57796 -38.20349 -36.78708 -35.25070 -34.75896 -33.22852 -32.05931 -31.06372 -30.08886 -29.95703 -28.66407 -27.57362 -25.90392 -23.97822 -23.07293 -22.99384 -22.68405 -21.13504 -19.24385 -19.10776 -18.15317 -17.65562 -16.98591 -16.45523 -16.28053 -16.18918 -16.09683 -15.58527 -15.35449 -15.14127 -14.92820 -14.66606 -14.50316 -14.39456 -14.16227 -14.05377 -13.78542 -13.41558 -13.31453 -13.24235 -13.16955 -13.04723 -12.98629 -12.68827 -12.44834 -12.22874 -12.04843 -11.83945 -11.76335 -11.59426 -11.50492 -10.85140 -10.55575 -10.48165 -10.14118 -9.76150 -9.07184 -8.35992 -8.02841 -6.41751 0.12895 0.45425 0.61043 0.63301 1.32862 1.33486 1.44029 2.13767 2.28214 2.48072 2.90490 2.98117 3.07995 3.18685 3.42539 3.84527 3.89351 3.97167 4.14942 4.28316 4.34190 4.39516 4.42424 4.53822 4.56644 4.61865 4.65933 4.73667 4.75086 4.75764 4.77201 4.82021 4.87306 4.96044 4.98786 5.00658 5.03038 5.21840 5.22056 5.42311 5.46768 5.52130 5.54515 5.79120 5.85417 6.03263 6.13427 6.34110 6.54816 6.60066 6.65721 6.79360 7.23790 7.38966 8.81443 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.002280 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.854068 B =12280.290162 C =12873.827062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.190 3.810 3 C -0.304 4.304 4 C 0.426 3.574 5 N -0.704 5.704 6 C 0.187 3.813 7 C -0.185 4.185 8 C -0.044 4.044 9 C -0.218 4.218 10 C 0.221 3.779 11 N -0.625 5.625 12 C 0.095 3.905 13 C 0.230 3.770 14 C -0.536 4.536 15 H 0.024 0.976 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.946 3.054 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.242 1.242 22 C -0.219 4.219 23 C -0.051 4.051 24 N -0.612 5.612 25 C 0.343 3.657 26 C -0.080 4.080 27 N -0.584 5.584 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.403 0.597 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.268 0.732 43 H 0.103 0.897 44 H 0.127 0.873 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.936 -9.018 -9.371 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.048 3.952 3 C -0.332 4.332 4 C 0.183 3.817 5 N -0.335 5.335 6 C 0.065 3.935 7 C -0.188 4.188 8 C -0.063 4.063 9 C -0.241 4.241 10 C 0.115 3.885 11 N -0.332 5.332 12 C -0.048 4.048 13 C 0.107 3.893 14 C -0.575 4.575 15 H 0.042 0.958 16 C -0.187 4.187 17 N -0.586 5.586 18 Si 0.769 3.231 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.165 1.165 22 C -0.242 4.242 23 C -0.070 4.070 24 N -0.339 5.339 25 C 0.075 3.925 26 C -0.139 4.139 27 N -0.306 5.306 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.182 0.818 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.145 0.855 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.317 -9.453 -9.261 25.090 hybrid contribution 1.030 1.344 0.909 1.922 sum -20.287 -8.108 -8.351 23.389 Atomic orbital electron populations 1.20828 0.85581 1.04753 1.04496 1.22012 0.98843 0.87374 0.86980 1.22164 0.92830 1.01856 1.16372 1.18880 0.89401 0.86573 0.86894 1.44963 1.09032 1.02086 1.77398 1.20217 0.92599 0.77542 1.03168 1.19416 1.04271 1.02167 0.92914 1.20959 0.93808 0.93558 0.97980 1.20831 1.04178 1.03122 0.95955 1.18293 0.87873 0.87586 0.94731 1.46770 1.42165 1.37564 1.06726 1.21675 0.99122 0.99028 0.84979 1.19369 0.92910 0.93970 0.83005 1.21644 1.12278 1.16605 1.06978 0.95753 1.25885 0.94671 0.99355 0.98793 1.70069 1.21472 1.42648 1.24409 0.85734 0.78510 0.79622 0.79248 1.19010 1.20680 1.16493 1.20816 1.03638 1.02979 0.96755 1.20880 0.94084 0.93777 0.98306 1.67800 1.42436 0.98294 1.25397 1.23464 0.86998 0.94360 0.87711 1.20614 0.99827 0.88890 1.04541 1.68180 1.09255 1.30880 1.22330 0.88580 0.90109 0.88347 0.81840 0.76123 0.90152 0.89174 0.83788 0.84737 0.91718 0.92563 0.90664 0.94506 0.95076 0.92314 0.87929 0.85519 0.88659 0.89745 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.21 71.23 0.73 -0.43 16 2 C 0.19 3.86 6.81 42.42 0.29 4.14 16 3 C -0.30 -6.14 9.08 22.58 0.20 -5.93 16 4 C 0.43 10.59 7.71 133.16 1.03 11.62 16 5 N -0.70 -16.00 5.70 -348.33 -1.99 -17.99 16 6 C 0.19 3.45 5.05 85.63 0.43 3.89 16 7 C -0.18 -4.49 5.25 -19.84 -0.10 -4.59 16 8 C -0.04 -1.07 9.69 22.25 0.22 -0.85 16 9 C -0.22 -6.43 9.21 22.40 0.21 -6.22 16 10 C 0.22 8.16 6.55 38.21 0.25 8.41 16 11 N -0.63 -24.92 2.99 -726.57 -2.17 -27.09 16 12 C 0.09 2.99 10.19 127.77 1.30 4.29 16 13 C 0.23 10.54 3.98 85.63 0.34 10.88 16 14 C -0.54 -30.27 9.94 25.60 0.25 -30.02 16 15 H 0.02 1.58 8.06 -2.91 -0.02 1.55 16 16 C 0.01 0.63 5.47 84.65 0.46 1.09 16 17 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 18 Si 0.95 42.22 27.47 68.60 1.88 44.11 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 22 C -0.22 -8.21 9.21 22.40 0.21 -8.00 16 23 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 24 N -0.61 -17.05 10.37 -185.44 -1.92 -18.98 16 25 C 0.34 8.64 7.64 138.77 1.06 9.70 16 26 C -0.08 -1.42 10.32 71.24 0.73 -0.69 16 27 N -0.58 -14.22 10.27 -176.29 -1.81 -16.03 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.10 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.16 2.32 6.87 -2.91 -0.02 2.30 16 32 H 0.40 10.26 8.59 -92.71 -0.80 9.47 16 33 H 0.08 1.32 7.92 -2.39 -0.02 1.30 16 34 H 0.09 1.30 7.92 -2.39 -0.02 1.28 16 35 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.13 3.43 6.14 -2.91 -0.02 3.41 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 39 H 0.07 2.07 6.20 -2.39 -0.01 2.06 16 40 H 0.04 1.62 7.13 -2.39 -0.02 1.61 16 41 H 0.03 1.41 5.62 -2.39 -0.01 1.40 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.10 4.33 6.14 -2.91 -0.02 4.31 16 44 H 0.13 3.35 8.06 -2.91 -0.02 3.32 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.45 387.53 2.25 -70.20 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.13 Total: 28.08 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 7.83 Total: -4.02 kcal Atomic # 7 Polarization: -130.77 SS G_CDS: -7.59 Total: -138.37 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.11 kcal Total: -72.45 2.25 -70.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902168724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.508 kcal (2) G-P(sol) polarization free energy of solvation -72.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds