Wall clock time and date at job start Tue Mar 31 2020 15:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 N 1.31783 * 119.03370 * 269.72997 * 3 2 1 5 5 C 1.32267 * 120.89856 * 179.71654 * 4 3 2 6 6 C 1.39272 * 119.00627 * 0.54636 * 5 4 3 7 7 N 1.39735 * 120.87741 * 179.71311 * 6 5 4 8 8 C 1.46504 * 119.99924 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47392 * 180.02562 * 8 7 6 10 10 C 1.38289 * 119.92360 * 269.73094 * 9 8 7 11 11 C 1.38107 * 120.07063 * 179.72241 * 10 9 8 12 12 C 1.38909 * 119.92562 * 0.54719 * 11 10 9 13 13 N 1.39676 * 120.07557 * 179.74596 * 12 11 10 14 14 C 1.46497 * 120.00097 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99768 * 359.97438 * 13 12 11 16 16 C 1.50699 * 109.47205 * 89.99880 * 15 13 12 17 17 H 1.08002 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00180 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00380 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00164 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47226 * 89.99853 * 20 18 16 22 22 H 1.48496 * 109.47175 * 209.99970 * 20 18 16 23 23 H 1.48497 * 109.46728 * 329.99679 * 20 18 16 24 24 C 1.38908 * 119.85039 * 359.72522 * 12 11 10 25 25 C 1.38105 * 119.92665 * 0.02562 * 24 12 11 26 26 C 1.39271 * 118.25185 * 359.72863 * 6 5 4 27 27 N 1.31793 * 119.02933 * 90.00065 * 3 2 1 28 28 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 29 29 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 32 32 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 33 33 H 1.07996 * 120.49824 * 180.28208 * 5 4 3 34 34 H 0.96997 * 120.00437 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47209 * 300.00519 * 8 7 6 36 36 H 1.08999 * 109.46525 * 60.00462 * 8 7 6 37 37 H 1.07997 * 119.96313 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.03659 * 180.26835 * 11 10 9 39 39 H 1.09003 * 109.47165 * 90.00347 * 14 13 12 40 40 H 1.09001 * 109.47249 * 209.99959 * 14 13 12 41 41 H 1.08997 * 109.47101 * 330.00319 * 14 13 12 42 42 H 1.08999 * 109.47003 * 210.00018 * 15 13 12 43 43 H 1.08992 * 109.47492 * 329.99966 * 15 13 12 44 44 H 0.96996 * 120.00798 * 179.97438 * 19 18 16 45 45 H 1.08009 * 120.03755 * 179.97438 * 24 12 11 46 46 H 1.08000 * 119.96169 * 179.97438 * 25 24 12 47 47 H 1.07998 * 120.49869 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2507 2.0221 -1.1522 5 6 2.6862 3.2702 -1.1953 6 6 2.9244 3.9440 0.0001 7 7 3.3906 5.2613 0.0002 8 6 3.6346 5.9521 -1.2685 9 6 4.1296 7.3485 -0.9931 10 6 3.2268 8.3890 -0.8719 11 6 3.6766 9.6690 -0.6139 12 6 5.0383 9.9127 -0.4873 13 7 5.4970 11.2069 -0.2316 14 6 6.9334 11.4619 -0.0979 15 6 4.5417 12.3094 -0.0971 16 6 4.1276 12.4421 1.3458 17 1 4.5356 11.7725 2.0884 18 6 3.2287 13.4190 1.7180 19 7 2.7323 14.2348 0.8138 20 14 2.7160 13.5840 3.5067 21 1 3.6384 14.5171 4.2021 22 1 1.3303 14.1132 3.5776 23 1 2.7715 12.2527 4.1622 24 6 5.9427 8.8661 -0.6152 25 6 5.4858 7.5876 -0.8682 26 6 2.6862 3.2702 1.1954 27 7 2.2455 2.0238 1.1524 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 2.8586 3.7581 -2.1432 34 1 3.5526 5.7184 0.8402 35 1 4.3856 5.4070 -1.8404 36 1 2.7076 6.0008 -1.8397 37 1 2.1685 8.1997 -0.9752 38 1 2.9708 10.4805 -0.5151 39 1 7.3523 11.7026 -1.0750 40 1 7.0921 12.2992 0.5817 41 1 7.4247 10.5736 0.2991 42 1 5.0086 13.2371 -0.4279 43 1 3.6636 12.1061 -0.7098 44 1 2.0996 14.9219 1.0755 45 1 7.0022 9.0522 -0.5178 46 1 6.1885 6.7736 -0.9681 47 1 2.8590 3.7579 2.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902204454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:00 Heat of formation + Delta-G solvation = 58.744461 kcal Electronic energy + Delta-G solvation = -25870.244477 eV Core-core repulsion = 22244.968860 eV Total energy + Delta-G solvation = -3625.275618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93736 -40.52252 -38.14446 -36.77799 -34.86666 -34.56780 -34.32293 -31.96886 -31.93718 -29.79960 -29.44385 -27.46270 -26.24945 -25.52292 -24.84356 -23.67861 -23.04040 -22.45128 -21.15286 -19.01945 -18.65677 -18.12126 -17.99964 -17.31354 -16.95905 -16.38951 -16.03327 -15.98532 -15.62451 -15.36933 -14.97971 -14.90864 -14.73623 -14.57144 -14.36107 -14.19746 -14.04702 -13.90364 -13.32556 -13.21149 -13.18116 -13.02988 -12.74030 -12.70201 -12.56474 -12.29838 -12.11146 -11.94041 -11.90499 -11.76438 -11.73533 -11.58427 -11.34117 -10.66426 -10.51873 -10.10290 -9.72269 -8.54431 -8.39718 -7.87586 -6.39564 0.18175 0.22935 0.66219 0.69073 1.35499 1.36885 1.47262 2.31233 2.40651 2.59353 2.89115 3.04377 3.14419 3.23700 3.38234 3.64766 3.87473 4.00609 4.02465 4.19923 4.26254 4.36589 4.38695 4.45031 4.49192 4.61907 4.64413 4.69800 4.80238 4.84133 4.84298 4.88319 4.99282 5.06444 5.07109 5.18491 5.20891 5.28440 5.30557 5.49372 5.55415 5.60856 5.67322 5.84292 5.93210 6.04346 6.14219 6.25858 6.45947 6.63891 6.79552 6.88822 7.28707 7.32323 8.80952 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002186 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.688457 B =12805.476438 C =13893.100953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C 0.226 3.774 4 N -0.492 5.492 5 C 0.061 3.939 6 C 0.123 3.877 7 N -0.717 5.717 8 C 0.181 3.819 9 C -0.182 4.182 10 C -0.051 4.051 11 C -0.220 4.220 12 C 0.220 3.780 13 N -0.629 5.629 14 C 0.096 3.904 15 C 0.264 3.736 16 C -0.540 4.540 17 H 0.050 0.950 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.271 1.271 24 C -0.220 4.220 25 C -0.044 4.044 26 C 0.062 3.938 27 N -0.494 5.494 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.408 0.592 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.009 0.991 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.134 0.866 46 H 0.146 0.854 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -22.820 -3.696 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.043 4.043 4 N -0.205 5.205 5 C -0.112 4.112 6 C 0.012 3.988 7 N -0.345 5.345 8 C 0.058 3.942 9 C -0.185 4.185 10 C -0.070 4.070 11 C -0.242 4.242 12 C 0.114 3.886 13 N -0.335 5.335 14 C -0.047 4.047 15 C 0.143 3.857 16 C -0.579 4.579 17 H 0.068 0.932 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.785 3.215 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.243 4.243 25 C -0.063 4.063 26 C -0.110 4.110 27 N -0.207 5.207 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.199 0.801 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.151 0.849 46 H 0.163 0.837 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.379 -23.281 -3.890 23.724 hybrid contribution -0.127 2.313 1.252 2.634 sum 2.252 -20.968 -2.638 21.253 Atomic orbital electron populations 1.21655 0.93612 1.03078 1.01244 1.20246 0.96748 0.87283 1.04134 1.23226 0.98827 0.98923 0.83314 1.68037 1.11521 1.10101 1.30840 1.23092 0.99540 0.90561 0.97969 1.19687 0.95095 0.87600 0.96431 1.44897 1.70690 1.09353 1.09557 1.20144 1.00753 0.88089 0.85175 1.19397 0.93324 0.94429 1.11355 1.20856 0.99575 0.91142 0.95475 1.20797 0.94293 0.98232 1.10912 1.18313 0.93346 0.85248 0.91662 1.47021 1.06623 1.05520 1.74375 1.21633 0.80197 1.01964 1.00896 1.18802 0.87603 0.84043 0.95282 1.21751 1.25751 1.15752 0.94622 0.93158 1.25773 0.95910 0.95152 1.01881 1.70026 1.31456 1.19765 1.35286 0.85517 0.77693 0.78425 0.79828 1.19700 1.20568 1.19569 1.20824 0.99094 0.92403 1.11946 1.20950 0.95036 0.95628 0.94657 1.23087 0.99288 0.90682 0.97978 1.68041 1.11663 1.10018 1.30970 0.93401 0.89757 0.93530 0.89053 0.89204 0.80097 0.75545 0.89725 0.90848 0.85685 0.88657 0.92807 0.92547 0.90122 0.97280 0.96916 0.92402 0.84866 0.83678 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.05 -0.76 6.37 29.85 0.19 -0.57 16 3 C 0.23 5.14 6.89 138.76 0.96 6.10 16 4 N -0.49 -11.34 10.32 -187.36 -1.93 -13.28 16 5 C 0.06 1.20 10.59 84.88 0.90 2.10 16 6 C 0.12 2.33 6.70 38.38 0.26 2.59 16 7 N -0.72 -12.02 5.74 -342.45 -1.96 -13.98 16 8 C 0.18 2.96 5.08 85.63 0.44 3.39 16 9 C -0.18 -4.14 5.25 -19.84 -0.10 -4.25 16 10 C -0.05 -1.49 9.69 22.25 0.22 -1.27 16 11 C -0.22 -8.35 9.21 22.40 0.21 -8.15 16 12 C 0.22 8.20 6.55 38.21 0.25 8.45 16 13 N -0.63 -25.89 2.99 -726.58 -2.17 -28.07 16 14 C 0.10 3.11 10.19 127.77 1.30 4.41 16 15 C 0.26 13.38 4.91 85.63 0.42 13.80 16 16 C -0.54 -29.40 9.39 25.60 0.24 -29.16 16 17 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 20 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C -0.22 -6.33 9.21 22.40 0.21 -6.12 16 25 C -0.04 -1.00 9.69 22.25 0.22 -0.79 16 26 C 0.06 1.26 11.20 84.88 0.95 2.22 16 27 N -0.49 -11.62 10.32 -187.36 -1.93 -13.55 16 28 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.18 2.70 6.91 -2.91 -0.02 2.68 16 34 H 0.41 6.83 8.50 -92.71 -0.79 6.04 16 35 H 0.08 1.11 7.94 -2.38 -0.02 1.09 16 36 H 0.07 1.13 7.94 -2.39 -0.02 1.11 16 37 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.10 4.31 6.14 -2.91 -0.02 4.29 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 41 H 0.08 2.16 6.20 -2.39 -0.01 2.15 16 42 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 43 H 0.01 0.70 6.20 -2.39 -0.01 0.69 16 44 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.13 3.31 6.14 -2.91 -0.02 3.30 16 46 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 47 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -65.24 391.06 2.31 -62.92 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.19 Total: 21.26 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 7.82 Total: -7.46 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -7.72 Total: -121.88 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -65.24 2.31 -62.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902204454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.668 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds