Wall clock time and date at job start Tue Mar 31 2020 15:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31783 * 119.03370 * 269.72997 * 3 2 1 5 5 C 1.32267 * 120.89856 * 179.71654 * 4 3 2 6 6 C 1.39272 * 119.00627 * 0.54636 * 5 4 3 7 7 N 1.39735 * 120.87741 * 179.71311 * 6 5 4 8 8 C 1.46504 * 119.99924 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47392 * 180.02562 * 8 7 6 10 10 C 1.38289 * 119.92360 * 269.73094 * 9 8 7 11 11 C 1.38107 * 120.07063 * 179.72241 * 10 9 8 12 12 C 1.38909 * 119.92562 * 0.54719 * 11 10 9 13 13 N 1.39676 * 120.07557 * 179.74596 * 12 11 10 14 14 C 1.46497 * 120.00097 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99768 * 359.97438 * 13 12 11 16 16 C 1.50699 * 109.47205 * 89.99880 * 15 13 12 17 17 H 1.08002 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00180 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00380 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00164 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47226 * 89.99853 * 20 18 16 22 22 H 1.48496 * 109.47175 * 209.99970 * 20 18 16 23 23 H 1.48497 * 109.46728 * 329.99679 * 20 18 16 24 24 C 1.38908 * 119.85039 * 359.72522 * 12 11 10 25 25 C 1.38105 * 119.92665 * 0.02562 * 24 12 11 26 26 C 1.39271 * 118.25185 * 359.72863 * 6 5 4 27 27 N 1.31793 * 119.02933 * 90.00065 * 3 2 1 28 28 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 32 32 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 33 33 H 1.07996 * 120.49824 * 180.28208 * 5 4 3 34 34 H 0.96997 * 120.00437 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47209 * 300.00519 * 8 7 6 36 36 H 1.08999 * 109.46525 * 60.00462 * 8 7 6 37 37 H 1.07997 * 119.96313 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.03659 * 180.26835 * 11 10 9 39 39 H 1.09003 * 109.47165 * 90.00347 * 14 13 12 40 40 H 1.09001 * 109.47249 * 209.99959 * 14 13 12 41 41 H 1.08997 * 109.47101 * 330.00319 * 14 13 12 42 42 H 1.08999 * 109.47003 * 210.00018 * 15 13 12 43 43 H 1.08992 * 109.47492 * 329.99966 * 15 13 12 44 44 H 0.96996 * 120.00798 * 179.97438 * 19 18 16 45 45 H 1.08009 * 120.03755 * 179.97438 * 24 12 11 46 46 H 1.08000 * 119.96169 * 179.97438 * 25 24 12 47 47 H 1.07998 * 120.49869 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2507 2.0221 -1.1522 5 6 2.6862 3.2702 -1.1953 6 6 2.9244 3.9440 0.0001 7 7 3.3906 5.2613 0.0002 8 6 3.6346 5.9521 -1.2685 9 6 4.1296 7.3485 -0.9931 10 6 3.2268 8.3890 -0.8719 11 6 3.6766 9.6690 -0.6139 12 6 5.0383 9.9127 -0.4873 13 7 5.4970 11.2069 -0.2316 14 6 6.9334 11.4619 -0.0979 15 6 4.5417 12.3094 -0.0971 16 6 4.1276 12.4421 1.3458 17 1 4.5356 11.7725 2.0884 18 6 3.2287 13.4190 1.7180 19 7 2.7323 14.2348 0.8138 20 14 2.7160 13.5840 3.5067 21 1 3.6384 14.5171 4.2021 22 1 1.3303 14.1132 3.5776 23 1 2.7715 12.2527 4.1622 24 6 5.9427 8.8661 -0.6152 25 6 5.4858 7.5876 -0.8682 26 6 2.6862 3.2702 1.1954 27 7 2.2455 2.0238 1.1524 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 2.8586 3.7581 -2.1432 34 1 3.5526 5.7184 0.8402 35 1 4.3856 5.4070 -1.8404 36 1 2.7076 6.0008 -1.8397 37 1 2.1685 8.1997 -0.9752 38 1 2.9708 10.4805 -0.5151 39 1 7.3523 11.7026 -1.0750 40 1 7.0921 12.2992 0.5817 41 1 7.4247 10.5736 0.2991 42 1 5.0086 13.2371 -0.4279 43 1 3.6636 12.1061 -0.7098 44 1 2.0996 14.9219 1.0755 45 1 7.0022 9.0522 -0.5178 46 1 6.1885 6.7736 -0.9681 47 1 2.8590 3.7579 2.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902204454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:01 Heat of formation + Delta-G solvation = 74.253902 kcal Electronic energy + Delta-G solvation = -25869.571938 eV Core-core repulsion = 22244.968860 eV Total energy + Delta-G solvation = -3624.603078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10347 -39.27432 -37.06939 -35.57062 -33.76359 -33.61641 -32.80325 -30.89253 -30.64577 -28.63385 -27.93303 -26.37418 -24.96364 -24.56219 -23.73653 -22.39568 -21.75196 -21.61902 -19.86027 -18.10714 -17.29163 -16.75122 -16.55183 -16.50716 -15.56798 -15.18342 -15.08638 -14.66472 -14.42764 -14.11226 -14.00829 -13.87935 -13.73203 -13.58608 -13.23889 -13.08417 -12.82973 -12.44533 -12.23946 -12.10494 -11.96084 -11.55170 -11.36992 -11.28686 -11.26015 -11.06282 -10.92780 -10.87066 -10.81722 -10.67239 -10.37141 -10.04074 -9.90607 -9.26070 -9.03723 -8.60677 -8.49476 -7.74221 -6.65915 -6.14215 -4.27991 1.01932 1.06888 1.87582 1.90680 3.19226 3.26707 3.28924 3.30974 3.72738 3.97581 3.99308 4.16739 4.30747 4.36239 4.44468 4.75269 4.90978 5.01748 5.03950 5.09443 5.12188 5.16179 5.36626 5.40636 5.44543 5.53330 5.60546 5.66909 5.67339 5.84360 5.89985 5.93713 5.98117 6.10491 6.19962 6.25429 6.27589 6.43114 6.71203 6.78040 6.83362 6.98638 7.06446 7.07331 7.20832 7.38330 7.45493 7.70228 8.02775 8.10122 8.13063 8.30022 8.80309 9.39331 10.85777 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002186 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.688457 B =12805.476438 C =13893.100953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C 0.240 3.760 4 N -0.475 5.475 5 C 0.067 3.933 6 C 0.121 3.879 7 N -0.721 5.721 8 C 0.178 3.822 9 C -0.204 4.204 10 C -0.051 4.051 11 C -0.190 4.190 12 C 0.251 3.749 13 N -0.610 5.610 14 C 0.096 3.904 15 C 0.247 3.753 16 C -0.534 4.534 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.225 4.225 25 C -0.051 4.051 26 C 0.071 3.929 27 N -0.476 5.476 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.406 0.594 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.265 0.735 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -20.164 -3.942 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.029 4.029 4 N -0.188 5.188 5 C -0.105 4.105 6 C 0.010 3.990 7 N -0.349 5.349 8 C 0.055 3.945 9 C -0.207 4.207 10 C -0.071 4.071 11 C -0.212 4.212 12 C 0.142 3.858 13 N -0.314 5.314 14 C -0.048 4.048 15 C 0.127 3.873 16 C -0.573 4.573 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.248 4.248 25 C -0.070 4.070 26 C -0.102 4.102 27 N -0.188 5.188 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.180 0.820 34 H 0.243 0.757 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.503 -20.587 -4.129 21.051 hybrid contribution 0.148 1.624 1.397 2.147 sum 1.651 -18.963 -2.732 19.230 Atomic orbital electron populations 1.21699 0.94257 1.01963 1.02264 1.20140 0.96263 0.88505 1.03438 1.22719 0.98897 0.97873 0.83369 1.67987 1.10795 1.09388 1.30616 1.22724 1.00055 0.90726 0.97034 1.19751 0.95132 0.87554 0.96600 1.45047 1.70697 1.09643 1.09550 1.20113 0.99619 0.89863 0.84932 1.19147 0.93676 0.93626 1.14291 1.20704 0.98351 0.91952 0.96080 1.20913 0.94477 0.97697 1.08125 1.18034 0.92758 0.85137 0.89890 1.47205 1.06073 1.05787 1.72382 1.21521 0.81891 1.01290 1.00129 1.19339 0.87615 0.83388 0.96936 1.21535 1.25888 1.16159 0.93702 0.92246 1.24966 0.95838 0.95396 0.97842 1.69918 1.30773 1.19111 1.33393 0.86511 0.77931 0.78442 0.84690 1.20565 1.21017 1.19801 1.20582 0.98706 0.92531 1.12949 1.20554 0.94303 0.95662 0.96527 1.22730 0.99738 0.90829 0.96950 1.67991 1.10873 1.09297 1.30635 0.92504 0.91917 0.92500 0.89846 0.89863 0.81971 0.75743 0.91914 0.91800 0.86910 0.84794 0.94348 0.91242 0.92565 0.95028 0.94512 0.92535 0.86623 0.87190 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.04 -0.40 6.37 -27.88 -0.18 -0.58 16 3 C 0.24 2.90 6.89 -157.20 -1.08 1.81 16 4 N -0.48 -5.89 10.32 -10.57 -0.11 -6.00 16 5 C 0.07 0.75 10.59 -16.98 -0.18 0.57 16 6 C 0.12 1.30 6.70 -83.49 -0.56 0.74 16 7 N -0.72 -7.25 5.74 -59.59 -0.34 -7.59 16 8 C 0.18 1.80 5.08 -5.19 -0.03 1.78 16 9 C -0.20 -2.64 5.25 -104.59 -0.55 -3.18 16 10 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 11 C -0.19 -3.48 9.21 -39.38 -0.36 -3.85 16 12 C 0.25 4.63 6.55 -83.79 -0.55 4.09 16 13 N -0.61 -12.20 2.99 -181.01 -0.54 -12.74 16 14 C 0.10 1.56 10.19 59.85 0.61 2.17 16 15 C 0.25 5.89 4.91 -5.19 -0.03 5.86 16 16 C -0.53 -13.98 9.39 -34.44 -0.32 -14.30 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 20 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 C -0.22 -3.48 9.21 -39.38 -0.36 -3.85 16 25 C -0.05 -0.68 9.69 -39.61 -0.38 -1.07 16 26 C 0.07 0.78 11.20 -16.98 -0.19 0.59 16 27 N -0.48 -5.92 10.32 -10.57 -0.11 -6.02 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.16 1.48 6.91 -52.49 -0.36 1.12 16 34 H 0.41 4.04 8.50 -40.82 -0.35 3.69 16 35 H 0.06 0.58 7.94 -51.93 -0.41 0.16 16 36 H 0.06 0.62 7.94 -51.93 -0.41 0.20 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.77 6.14 -52.49 -0.32 2.45 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.16 8.07 -51.93 -0.42 0.75 16 41 H 0.06 0.80 6.20 -51.93 -0.32 0.48 16 42 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 0.93 6.20 -51.93 -0.32 0.60 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.12 1.62 6.14 -52.48 -0.32 1.30 16 46 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -29.03 391.06 -10.78 -39.82 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.01 Total: 4.69 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.28 Total: -9.60 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.37 Total: -56.46 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.03 -10.78 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902204454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.069 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds