Wall clock time and date at job start Tue Mar 31 2020 14:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38277 * 119.93330 * 2 1 4 4 C 1.38121 * 120.06694 * 180.02562 * 3 2 1 5 5 C 1.38828 * 119.93113 * 359.97438 * 4 3 2 6 6 N 1.40248 * 120.05977 * 179.97438 * 5 4 3 7 7 C 1.36115 * 125.93667 * 180.02562 * 6 5 4 8 8 C 1.35374 * 106.05062 * 180.02562 * 7 6 5 9 9 C 1.50700 * 126.73224 * 179.97438 * 8 7 6 10 10 N 1.46909 * 109.46922 * 95.00028 * 9 8 7 11 11 C 1.46843 * 110.99751 * 294.20817 * 10 9 8 12 12 C 1.53035 * 109.52170 * 174.16187 * 11 10 9 13 13 C 1.53121 * 109.27782 * 59.18222 * 12 11 10 14 14 C 1.53120 * 109.15766 * 302.34121 * 13 12 11 15 15 H 1.09004 * 109.50699 * 297.71600 * 14 13 12 16 16 C 1.50698 * 109.50242 * 177.59388 * 14 13 12 17 17 H 1.07999 * 120.00298 * 240.19727 * 16 14 13 18 18 C 1.37882 * 119.99923 * 60.19947 * 16 14 13 19 19 N 1.31513 * 119.99755 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00289 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46895 * 89.99954 * 20 18 16 22 22 H 1.48490 * 109.47506 * 210.00262 * 20 18 16 23 23 H 1.48505 * 109.47155 * 330.00917 * 20 18 16 24 24 C 1.46847 * 110.99892 * 170.00117 * 10 9 8 25 25 N 1.33774 * 106.53626 * 359.97438 * 8 7 6 26 26 N 1.28606 * 109.05943 * 0.02562 * 25 8 7 27 27 C 1.38821 * 119.87022 * 0.26135 * 5 4 3 28 28 C 1.38120 * 119.93059 * 359.46472 * 27 5 4 29 29 H 1.08995 * 109.47530 * 90.00446 * 1 2 3 30 30 H 1.08998 * 109.47070 * 210.00344 * 1 2 3 31 31 H 1.09004 * 109.47111 * 330.00220 * 1 2 3 32 32 H 1.08002 * 119.96615 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.03440 * 180.02562 * 4 3 2 34 34 H 1.07998 * 126.97806 * 359.77392 * 7 6 5 35 35 H 1.09001 * 109.46860 * 214.99387 * 9 8 7 36 36 H 1.08994 * 109.47496 * 335.00057 * 9 8 7 37 37 H 1.08999 * 109.46558 * 294.17659 * 11 10 9 38 38 H 1.09002 * 109.46687 * 54.14717 * 11 10 9 39 39 H 1.08997 * 109.50529 * 299.23992 * 12 11 10 40 40 H 1.09007 * 109.50283 * 179.11576 * 12 11 10 41 41 H 1.09004 * 109.52122 * 182.44323 * 13 12 11 42 42 H 1.09000 * 109.57970 * 62.27977 * 13 12 11 43 43 H 0.96997 * 119.99964 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.46053 * 305.85197 * 24 10 9 45 45 H 1.09001 * 109.46323 * 65.81584 * 24 10 9 46 46 H 1.07998 * 120.02976 * 179.74170 * 27 5 4 47 47 H 1.08004 * 119.96519 * 180.27622 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2015 -0.0005 5 6 4.2737 0.0000 -0.0005 6 7 5.6762 0.0002 -0.0016 7 6 6.4751 -1.1018 -0.0022 8 6 7.7481 -0.6413 -0.0026 9 6 9.0065 -1.4703 -0.0028 10 7 9.4815 -1.6391 -1.3827 11 6 8.5327 -2.4346 -2.1722 12 6 8.9847 -2.4671 -3.6339 13 6 10.3856 -3.0798 -3.7163 14 6 11.3441 -2.2611 -2.8471 15 1 11.4040 -1.2427 -3.2313 16 6 12.7124 -2.8918 -2.8755 17 1 13.1661 -3.2392 -1.9591 18 6 13.3852 -3.0254 -4.0716 19 7 12.8330 -2.6019 -5.1875 20 14 15.0816 -3.8066 -4.1069 21 1 14.9475 -5.2724 -4.3039 22 1 15.8704 -3.2272 -5.2236 23 1 15.7755 -3.5416 -2.8210 24 6 10.8236 -2.2345 -1.4082 25 7 7.6698 0.6942 -0.0028 26 7 6.4318 1.0423 -0.0020 27 6 3.5782 -1.2014 -0.0055 28 6 2.1971 -1.1982 0.0008 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6553 2.1327 0.0004 33 1 4.1166 2.1378 -0.0001 34 1 6.1579 -2.1342 0.0014 35 1 9.7732 -0.9671 0.5863 36 1 8.7978 -2.4479 0.4316 37 1 8.4968 -3.4511 -1.7805 38 1 7.5413 -1.9858 -2.1086 39 1 9.0076 -1.4521 -4.0305 40 1 8.2888 -3.0707 -4.2167 41 1 10.7293 -3.0653 -4.7506 42 1 10.3561 -4.1084 -3.3566 43 1 13.3064 -2.6956 -6.0289 44 1 11.4963 -1.6404 -0.7896 45 1 10.7770 -3.2519 -1.0199 46 1 4.1167 -2.1376 -0.0097 47 1 1.6554 -2.1326 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906313433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:46 Heat of formation + Delta-G solvation = 105.923329 kcal Electronic energy + Delta-G solvation = -26767.694813 eV Core-core repulsion = 23144.465025 eV Total energy + Delta-G solvation = -3623.229789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.51138 -40.48227 -39.77630 -36.36574 -35.59347 -33.92499 -32.57803 -32.43993 -31.88552 -31.42368 -28.07081 -27.49931 -26.89980 -24.47752 -24.30205 -23.52446 -23.12475 -22.18262 -21.42723 -20.33805 -19.36461 -18.40486 -17.66562 -16.85749 -16.58673 -16.33617 -16.28902 -16.12435 -15.76471 -15.38095 -15.02816 -14.95302 -14.69054 -14.54756 -14.40212 -14.20093 -13.83391 -13.44948 -13.36821 -13.11533 -12.96409 -12.82575 -12.72619 -12.66004 -12.53456 -12.45486 -12.04139 -11.85611 -11.84583 -11.74504 -11.69453 -11.38442 -10.88837 -10.66341 -10.39657 -10.32850 -10.11508 -9.42437 -9.08865 -8.05789 -6.20040 -0.43699 0.24960 0.93640 1.25449 1.36937 1.42624 1.43764 1.53984 2.44789 2.63070 3.12424 3.21248 3.26782 3.51029 3.75208 3.85642 3.89509 3.98862 4.10553 4.16901 4.25800 4.28941 4.37460 4.41085 4.54101 4.60160 4.62331 4.70403 4.76894 4.82838 4.88968 4.89752 4.96234 4.98726 5.00221 5.10038 5.11065 5.20083 5.27390 5.31912 5.39063 5.52985 5.53707 5.60785 5.65719 5.91921 5.97449 6.15189 6.23122 6.33853 6.47757 6.93389 7.37964 7.47841 8.99103 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029908 B = 0.002197 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.986812 B =12740.296017 C =13133.175331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.105 4.105 4 C -0.114 4.114 5 C 0.083 3.917 6 N -0.238 5.238 7 C -0.033 4.033 8 C -0.009 4.009 9 C 0.141 3.859 10 N -0.553 5.553 11 C 0.070 3.930 12 C -0.111 4.111 13 C -0.101 4.101 14 C 0.051 3.949 15 H -0.013 1.013 16 C -0.532 4.532 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.918 5.918 20 Si 0.956 3.044 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.268 1.268 24 C 0.085 3.915 25 N -0.285 5.285 26 N -0.114 5.114 27 C -0.111 4.111 28 C -0.099 4.099 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.032 0.968 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.031 0.969 46 H 0.155 0.845 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.698 -0.313 12.872 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.134 4.134 5 C -0.007 4.007 6 N -0.025 5.025 7 C -0.181 4.181 8 C -0.147 4.147 9 C 0.012 3.988 10 N -0.278 5.278 11 C -0.057 4.057 12 C -0.149 4.149 13 C -0.139 4.139 14 C 0.032 3.968 15 H 0.006 0.994 16 C -0.571 4.571 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.782 3.218 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.042 4.042 25 N -0.151 5.151 26 N -0.091 5.091 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.173 0.827 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -28.521 1.739 12.488 31.184 hybrid contribution 1.447 -1.695 -0.208 2.238 sum -27.074 0.044 12.280 29.729 Atomic orbital electron populations 1.20917 0.88355 1.04402 1.03634 1.20519 0.98259 0.92585 0.96232 1.21255 0.91927 0.99866 0.99314 1.21082 0.95587 0.96465 1.00239 1.18099 0.76586 0.97374 1.08668 1.44840 1.06968 1.05322 1.45360 1.24027 0.89443 0.95776 1.08902 1.22048 0.95907 0.90727 1.06006 1.20273 0.91285 0.97113 0.90105 1.61765 1.02944 1.51726 1.11411 1.21994 0.95053 0.95375 0.93294 1.21577 0.97377 0.99716 0.96204 1.21436 0.93484 0.97087 1.01926 1.18599 0.93154 0.94101 0.90944 0.99441 1.21528 1.02492 1.39584 0.93470 0.92576 1.25772 1.01513 0.96119 0.95426 1.70059 1.39133 1.47916 0.98656 0.85582 0.79896 0.78618 0.77700 1.19903 1.21250 1.19209 1.21968 0.87772 0.95929 0.98536 1.75036 1.09429 1.14107 1.16511 1.78264 0.96334 1.12954 1.21578 1.21228 0.95621 0.95845 1.00497 1.21317 0.92142 0.99658 0.98644 0.89838 0.89757 0.90330 0.82756 0.85443 0.75233 0.89642 0.90201 0.93664 0.90870 0.94615 0.91062 0.92696 0.94958 0.93187 0.92471 0.95071 0.82738 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 10.01 71.24 0.71 0.29 16 2 C -0.08 -0.70 5.88 -19.85 -0.12 -0.81 16 3 C -0.11 -1.29 9.69 22.25 0.22 -1.08 16 4 C -0.11 -2.12 9.62 22.38 0.22 -1.90 16 5 C 0.08 1.66 6.68 38.07 0.25 1.92 16 6 N -0.24 -6.19 3.56 -187.04 -0.67 -6.85 16 7 C -0.03 -0.76 9.70 83.37 0.81 0.05 16 8 C -0.01 -0.26 5.97 41.60 0.25 -0.01 16 9 C 0.14 4.22 5.53 85.56 0.47 4.69 16 10 N -0.55 -20.68 4.65 -900.92 -4.19 -24.87 16 11 C 0.07 2.35 5.29 86.33 0.46 2.81 16 12 C -0.11 -4.42 6.09 30.65 0.19 -4.24 16 13 C -0.10 -4.92 5.03 30.67 0.15 -4.77 16 14 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 15 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 16 C -0.53 -29.91 8.56 25.60 0.22 -29.69 16 17 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 18 C 0.01 0.57 5.30 84.66 0.45 1.02 16 19 N -0.92 -54.77 11.36 21.45 0.24 -54.53 16 20 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.09 3.63 4.68 86.32 0.40 4.03 16 25 N -0.28 -10.42 12.39 -48.58 -0.60 -11.02 16 26 N -0.11 -3.79 12.42 37.02 0.46 -3.33 16 27 C -0.11 -1.46 9.46 22.38 0.21 -1.24 16 28 C -0.10 -0.89 9.69 22.25 0.22 -0.68 16 29 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.11 8.08 -2.39 -0.02 0.09 16 31 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 32 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.13 2.66 7.69 -2.91 -0.02 2.64 16 34 H 0.23 3.06 7.11 -2.91 -0.02 3.04 16 35 H 0.09 2.63 7.99 -2.39 -0.02 2.62 16 36 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 2.18 6.24 -2.39 -0.01 2.17 16 39 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.05 3.05 6.17 -2.38 -0.01 3.04 16 42 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.06 2.45 8.02 -2.38 -0.02 2.43 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.16 1.30 6.77 -2.91 -0.02 1.28 16 47 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -74.44 378.11 3.31 -71.12 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.96 Total: 10.00 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 5.08 Total: -26.96 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.75 Total: -100.60 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.44 3.31 -71.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906313433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.048 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds