Wall clock time and date at job start Tue Mar 31 2020 14:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38274 * 119.93967 * 2 1 4 4 C 1.38129 * 120.06637 * 180.02562 * 3 2 1 5 5 C 1.38823 * 119.92941 * 359.97438 * 4 3 2 6 6 N 1.40251 * 120.05845 * 180.02562 * 5 4 3 7 7 C 1.36120 * 125.94215 * 180.02562 * 6 5 4 8 8 C 1.35360 * 106.05060 * 179.97438 * 7 6 5 9 9 C 1.50705 * 126.73228 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47094 * 94.99905 * 9 8 7 11 11 C 1.36935 * 120.00578 * 270.00415 * 10 9 8 12 12 H 1.07998 * 120.00196 * 141.72964 * 11 10 9 13 13 C 1.38809 * 119.99663 * 321.73876 * 11 10 9 14 14 N 1.31622 * 120.00282 * 156.39818 * 13 11 10 15 15 Si 1.86801 * 119.99987 * 336.39078 * 13 11 10 16 16 H 1.48492 * 109.47096 * 95.10475 * 15 13 11 17 17 H 1.48502 * 109.47056 * 215.10457 * 15 13 11 18 18 H 1.48504 * 109.47227 * 335.10222 * 15 13 11 19 19 C 1.46506 * 119.99773 * 90.00232 * 10 9 8 20 20 C 1.55232 * 110.46762 * 240.04277 * 19 10 9 21 21 C 1.54897 * 102.58769 * 203.39495 * 20 19 10 22 22 C 1.54265 * 104.31171 * 37.92968 * 21 20 19 23 23 C 1.53873 * 106.59842 * 336.32565 * 22 21 20 24 24 N 1.33778 * 106.54173 * 0.24153 * 8 7 6 25 25 N 1.28605 * 109.05470 * 359.59277 * 24 8 7 26 26 C 1.38819 * 119.87550 * 0.28133 * 5 4 3 27 27 C 1.38122 * 119.93055 * 359.44342 * 26 5 4 28 28 H 1.09005 * 109.47225 * 89.99668 * 1 2 3 29 29 H 1.08997 * 109.47804 * 209.99853 * 1 2 3 30 30 H 1.09006 * 109.46895 * 330.00335 * 1 2 3 31 31 H 1.08001 * 119.96705 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.03322 * 179.97438 * 4 3 2 33 33 H 1.08004 * 126.96940 * 359.97438 * 7 6 5 34 34 H 1.09004 * 109.46956 * 335.00222 * 9 8 7 35 35 H 1.08998 * 109.47541 * 215.00178 * 9 8 7 36 36 H 0.96995 * 119.99930 * 179.97438 * 14 13 11 37 37 H 1.09007 * 110.43251 * 2.69414 * 19 10 9 38 38 H 1.09005 * 110.89844 * 85.10740 * 20 19 10 39 39 H 1.08995 * 110.76788 * 321.62010 * 20 19 10 40 40 H 1.08998 * 110.48486 * 279.18778 * 21 20 19 41 41 H 1.08990 * 110.49065 * 156.67698 * 21 20 19 42 42 H 1.09002 * 110.03346 * 95.60854 * 22 21 20 43 43 H 1.09005 * 110.03458 * 216.99398 * 22 21 20 44 44 H 1.09007 * 110.03012 * 119.28652 * 23 22 21 45 45 H 1.08998 * 110.03528 * 240.66505 * 23 22 21 46 46 H 1.08004 * 120.03190 * 179.72045 * 26 5 4 47 47 H 1.08005 * 119.96460 * 180.27199 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5784 1.2013 -0.0005 5 6 4.2737 -0.0003 -0.0005 6 7 5.6762 -0.0004 -0.0005 7 6 6.4751 -1.1024 -0.0010 8 6 7.7480 -0.6419 -0.0014 9 6 9.0064 -1.4711 -0.0015 10 7 9.4801 -1.6395 -1.3775 11 6 9.0515 -2.7047 -2.1237 12 1 8.8426 -2.5780 -3.1756 13 6 8.8855 -3.9474 -1.5279 14 7 8.0684 -4.8299 -2.0628 15 14 9.8218 -4.3675 0.0330 16 1 8.9676 -4.0841 1.2141 17 1 10.1860 -5.8071 0.0195 18 1 11.0564 -3.5453 0.1061 19 6 10.4124 -0.6683 -1.9553 20 6 9.7903 0.0013 -3.2100 21 6 11.0393 0.4745 -3.9944 22 6 12.0701 -0.6544 -3.7872 23 6 11.6715 -1.3809 -2.4906 24 7 7.6699 0.6936 0.0043 25 7 6.4318 1.0417 -0.0007 26 6 3.5781 -1.2017 -0.0059 27 6 2.1969 -1.1984 0.0004 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6556 2.1326 -0.0004 32 1 4.1168 2.1374 -0.0010 33 1 6.1577 -2.1348 -0.0011 34 1 8.7975 -2.4486 0.4331 35 1 9.7731 -0.9679 0.5877 36 1 7.9527 -5.6983 -1.6466 37 1 10.6855 0.0839 -1.2151 38 1 9.1664 0.8498 -2.9289 39 1 9.2202 -0.7229 -3.7919 40 1 11.4138 1.4128 -3.5854 41 1 10.8049 0.5874 -5.0528 42 1 12.0392 -1.3473 -4.6280 43 1 13.0704 -0.2330 -3.6874 44 1 11.4472 -2.4264 -2.7024 45 1 12.4786 -1.3128 -1.7612 46 1 4.1165 -2.1379 -0.0105 47 1 1.6553 -2.1328 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906269041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:00 Heat of formation + Delta-G solvation = 143.240525 kcal Electronic energy + Delta-G solvation = -27677.878590 eV Core-core repulsion = 24056.266996 eV Total energy + Delta-G solvation = -3621.611594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.89317 -39.51013 -37.80910 -35.18376 -34.39931 -31.92092 -31.49487 -31.27981 -30.46344 -27.88286 -27.33146 -26.92790 -25.89466 -23.36091 -23.05696 -22.46711 -20.92471 -20.36270 -19.81849 -19.01031 -18.18154 -16.52542 -16.01192 -15.63011 -15.44507 -15.32554 -15.24497 -14.80949 -14.37883 -14.09750 -13.99024 -13.63759 -13.47567 -13.10394 -12.69428 -12.57161 -12.54683 -12.46932 -12.38763 -11.85121 -11.61747 -11.41767 -11.10667 -10.95986 -10.77915 -10.52591 -10.50174 -10.48650 -10.38928 -10.31565 -9.99875 -9.87346 -9.65044 -9.49886 -9.22501 -8.68158 -8.54832 -8.30873 -6.85220 -6.07133 -3.46872 0.69239 1.13124 2.28296 2.61681 3.08567 3.25153 3.43617 3.49871 3.57784 4.45843 4.47543 4.60429 4.70633 4.80966 4.98133 5.02399 5.11545 5.19911 5.33039 5.36453 5.41865 5.42302 5.43014 5.57713 5.64275 5.66450 5.75161 5.76487 5.88574 6.04978 6.13289 6.21196 6.23684 6.26808 6.32571 6.33022 6.43116 6.47789 6.55458 6.58258 6.60173 6.62922 6.75077 6.79990 7.03760 7.12411 7.18551 7.25294 8.00315 8.38124 8.94727 8.96638 9.65400 10.08289 11.07940 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003678 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.398476 B = 7610.196208 C = 8695.735200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.103 4.103 4 C -0.104 4.104 5 C 0.134 3.866 6 N -0.255 5.255 7 C -0.033 4.033 8 C -0.006 4.006 9 C 0.213 3.787 10 N -0.585 5.585 11 C -0.258 4.258 12 H 0.080 0.920 13 C 0.040 3.960 14 N -0.895 5.895 15 Si 0.862 3.138 16 H -0.285 1.285 17 H -0.300 1.300 18 H -0.263 1.263 19 C 0.176 3.824 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.136 4.136 24 N -0.255 5.255 25 N -0.100 5.100 26 C -0.115 4.115 27 C -0.098 4.098 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.189 0.811 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.138 0.862 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 8.312 4.124 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.124 4.124 5 C 0.042 3.958 6 N -0.043 5.043 7 C -0.181 4.181 8 C -0.144 4.144 9 C 0.084 3.916 10 N -0.305 5.305 11 C -0.386 4.386 12 H 0.097 0.903 13 C -0.161 4.161 14 N -0.536 5.536 15 Si 0.691 3.309 16 H -0.213 1.213 17 H -0.228 1.228 18 H -0.188 1.188 19 C 0.070 3.930 20 C -0.170 4.170 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.175 4.175 24 N -0.124 5.124 25 N -0.077 5.077 26 C -0.136 4.136 27 C -0.117 4.117 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.206 0.794 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.156 0.844 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.952 9.648 4.115 14.459 hybrid contribution 0.289 -1.649 0.683 1.808 sum -9.664 7.999 4.798 13.431 Atomic orbital electron populations 1.20798 0.90709 1.02949 1.02578 1.20046 0.96509 0.93040 0.99462 1.20921 0.92930 0.98061 1.00292 1.20953 0.94320 0.96984 1.00164 1.17689 0.78328 0.95587 1.04171 1.44604 1.05551 1.06043 1.48149 1.23617 0.90595 0.94108 1.09739 1.23444 0.97135 0.90845 1.02948 1.19713 0.88272 0.95355 0.88246 1.44197 1.48399 1.26793 1.11065 1.18660 1.39444 0.85519 0.95010 0.90258 1.25457 0.97465 0.95679 0.97478 1.69898 1.34347 1.07728 1.41584 0.87145 0.82629 0.77144 0.83935 1.21274 1.22758 1.18751 1.21326 0.88287 0.90157 0.93273 1.22889 0.96418 0.99606 0.98127 1.22275 0.96689 0.97728 0.99355 1.22036 0.97630 0.97361 0.98566 1.22529 0.97445 1.02146 0.95398 1.74960 1.08501 1.13031 1.15906 1.78167 0.96726 1.11911 1.20912 1.21030 0.94814 0.96672 1.01064 1.20898 0.92765 0.98189 0.99848 0.90897 0.91318 0.91398 0.84996 0.84186 0.79419 0.91058 0.92092 0.92707 0.92216 0.93011 0.90922 0.92619 0.92869 0.92517 0.93189 0.89767 0.93529 0.84393 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.09 -0.86 5.88 -104.59 -0.62 -1.48 16 3 C -0.10 -1.05 9.69 -39.61 -0.38 -1.44 16 4 C -0.10 -1.35 9.62 -39.41 -0.38 -1.73 16 5 C 0.13 2.03 6.68 -83.57 -0.56 1.47 16 6 N -0.26 -4.68 3.56 -10.47 -0.04 -4.72 16 7 C -0.03 -0.65 10.85 -16.68 -0.18 -0.83 16 8 C -0.01 -0.12 6.83 -82.77 -0.57 -0.68 16 9 C 0.21 4.60 5.07 -5.19 -0.03 4.57 16 10 N -0.59 -13.39 2.08 -164.92 -0.34 -13.74 16 11 C -0.26 -6.71 8.17 -15.06 -0.12 -6.83 16 12 H 0.08 2.29 6.87 -52.49 -0.36 1.93 16 13 C 0.04 1.06 5.27 -17.43 -0.09 0.97 16 14 N -0.90 -25.41 13.97 55.49 0.78 -24.64 16 15 Si 0.86 20.58 25.19 -169.99 -4.28 16.30 16 16 H -0.28 -6.54 6.65 56.52 0.38 -6.16 16 17 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 18 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.18 3.60 3.40 -66.08 -0.22 3.37 16 20 C -0.13 -2.57 6.47 -24.55 -0.16 -2.73 16 21 C -0.12 -2.00 6.82 -25.07 -0.17 -2.17 16 22 C -0.12 -1.93 6.80 -25.61 -0.17 -2.10 16 23 C -0.14 -2.60 6.41 -25.62 -0.16 -2.77 16 24 N -0.26 -5.43 12.40 33.29 0.41 -5.02 16 25 N -0.10 -1.99 12.42 60.35 0.75 -1.24 16 26 C -0.11 -1.51 9.46 -39.41 -0.37 -1.88 16 27 C -0.10 -1.04 9.69 -39.61 -0.38 -1.42 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.80 7.69 -52.49 -0.40 1.40 16 33 H 0.19 3.44 7.11 -52.48 -0.37 3.07 16 34 H 0.07 1.60 3.45 -51.93 -0.18 1.42 16 35 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.06 1.18 7.84 -51.92 -0.41 0.77 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.60 6.62 -51.93 -0.34 1.25 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.84 6.92 -51.93 -0.36 1.48 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.14 1.77 6.77 -52.48 -0.36 1.42 16 47 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -29.98 376.36 -8.26 -38.24 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.00 Total: 5.18 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -4.21 Total: -16.05 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 1.56 Total: -49.34 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.28 Total: 16.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.98 -8.26 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906269041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.485 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds