Wall clock time and date at job start Tue Mar 31 2020 14:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38274 * 119.93967 * 2 1 4 4 C 1.38129 * 120.06637 * 180.02562 * 3 2 1 5 5 C 1.38823 * 119.92941 * 359.97438 * 4 3 2 6 6 N 1.40251 * 120.05845 * 180.02562 * 5 4 3 7 7 C 1.36120 * 125.94215 * 180.02562 * 6 5 4 8 8 C 1.35360 * 106.05060 * 179.97438 * 7 6 5 9 9 C 1.50705 * 126.73228 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47094 * 94.99905 * 9 8 7 11 11 C 1.36935 * 120.00578 * 270.00415 * 10 9 8 12 12 H 1.07998 * 120.00196 * 141.72964 * 11 10 9 13 13 C 1.38809 * 119.99663 * 321.73876 * 11 10 9 14 14 N 1.31622 * 120.00282 * 156.39818 * 13 11 10 15 15 Si 1.86801 * 119.99987 * 336.39078 * 13 11 10 16 16 H 1.48492 * 109.47096 * 95.10475 * 15 13 11 17 17 H 1.48502 * 109.47056 * 215.10457 * 15 13 11 18 18 H 1.48504 * 109.47227 * 335.10222 * 15 13 11 19 19 C 1.46506 * 119.99773 * 90.00232 * 10 9 8 20 20 C 1.55232 * 110.46762 * 240.04277 * 19 10 9 21 21 C 1.54897 * 102.58769 * 203.39495 * 20 19 10 22 22 C 1.54265 * 104.31171 * 37.92968 * 21 20 19 23 23 C 1.53873 * 106.59842 * 336.32565 * 22 21 20 24 24 N 1.33778 * 106.54173 * 0.24153 * 8 7 6 25 25 N 1.28605 * 109.05470 * 359.59277 * 24 8 7 26 26 C 1.38819 * 119.87550 * 0.28133 * 5 4 3 27 27 C 1.38122 * 119.93055 * 359.44342 * 26 5 4 28 28 H 1.09005 * 109.47225 * 89.99668 * 1 2 3 29 29 H 1.08997 * 109.47804 * 209.99853 * 1 2 3 30 30 H 1.09006 * 109.46895 * 330.00335 * 1 2 3 31 31 H 1.08001 * 119.96705 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.03322 * 179.97438 * 4 3 2 33 33 H 1.08004 * 126.96940 * 359.97438 * 7 6 5 34 34 H 1.09004 * 109.46956 * 335.00222 * 9 8 7 35 35 H 1.08998 * 109.47541 * 215.00178 * 9 8 7 36 36 H 0.96995 * 119.99930 * 179.97438 * 14 13 11 37 37 H 1.09007 * 110.43251 * 2.69414 * 19 10 9 38 38 H 1.09005 * 110.89844 * 85.10740 * 20 19 10 39 39 H 1.08995 * 110.76788 * 321.62010 * 20 19 10 40 40 H 1.08998 * 110.48486 * 279.18778 * 21 20 19 41 41 H 1.08990 * 110.49065 * 156.67698 * 21 20 19 42 42 H 1.09002 * 110.03346 * 95.60854 * 22 21 20 43 43 H 1.09005 * 110.03458 * 216.99398 * 22 21 20 44 44 H 1.09007 * 110.03012 * 119.28652 * 23 22 21 45 45 H 1.08998 * 110.03528 * 240.66505 * 23 22 21 46 46 H 1.08004 * 120.03190 * 179.72045 * 26 5 4 47 47 H 1.08005 * 119.96460 * 180.27199 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5784 1.2013 -0.0005 5 6 4.2737 -0.0003 -0.0005 6 7 5.6762 -0.0004 -0.0005 7 6 6.4751 -1.1024 -0.0010 8 6 7.7480 -0.6419 -0.0014 9 6 9.0064 -1.4711 -0.0015 10 7 9.4801 -1.6395 -1.3775 11 6 9.0515 -2.7047 -2.1237 12 1 8.8426 -2.5780 -3.1756 13 6 8.8855 -3.9474 -1.5279 14 7 8.0684 -4.8299 -2.0628 15 14 9.8218 -4.3675 0.0330 16 1 8.9676 -4.0841 1.2141 17 1 10.1860 -5.8071 0.0195 18 1 11.0564 -3.5453 0.1061 19 6 10.4124 -0.6683 -1.9553 20 6 9.7903 0.0013 -3.2100 21 6 11.0393 0.4745 -3.9944 22 6 12.0701 -0.6544 -3.7872 23 6 11.6715 -1.3809 -2.4906 24 7 7.6699 0.6936 0.0043 25 7 6.4318 1.0417 -0.0007 26 6 3.5781 -1.2017 -0.0059 27 6 2.1969 -1.1984 0.0004 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6556 2.1326 -0.0004 32 1 4.1168 2.1374 -0.0010 33 1 6.1577 -2.1348 -0.0011 34 1 8.7975 -2.4486 0.4331 35 1 9.7731 -0.9679 0.5877 36 1 7.9527 -5.6983 -1.6466 37 1 10.6855 0.0839 -1.2151 38 1 9.1664 0.8498 -2.9289 39 1 9.2202 -0.7229 -3.7919 40 1 11.4138 1.4128 -3.5854 41 1 10.8049 0.5874 -5.0528 42 1 12.0392 -1.3473 -4.6280 43 1 13.0704 -0.2330 -3.6874 44 1 11.4472 -2.4264 -2.7024 45 1 12.4786 -1.3128 -1.7612 46 1 4.1165 -2.1379 -0.0105 47 1 1.6553 -2.1328 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906269041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:59 Heat of formation + Delta-G solvation = 127.942157 kcal Electronic energy + Delta-G solvation = -27678.541977 eV Core-core repulsion = 24056.266996 eV Total energy + Delta-G solvation = -3622.274981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.39719 -40.47697 -39.42575 -36.65726 -35.81201 -33.76753 -32.63770 -32.48126 -31.83571 -29.39487 -28.82275 -28.06391 -27.57542 -24.77500 -24.26579 -23.89051 -22.24459 -21.66051 -21.29356 -20.65913 -19.52660 -18.34071 -17.55528 -17.20633 -16.88190 -16.59454 -16.32587 -16.06267 -15.95817 -15.39206 -14.94333 -14.82555 -14.64858 -14.57286 -14.51508 -14.22088 -14.06996 -13.44631 -13.24498 -13.09308 -12.97355 -12.81650 -12.65185 -12.39595 -12.23346 -12.14355 -12.05152 -11.92213 -11.83957 -11.78995 -11.65899 -11.56129 -11.25339 -11.12925 -10.56607 -10.25438 -10.14389 -9.41048 -8.73770 -8.15343 -5.53505 -0.42892 0.21877 0.95987 1.28832 1.32428 1.44178 1.51092 1.57899 2.45468 2.61035 3.09712 3.30077 3.37476 3.51368 3.76074 3.88915 3.90320 3.94978 3.99023 4.08906 4.18028 4.24203 4.26574 4.41349 4.53069 4.62046 4.66705 4.72855 4.74231 4.80562 4.86901 4.88631 4.88914 4.96137 4.96373 5.04539 5.11702 5.13813 5.20983 5.25740 5.29454 5.31946 5.49467 5.50547 5.59007 5.63436 5.63825 5.92858 6.00931 6.27279 7.01156 7.40781 7.65594 8.10313 9.03903 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.003678 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.398476 B = 7610.196208 C = 8695.735200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C -0.099 4.099 4 C -0.110 4.110 5 C 0.086 3.914 6 N -0.241 5.241 7 C -0.041 4.041 8 C -0.021 4.021 9 C 0.213 3.787 10 N -0.593 5.593 11 C -0.240 4.240 12 H 0.037 0.963 13 C -0.002 4.002 14 N -0.940 5.940 15 Si 0.919 3.081 16 H -0.269 1.269 17 H -0.309 1.309 18 H -0.255 1.255 19 C 0.168 3.832 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.134 4.134 24 N -0.277 5.277 25 N -0.107 5.107 26 C -0.124 4.124 27 C -0.100 4.100 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.194 0.806 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.132 0.868 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.161 9.772 5.073 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.118 4.118 4 C -0.130 4.130 5 C -0.005 4.005 6 N -0.029 5.029 7 C -0.190 4.190 8 C -0.160 4.160 9 C 0.085 3.915 10 N -0.313 5.313 11 C -0.370 4.370 12 H 0.055 0.945 13 C -0.200 4.200 14 N -0.583 5.583 15 Si 0.747 3.253 16 H -0.196 1.196 17 H -0.237 1.237 18 H -0.179 1.179 19 C 0.063 3.937 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.173 4.173 24 N -0.144 5.144 25 N -0.085 5.085 26 C -0.145 4.145 27 C -0.118 4.118 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.182 0.818 32 H 0.153 0.847 33 H 0.211 0.789 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.150 0.850 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.070 11.160 5.079 16.519 hybrid contribution 0.358 -2.017 0.347 2.077 sum -10.712 9.143 5.425 15.093 Atomic orbital electron populations 1.20906 0.87843 1.04521 1.03716 1.20522 0.98466 0.92252 0.96361 1.21310 0.91701 0.99888 0.98866 1.21095 0.95651 0.95960 1.00289 1.18142 0.76797 0.97376 1.08151 1.44763 1.06836 1.05083 1.46235 1.23702 0.90652 0.94781 1.09832 1.23339 0.97412 0.91085 1.04132 1.19690 0.89099 0.95235 0.87498 1.44247 1.49219 1.26474 1.11332 1.18333 1.38383 0.86707 0.93569 0.94485 1.25875 0.98056 0.95469 1.00564 1.70003 1.36232 1.08290 1.43769 0.86216 0.81707 0.76135 0.81233 1.19610 1.23750 1.17905 1.21537 0.88502 0.90029 0.93667 1.22762 0.97563 0.98259 0.98078 1.22242 0.94627 0.98507 0.99664 1.22009 0.99141 0.97039 0.96795 1.22466 0.97226 1.00245 0.97330 1.74894 1.09261 1.13009 1.17241 1.78055 0.96604 1.12474 1.21324 1.21166 0.96101 0.95789 1.01408 1.21263 0.91635 1.00008 0.98884 0.89742 0.90012 0.89713 0.81758 0.84701 0.78916 0.91914 0.90301 0.92776 0.91018 0.94037 0.94389 0.90402 0.91652 0.92832 0.90081 0.93082 0.91896 0.85049 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 71.24 0.71 -0.28 16 2 C -0.08 -1.21 5.88 -19.85 -0.12 -1.33 16 3 C -0.10 -1.77 9.69 22.25 0.22 -1.55 16 4 C -0.11 -2.78 9.62 22.38 0.22 -2.57 16 5 C 0.09 2.63 6.68 38.07 0.25 2.88 16 6 N -0.24 -9.09 3.56 -187.05 -0.67 -9.76 16 7 C -0.04 -1.68 10.85 83.36 0.90 -0.77 16 8 C -0.02 -0.89 6.83 41.60 0.28 -0.60 16 9 C 0.21 9.26 5.07 85.64 0.43 9.70 16 10 N -0.59 -27.73 2.08 -675.70 -1.40 -29.13 16 11 C -0.24 -13.07 8.17 84.03 0.69 -12.38 16 12 H 0.04 2.31 6.87 -2.91 -0.02 2.29 16 13 C 0.00 -0.14 5.27 84.86 0.45 0.31 16 14 N -0.94 -55.49 13.97 21.65 0.30 -55.19 16 15 Si 0.92 43.24 25.19 68.60 1.73 44.97 16 16 H -0.27 -11.89 6.65 99.48 0.66 -11.23 16 17 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 C 0.17 6.89 3.40 46.18 0.16 7.05 16 20 C -0.13 -5.08 6.47 32.01 0.21 -4.88 16 21 C -0.11 -3.49 6.82 31.67 0.22 -3.27 16 22 C -0.11 -3.46 6.80 31.32 0.21 -3.25 16 23 C -0.13 -5.02 6.41 31.32 0.20 -4.82 16 24 N -0.28 -11.99 12.40 -48.59 -0.60 -12.59 16 25 N -0.11 -4.37 12.42 37.02 0.46 -3.91 16 26 C -0.12 -3.25 9.46 22.38 0.21 -3.03 16 27 C -0.10 -1.90 9.69 22.25 0.22 -1.68 16 28 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 30 H 0.08 0.52 8.08 -2.38 -0.02 0.50 16 31 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.14 3.47 7.69 -2.91 -0.02 3.45 16 33 H 0.19 7.44 7.11 -2.91 -0.02 7.42 16 34 H 0.06 2.82 3.45 -2.38 -0.01 2.81 16 35 H 0.08 3.10 7.92 -2.39 -0.02 3.09 16 36 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 37 H 0.07 2.77 7.84 -2.38 -0.02 2.75 16 38 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 2.04 8.14 -2.38 -0.02 2.03 16 44 H 0.05 2.26 6.92 -2.38 -0.02 2.24 16 45 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.13 3.51 6.77 -2.91 -0.02 3.49 16 47 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -68.32 376.36 6.20 -62.12 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.92 Total: 23.96 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 5.46 Total: -20.47 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -1.91 Total: -110.58 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.73 Total: 44.97 kcal Total: -68.32 6.20 -62.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906269041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.063 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds