Wall clock time and date at job start Tue Mar 31 2020 14:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38285 * 119.93784 * 2 1 4 4 C 1.38123 * 120.06368 * 180.02562 * 3 2 1 5 5 C 1.38816 * 119.93754 * 0.02562 * 4 3 2 6 6 N 1.40245 * 120.06756 * 179.97438 * 5 4 3 7 7 C 1.36119 * 125.94357 * 180.30482 * 6 5 4 8 8 C 1.35373 * 106.04871 * 180.17639 * 7 6 5 9 9 C 1.50696 * 126.73150 * 179.85994 * 8 7 6 10 10 N 1.46896 * 109.47439 * 94.68269 * 9 8 7 11 11 C 1.46900 * 111.00108 * 199.59450 * 10 9 8 12 12 C 1.50701 * 109.47028 * 169.99809 * 11 10 9 13 13 H 1.08001 * 120.00285 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99749 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00213 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99787 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47200 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46944 * 119.99998 * 16 14 12 19 19 H 1.48499 * 109.47141 * 240.00014 * 16 14 12 20 20 C 1.46896 * 111.00364 * 75.64016 * 10 9 8 21 21 C 1.53001 * 109.47171 * 58.35647 * 20 10 9 22 22 C 1.53010 * 117.49751 * 244.06790 * 21 20 10 23 23 C 1.53003 * 117.50235 * 175.40803 * 21 20 10 24 24 N 1.33773 * 106.53682 * 359.59313 * 8 7 6 25 25 N 1.28605 * 109.06441 * 0.26412 * 24 8 7 26 26 C 1.38828 * 119.86786 * 0.27296 * 5 4 3 27 27 C 1.38119 * 119.93579 * 359.47138 * 26 5 4 28 28 H 1.08994 * 109.47695 * 89.99307 * 1 2 3 29 29 H 1.09000 * 109.47278 * 210.00089 * 1 2 3 30 30 H 1.09005 * 109.46778 * 329.99947 * 1 2 3 31 31 H 1.07994 * 119.96449 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.02938 * 179.97438 * 4 3 2 33 33 H 1.07995 * 126.97595 * 0.03144 * 7 6 5 34 34 H 1.08999 * 109.47182 * 334.68076 * 9 8 7 35 35 H 1.09003 * 109.47047 * 214.68276 * 9 8 7 36 36 H 1.08997 * 109.47186 * 289.99707 * 11 10 9 37 37 H 1.09005 * 109.46934 * 49.99923 * 11 10 9 38 38 H 0.97001 * 120.00193 * 179.97438 * 15 14 12 39 39 H 1.09008 * 109.47058 * 298.35761 * 20 10 9 40 40 H 1.09001 * 109.47829 * 178.35803 * 20 10 9 41 41 H 1.08994 * 115.55064 * 29.72937 * 21 20 10 42 42 H 1.09001 * 117.49785 * 359.97438 * 22 21 20 43 43 H 1.09001 * 117.49754 * 145.01879 * 22 21 20 44 44 H 1.08995 * 117.49572 * 214.97509 * 23 21 20 45 45 H 1.09002 * 117.49292 * 359.97438 * 23 21 20 46 46 H 1.08004 * 120.02786 * 179.73153 * 26 5 4 47 47 H 1.08002 * 119.96815 * 180.25398 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1983 0.0000 4 6 3.5783 1.2014 -0.0005 5 6 4.2737 0.0000 -0.0016 6 7 5.6762 -0.0002 -0.0027 7 6 6.4751 -1.1022 -0.0097 8 6 7.7481 -0.6417 -0.0040 9 6 9.0065 -1.4707 -0.0052 10 7 9.4811 -1.6385 -1.3852 11 6 10.3959 -2.7830 -1.4918 12 6 10.6672 -3.0754 -2.9451 13 1 10.2066 -2.4712 -3.7127 14 6 11.5036 -4.1143 -3.2947 15 7 12.0642 -4.8504 -2.3600 16 14 11.8394 -4.4773 -5.0961 17 1 11.0935 -3.5120 -5.9430 18 1 13.2944 -4.3488 -5.3640 19 1 11.3978 -5.8591 -5.4133 20 6 10.1171 -0.4088 -1.8764 21 6 11.2864 -0.0389 -0.9616 22 6 11.1859 1.2741 -0.1824 23 6 12.1490 1.1581 -1.3666 24 7 7.6698 0.6938 -0.0031 25 7 6.4319 1.0420 -0.0023 26 6 3.5782 -1.2015 -0.0079 27 6 2.1970 -1.1983 -0.0020 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6555 2.1327 -0.0004 32 1 4.1167 2.1375 -0.0010 33 1 6.1578 -2.1345 -0.0159 34 1 8.7977 -2.4487 0.4286 35 1 9.7733 -0.9680 0.5842 36 1 11.3330 -2.5473 -0.9875 37 1 9.9412 -3.6563 -1.0242 38 1 12.6523 -5.5815 -2.6060 39 1 9.3877 0.4013 -1.8792 40 1 10.4852 -0.5697 -2.8896 41 1 11.7850 -0.8765 -0.4740 42 1 10.2869 1.8745 -0.3218 43 1 11.6189 1.3003 0.8176 44 1 13.2151 1.1081 -1.1451 45 1 11.8836 1.6819 -2.2850 46 1 4.1166 -2.1377 -0.0131 47 1 1.6554 -2.1327 -0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906271033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:53 Heat of formation + Delta-G solvation = 141.895976 kcal Electronic energy + Delta-G solvation = -26838.924591 eV Core-core repulsion = 23217.254694 eV Total energy + Delta-G solvation = -3621.669898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.43411 -40.46155 -39.58020 -36.76171 -35.97962 -34.65188 -32.90716 -32.48984 -31.92334 -29.33386 -28.39121 -27.82836 -25.93903 -24.29868 -24.08016 -23.27996 -23.15899 -22.21507 -21.69079 -20.66248 -19.26256 -18.34046 -17.61997 -17.00797 -16.71816 -16.60146 -16.30828 -16.08088 -15.72884 -15.64575 -15.24197 -14.96906 -14.66947 -14.53306 -14.26489 -14.11155 -13.61655 -13.37956 -13.27164 -13.01161 -12.90786 -12.78279 -12.68040 -12.57915 -12.51107 -12.38561 -12.24688 -12.02817 -11.89822 -11.80156 -11.67766 -11.37843 -11.08685 -10.70714 -10.55642 -10.27073 -10.10361 -9.39602 -8.93675 -8.15792 -6.23166 -0.40300 0.26004 0.97871 1.29288 1.41068 1.41585 1.44146 1.55284 2.43343 2.64540 2.97382 3.17091 3.21906 3.51413 3.58031 3.79925 3.85952 3.90906 3.92631 4.07725 4.12573 4.15411 4.21894 4.30179 4.39974 4.52066 4.56312 4.65283 4.76574 4.78705 4.83439 4.85750 4.89582 4.97760 5.00788 5.05184 5.07385 5.13093 5.27012 5.28085 5.31791 5.33403 5.36690 5.47461 5.54330 5.64291 5.70324 5.94606 6.10047 6.36929 6.65243 6.91686 7.41442 7.45058 8.94909 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.002844 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.021179 B = 9841.990388 C =11319.380271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 C -0.103 4.103 4 C -0.112 4.112 5 C 0.086 3.914 6 N -0.240 5.240 7 C -0.030 4.030 8 C -0.004 4.004 9 C 0.138 3.862 10 N -0.533 5.533 11 C 0.208 3.792 12 C -0.514 4.514 13 H 0.054 0.946 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.277 1.277 20 C 0.107 3.893 21 C -0.191 4.191 22 C -0.157 4.157 23 C -0.171 4.171 24 N -0.274 5.274 25 N -0.111 5.111 26 C -0.116 4.116 27 C -0.100 4.100 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.158 0.842 32 H 0.131 0.869 33 H 0.221 0.779 34 H 0.092 0.908 35 H 0.052 0.948 36 H -0.021 1.021 37 H 0.012 0.988 38 H 0.263 0.737 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.148 0.852 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.666 9.395 7.249 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C -0.122 4.122 4 C -0.132 4.132 5 C -0.004 4.004 6 N -0.028 5.028 7 C -0.179 4.179 8 C -0.141 4.141 9 C 0.008 3.992 10 N -0.256 5.256 11 C 0.083 3.917 12 C -0.553 4.553 13 H 0.073 0.927 14 C -0.191 4.191 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.203 1.203 20 C -0.022 4.022 21 C -0.210 4.210 22 C -0.194 4.194 23 C -0.209 4.209 24 N -0.141 5.141 25 N -0.088 5.088 26 C -0.137 4.137 27 C -0.118 4.118 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.175 0.825 32 H 0.149 0.851 33 H 0.238 0.762 34 H 0.111 0.889 35 H 0.070 0.930 36 H -0.004 1.004 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.166 0.834 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.869 10.698 6.979 26.194 hybrid contribution 1.538 -1.392 -0.347 2.103 sum -21.331 9.305 6.632 24.199 Atomic orbital electron populations 1.20909 0.88268 1.04395 1.03630 1.20515 0.98283 0.92520 0.96401 1.21266 0.91902 0.99814 0.99195 1.21078 0.95558 0.96319 1.00286 1.18091 0.76677 0.97329 1.08347 1.44760 1.06871 1.05217 1.45929 1.23900 0.89783 0.95577 1.08632 1.21958 0.95806 0.90766 1.05615 1.20232 0.90676 0.97440 0.90884 1.62177 1.39732 1.04555 1.19119 1.19431 0.88886 0.87341 0.96076 1.21408 1.26684 1.14293 0.92869 0.92736 1.25747 0.95715 0.95952 1.01705 1.70063 1.32426 1.20430 1.34251 0.85471 0.77773 0.78075 0.80118 1.19304 1.20647 1.20289 1.21491 0.92394 0.91183 0.97107 1.22803 1.01662 0.92281 1.04289 1.22957 1.01331 0.99105 0.96023 1.22928 0.97189 1.01251 0.99520 1.74959 1.09250 1.13220 1.16660 1.78181 0.96423 1.12767 1.21437 1.21222 0.95753 0.95944 1.00781 1.21294 0.92028 0.99739 0.98762 0.89828 0.89913 0.90156 0.82461 0.85097 0.76237 0.88929 0.93034 1.00371 0.97015 0.92805 0.91911 0.92495 0.90024 0.88718 0.88644 0.88407 0.88612 0.83412 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 71.24 0.71 0.11 16 2 C -0.08 -0.87 5.88 -19.84 -0.12 -0.98 16 3 C -0.10 -1.42 9.69 22.25 0.22 -1.20 16 4 C -0.11 -2.27 9.62 22.38 0.22 -2.05 16 5 C 0.09 1.98 6.68 38.07 0.25 2.23 16 6 N -0.24 -7.01 3.56 -187.05 -0.67 -7.68 16 7 C -0.03 -0.89 10.85 83.37 0.90 0.02 16 8 C 0.00 -0.14 6.28 41.60 0.26 0.12 16 9 C 0.14 5.13 5.42 85.56 0.46 5.59 16 10 N -0.53 -23.53 4.62 -905.38 -4.18 -27.71 16 11 C 0.21 10.86 4.56 85.56 0.39 11.25 16 12 C -0.51 -29.07 8.44 25.60 0.22 -28.86 16 13 H 0.05 3.11 7.14 -2.91 -0.02 3.09 16 14 C 0.01 0.39 5.46 84.66 0.46 0.85 16 15 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 16 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.11 4.52 5.34 86.30 0.46 4.98 16 21 C -0.19 -7.35 3.94 -10.79 -0.04 -7.39 16 22 C -0.16 -5.08 9.99 30.62 0.31 -4.77 16 23 C -0.17 -5.57 10.26 30.62 0.31 -5.26 16 24 N -0.27 -10.08 11.75 -48.59 -0.57 -10.66 16 25 N -0.11 -3.79 12.42 37.02 0.46 -3.33 16 26 C -0.12 -1.99 9.46 22.38 0.21 -1.78 16 27 C -0.10 -1.21 9.69 22.25 0.22 -1.00 16 28 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 30 H 0.08 0.29 8.08 -2.38 -0.02 0.27 16 31 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 32 H 0.13 2.82 7.69 -2.91 -0.02 2.80 16 33 H 0.22 4.74 7.11 -2.91 -0.02 4.72 16 34 H 0.09 3.21 7.74 -2.39 -0.02 3.19 16 35 H 0.05 1.95 6.38 -2.39 -0.02 1.93 16 36 H -0.02 -1.19 6.14 -2.39 -0.01 -1.21 16 37 H 0.01 0.65 7.83 -2.38 -0.02 0.63 16 38 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 39 H 0.06 2.62 6.86 -2.38 -0.02 2.60 16 40 H 0.06 2.66 6.72 -2.39 -0.02 2.64 16 41 H 0.08 3.55 6.30 -2.39 -0.02 3.53 16 42 H 0.09 3.15 8.03 -2.39 -0.02 3.13 16 43 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 45 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.15 2.09 6.77 -2.91 -0.02 2.07 16 47 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -70.09 385.89 3.77 -66.33 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.97 Total: 19.48 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 5.44 Total: -28.14 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -4.68 Total: -104.38 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -70.09 3.77 -66.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906271033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.222 kcal (2) G-P(sol) polarization free energy of solvation -70.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds