Wall clock time and date at job start Tue Mar 31 2020 14:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38277 * 119.93330 * 2 1 4 4 C 1.38121 * 120.06694 * 180.02562 * 3 2 1 5 5 C 1.38828 * 119.93113 * 359.97438 * 4 3 2 6 6 N 1.40248 * 120.05977 * 179.97438 * 5 4 3 7 7 C 1.36115 * 125.93667 * 180.02562 * 6 5 4 8 8 C 1.35374 * 106.05062 * 180.02562 * 7 6 5 9 9 C 1.50700 * 126.73224 * 179.97438 * 8 7 6 10 10 N 1.46909 * 109.46922 * 95.00028 * 9 8 7 11 11 C 1.46843 * 110.99751 * 294.20817 * 10 9 8 12 12 C 1.53035 * 109.52170 * 174.16187 * 11 10 9 13 13 C 1.53121 * 109.27782 * 59.18222 * 12 11 10 14 14 C 1.53120 * 109.15766 * 302.34121 * 13 12 11 15 15 H 1.09004 * 109.50699 * 297.71600 * 14 13 12 16 16 C 1.50698 * 109.50242 * 177.59388 * 14 13 12 17 17 H 1.07999 * 120.00298 * 240.19727 * 16 14 13 18 18 C 1.37882 * 119.99923 * 60.19947 * 16 14 13 19 19 N 1.31513 * 119.99755 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00289 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46895 * 89.99954 * 20 18 16 22 22 H 1.48490 * 109.47506 * 210.00262 * 20 18 16 23 23 H 1.48505 * 109.47155 * 330.00917 * 20 18 16 24 24 C 1.46847 * 110.99892 * 170.00117 * 10 9 8 25 25 N 1.33774 * 106.53626 * 359.97438 * 8 7 6 26 26 N 1.28606 * 109.05943 * 0.02562 * 25 8 7 27 27 C 1.38821 * 119.87022 * 0.26135 * 5 4 3 28 28 C 1.38120 * 119.93059 * 359.46472 * 27 5 4 29 29 H 1.08995 * 109.47530 * 90.00446 * 1 2 3 30 30 H 1.08998 * 109.47070 * 210.00344 * 1 2 3 31 31 H 1.09004 * 109.47111 * 330.00220 * 1 2 3 32 32 H 1.08002 * 119.96615 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.03440 * 180.02562 * 4 3 2 34 34 H 1.07998 * 126.97806 * 359.77392 * 7 6 5 35 35 H 1.09001 * 109.46860 * 214.99387 * 9 8 7 36 36 H 1.08994 * 109.47496 * 335.00057 * 9 8 7 37 37 H 1.08999 * 109.46558 * 294.17659 * 11 10 9 38 38 H 1.09002 * 109.46687 * 54.14717 * 11 10 9 39 39 H 1.08997 * 109.50529 * 299.23992 * 12 11 10 40 40 H 1.09007 * 109.50283 * 179.11576 * 12 11 10 41 41 H 1.09004 * 109.52122 * 182.44323 * 13 12 11 42 42 H 1.09000 * 109.57970 * 62.27977 * 13 12 11 43 43 H 0.96997 * 119.99964 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.46053 * 305.85197 * 24 10 9 45 45 H 1.09001 * 109.46323 * 65.81584 * 24 10 9 46 46 H 1.07998 * 120.02976 * 179.74170 * 27 5 4 47 47 H 1.08004 * 119.96519 * 180.27622 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2015 -0.0005 5 6 4.2737 0.0000 -0.0005 6 7 5.6762 0.0002 -0.0016 7 6 6.4751 -1.1018 -0.0022 8 6 7.7481 -0.6413 -0.0026 9 6 9.0065 -1.4703 -0.0028 10 7 9.4815 -1.6391 -1.3827 11 6 8.5327 -2.4346 -2.1722 12 6 8.9847 -2.4671 -3.6339 13 6 10.3856 -3.0798 -3.7163 14 6 11.3441 -2.2611 -2.8471 15 1 11.4040 -1.2427 -3.2313 16 6 12.7124 -2.8918 -2.8755 17 1 13.1661 -3.2392 -1.9591 18 6 13.3852 -3.0254 -4.0716 19 7 12.8330 -2.6019 -5.1875 20 14 15.0816 -3.8066 -4.1069 21 1 14.9475 -5.2724 -4.3039 22 1 15.8704 -3.2272 -5.2236 23 1 15.7755 -3.5416 -2.8210 24 6 10.8236 -2.2345 -1.4082 25 7 7.6698 0.6942 -0.0028 26 7 6.4318 1.0423 -0.0020 27 6 3.5782 -1.2014 -0.0055 28 6 2.1971 -1.1982 0.0008 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6553 2.1327 0.0004 33 1 4.1166 2.1378 -0.0001 34 1 6.1579 -2.1342 0.0014 35 1 9.7732 -0.9671 0.5863 36 1 8.7978 -2.4479 0.4316 37 1 8.4968 -3.4511 -1.7805 38 1 7.5413 -1.9858 -2.1086 39 1 9.0076 -1.4521 -4.0305 40 1 8.2888 -3.0707 -4.2167 41 1 10.7293 -3.0653 -4.7506 42 1 10.3561 -4.1084 -3.3566 43 1 13.3064 -2.6956 -6.0289 44 1 11.4963 -1.6404 -0.7896 45 1 10.7770 -3.2519 -1.0199 46 1 4.1167 -2.1376 -0.0097 47 1 1.6554 -2.1326 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906313433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:47 Heat of formation + Delta-G solvation = 124.929921 kcal Electronic energy + Delta-G solvation = -26766.870626 eV Core-core repulsion = 23144.465025 eV Total energy + Delta-G solvation = -3622.405601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.46843 -39.87308 -38.20816 -35.38002 -34.01144 -32.30376 -31.86893 -31.57677 -30.68208 -29.70867 -27.38769 -26.30321 -24.92021 -23.60758 -23.46490 -22.10360 -21.51726 -21.33581 -20.42359 -18.59304 -18.46178 -16.68280 -16.28495 -16.00719 -15.74283 -15.38469 -15.05241 -14.67597 -14.47475 -14.25827 -14.08500 -14.05213 -13.90764 -13.28179 -12.83039 -12.79210 -12.72129 -12.41762 -12.28394 -12.16111 -11.80244 -11.74828 -11.44011 -11.37812 -10.91889 -10.88223 -10.76510 -10.64927 -10.61942 -10.10656 -9.81452 -9.56031 -9.45266 -9.31455 -9.03035 -8.71094 -8.67136 -8.26762 -7.65185 -5.93516 -3.99611 0.29455 0.79890 1.78408 2.11728 2.52862 3.22270 3.33428 3.40396 3.43506 4.06956 4.22739 4.31252 4.41760 4.44499 4.55800 4.65756 4.77180 4.84483 5.01225 5.05527 5.11324 5.14367 5.28685 5.36498 5.46162 5.47695 5.58098 5.69334 5.70821 5.80078 5.86397 5.99989 6.02065 6.07758 6.17614 6.23300 6.26824 6.41684 6.53543 6.67725 6.73109 6.77211 6.99537 7.24966 7.41478 7.67257 7.77817 7.82476 8.12991 8.21538 8.46640 8.51565 9.04567 9.64392 11.12571 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.002197 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.986812 B =12740.296017 C =13133.175331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.101 4.101 4 C -0.098 4.098 5 C 0.124 3.876 6 N -0.248 5.248 7 C -0.051 4.051 8 C 0.014 3.986 9 C 0.136 3.864 10 N -0.532 5.532 11 C 0.063 3.937 12 C -0.117 4.117 13 C -0.110 4.110 14 C 0.054 3.946 15 H 0.035 0.965 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.070 3.930 25 N -0.238 5.238 26 N -0.084 5.084 27 C -0.115 4.115 28 C -0.099 4.099 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.189 0.811 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.030 0.970 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.021 0.979 46 H 0.135 0.865 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.790 2.020 11.576 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.120 4.120 4 C -0.118 4.118 5 C 0.033 3.967 6 N -0.035 5.035 7 C -0.199 4.199 8 C -0.123 4.123 9 C 0.006 3.994 10 N -0.257 5.257 11 C -0.065 4.065 12 C -0.154 4.154 13 C -0.148 4.148 14 C 0.036 3.964 15 H 0.054 0.946 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.057 4.057 25 N -0.105 5.105 26 N -0.062 5.062 27 C -0.136 4.136 28 C -0.118 4.118 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.206 0.794 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.153 0.847 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.582 4.043 11.174 28.207 hybrid contribution 0.748 -2.461 0.198 2.580 sum -24.834 1.582 11.372 27.360 Atomic orbital electron populations 1.20832 0.90461 1.03209 1.02803 1.20110 0.96732 0.92991 0.98501 1.20992 0.92903 0.98305 0.99759 1.21009 0.94423 0.97068 0.99338 1.17683 0.77842 0.95821 1.05365 1.44611 1.05892 1.05739 1.47285 1.23495 0.90614 0.94383 1.11386 1.21988 0.94862 0.91280 1.04184 1.20297 0.91241 0.95582 0.92306 1.61927 1.03644 1.51331 1.08752 1.22054 0.94794 0.94164 0.95512 1.21664 0.99091 1.01133 0.93556 1.21652 0.91521 0.97067 1.04544 1.18671 0.92896 0.96860 0.88006 0.94647 1.21139 1.01195 1.39570 0.93313 0.92776 1.24943 0.97689 0.95545 0.95743 1.69896 1.37689 1.46911 0.98198 0.86624 0.84558 0.79320 0.77641 1.20852 1.21287 1.19949 1.22336 0.86297 0.95322 1.01727 1.75103 1.08295 1.12384 1.14729 1.78343 0.96433 1.11648 1.19799 1.20926 0.94840 0.96204 1.01629 1.20904 0.92692 0.98326 0.99889 0.90672 0.91180 0.91162 0.84658 0.83897 0.79398 0.88923 0.93464 0.95803 0.92858 0.92182 0.93665 0.89140 0.95137 0.93089 0.91895 0.96075 0.84712 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 10.01 36.01 0.36 -0.07 16 2 C -0.08 -0.51 5.88 -104.60 -0.62 -1.13 16 3 C -0.10 -0.71 9.69 -39.61 -0.38 -1.09 16 4 C -0.10 -0.93 9.62 -39.41 -0.38 -1.31 16 5 C 0.12 1.32 6.68 -83.57 -0.56 0.76 16 6 N -0.25 -3.32 3.56 -10.47 -0.04 -3.36 16 7 C -0.05 -0.65 9.70 -16.67 -0.16 -0.81 16 8 C 0.01 0.21 5.97 -82.77 -0.49 -0.28 16 9 C 0.14 2.12 5.53 -4.97 -0.03 2.09 16 10 N -0.53 -10.11 4.65 -236.11 -1.10 -11.20 16 11 C 0.06 1.12 5.29 -3.84 -0.02 1.10 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 14 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.63 11.36 55.43 0.63 -25.00 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.07 1.48 4.68 -3.84 -0.02 1.46 16 25 N -0.24 -4.24 12.39 33.29 0.41 -3.82 16 26 N -0.08 -1.37 12.42 60.35 0.75 -0.62 16 27 C -0.12 -0.93 9.46 -39.41 -0.37 -1.30 16 28 C -0.10 -0.64 9.69 -39.61 -0.38 -1.02 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.14 1.38 7.69 -52.49 -0.40 0.98 16 34 H 0.19 1.70 7.11 -52.49 -0.37 1.32 16 35 H 0.09 1.43 7.99 -51.93 -0.41 1.02 16 36 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.87 6.24 -51.93 -0.32 0.55 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.32 8.02 -51.93 -0.42 0.91 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.14 0.86 6.77 -52.49 -0.36 0.51 16 47 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -32.16 378.11 -9.83 -41.99 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.21 Total: -1.59 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -3.95 Total: -18.47 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.66 Total: -44.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.16 -9.83 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906313433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.916 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds