Wall clock time and date at job start Tue Mar 31 2020 15:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.52999 * 109.47035 * 120.00399 * 2 1 3 5 5 N 1.46499 * 109.47255 * 64.99744 * 4 2 1 6 6 N 1.40105 * 119.99743 * 180.02562 * 5 4 2 7 7 C 1.29705 * 119.99911 * 180.02562 * 6 5 4 8 8 C 1.47535 * 120.00384 * 180.02562 * 7 6 5 9 9 C 1.36676 * 126.67633 * 185.51572 * 8 7 6 10 10 N 1.34744 * 108.04759 * 180.02562 * 9 8 7 11 11 C 1.46498 * 125.26900 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47393 * 124.99408 * 11 10 9 13 13 H 1.08000 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00196 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99950 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47325 * 89.99966 * 16 14 12 18 18 H 1.48499 * 109.47099 * 209.99883 * 16 14 12 19 19 H 1.48502 * 109.47009 * 329.99721 * 16 14 12 20 20 N 1.39825 * 109.46275 * 359.97438 * 10 9 8 21 21 C 1.31558 * 108.80586 * 359.70903 * 20 10 9 22 22 C 1.48271 * 126.48653 * 180.25917 * 21 20 10 23 23 C 1.39397 * 120.12600 * 45.00935 * 22 21 20 24 24 C 1.38002 * 119.86807 * 179.67589 * 23 22 21 25 25 C 1.38330 * 120.12608 * 0.62368 * 24 23 22 26 26 C 1.38325 * 120.25879 * 359.67055 * 25 24 23 27 27 C 1.38005 * 120.12581 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47023 * 300.00006 * 1 2 3 30 30 H 1.09000 * 109.46961 * 59.99664 * 1 2 3 31 31 H 1.09006 * 109.47125 * 239.99848 * 2 1 3 32 32 H 1.08998 * 109.46911 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46919 * 299.99906 * 3 2 1 34 34 H 1.08994 * 109.46787 * 60.00468 * 3 2 1 35 35 H 1.09002 * 109.46978 * 304.99750 * 4 2 1 36 36 H 1.09005 * 109.47054 * 184.99931 * 4 2 1 37 37 H 0.97000 * 119.99839 * 0.02562 * 5 4 2 38 38 H 1.07999 * 119.99878 * 0.27117 * 7 6 5 39 39 H 1.08003 * 125.97497 * 359.97124 * 9 8 7 40 40 H 1.09004 * 109.47070 * 244.99505 * 11 10 9 41 41 H 1.09003 * 109.47557 * 4.99027 * 11 10 9 42 42 H 0.97002 * 119.99917 * 179.97438 * 15 14 12 43 43 H 1.08003 * 120.06075 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.93827 * 180.33684 * 24 23 22 45 45 H 1.08004 * 119.86907 * 179.69974 * 25 24 23 46 46 H 1.08000 * 119.93906 * 180.02562 * 26 25 24 47 47 H 1.08003 * 120.06593 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 7 2.0091 -3.0011 2.2306 7 6 1.6663 -4.2510 2.1784 8 6 2.0414 -5.1652 3.2740 9 6 1.8459 -6.5173 3.3119 10 7 2.3283 -6.9762 4.4834 11 6 2.3121 -8.3761 4.9147 12 6 3.7118 -8.8093 5.2677 13 1 4.5313 -8.1113 5.1799 14 6 3.9458 -10.0961 5.7036 15 7 2.9476 -10.9456 5.8119 16 14 5.6806 -10.6328 6.1418 17 1 5.9333 -10.3647 7.5804 18 1 5.8315 -12.0859 5.8751 19 1 6.6562 -9.8745 5.3181 20 7 2.8476 -5.9094 5.2232 21 6 2.7015 -4.8012 4.5294 22 6 3.1212 -3.4405 4.9426 23 6 4.3777 -3.2384 5.5113 24 6 4.7656 -1.9686 5.8878 25 6 3.9051 -0.8996 5.7136 26 6 2.6547 -1.0951 5.1554 27 6 2.2584 -2.3594 4.7694 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6053 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 1.1488 -2.4664 0.4315 38 1 1.1098 -4.6233 1.3311 39 1 1.3847 -7.1136 2.5385 40 1 1.6685 -8.4798 5.7883 41 1 1.9313 -9.0009 4.1068 42 1 3.1124 -11.8511 6.1183 43 1 5.0482 -4.0732 5.6526 44 1 5.7409 -1.8099 6.3235 45 1 4.2111 0.0916 6.0141 46 1 1.9872 -0.2567 5.0214 47 1 1.2820 -2.5109 4.3333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916365543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:46 Heat of formation + Delta-G solvation = 128.088142 kcal Electronic energy + Delta-G solvation = -26650.186903 eV Core-core repulsion = 23027.918252 eV Total energy + Delta-G solvation = -3622.268650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25061 -38.45016 -37.55666 -35.56299 -33.75682 -32.27645 -31.47082 -30.52337 -30.04348 -29.07608 -27.50043 -26.87581 -24.97271 -23.59077 -22.48309 -22.17104 -21.25209 -20.55060 -19.71189 -18.93783 -16.88429 -16.63368 -16.21404 -15.99243 -15.54396 -15.15274 -14.85632 -14.59392 -14.27040 -13.99928 -13.88583 -13.59597 -13.32660 -13.13152 -12.95603 -12.72789 -12.61435 -12.42874 -12.27086 -12.13356 -11.89223 -11.56179 -11.36585 -11.14144 -10.99479 -10.97604 -10.91880 -10.86736 -10.66921 -10.28726 -10.18203 -9.79090 -9.52584 -8.98337 -8.69327 -8.55506 -8.47346 -7.94196 -6.93424 -6.26918 -4.32474 1.49912 1.80277 2.09863 2.92657 3.08950 3.23338 3.29307 3.33683 3.49817 3.73090 4.25862 4.30579 4.52623 4.59888 4.74513 4.90482 5.08206 5.19266 5.23154 5.26193 5.30733 5.32785 5.35957 5.43350 5.45276 5.51918 5.55715 5.72680 5.77147 5.80933 5.85164 5.88440 5.97273 6.04193 6.17270 6.20926 6.26921 6.40981 6.65107 6.80013 6.81488 6.83148 6.99803 7.04409 7.25386 7.35033 7.38163 7.65718 7.82626 7.90382 8.51757 8.75335 8.78438 9.33544 10.81479 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.002831 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.139424 B = 9886.909478 C =11078.987614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.170 3.830 5 N -0.674 5.674 6 N -0.236 5.236 7 C 0.117 3.883 8 C -0.212 4.212 9 C 0.080 3.920 10 N -0.323 5.323 11 C 0.254 3.746 12 C -0.529 4.529 13 H 0.069 0.931 14 C 0.063 3.937 15 N -0.895 5.895 16 Si 0.908 3.092 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.272 1.272 20 N -0.259 5.259 21 C 0.104 3.896 22 C 0.011 3.989 23 C -0.095 4.095 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.053 4.053 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.367 0.633 38 H 0.101 0.899 39 H 0.173 0.827 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.268 0.732 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 21.137 -9.977 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.201 4.201 4 C 0.046 3.954 5 N -0.413 5.413 6 N -0.043 5.043 7 C -0.095 4.095 8 C -0.228 4.228 9 C -0.072 4.072 10 N -0.102 5.102 11 C 0.137 3.863 12 C -0.568 4.568 13 H 0.088 0.912 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.081 5.081 21 C -0.064 4.064 22 C 0.009 3.991 23 C -0.114 4.114 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.150 4.150 27 C -0.072 4.072 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.205 0.795 38 H 0.118 0.882 39 H 0.190 0.810 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.275 21.108 -8.230 22.891 hybrid contribution -0.096 -0.921 -1.555 1.809 sum -3.371 20.187 -9.784 22.685 Atomic orbital electron populations 1.21836 0.94853 1.01857 1.01782 1.21343 0.96364 0.96705 0.98369 1.21747 1.01263 0.95026 1.02081 1.20918 0.98729 0.79155 0.96643 1.47917 1.65246 1.06964 1.21142 1.74403 1.15598 1.03289 1.10980 1.22980 0.99741 0.90223 0.96514 1.19068 1.15759 0.91443 0.96484 1.22421 0.99491 0.93909 0.91410 1.49225 1.40638 1.08995 1.11293 1.19810 0.99678 0.69509 0.97283 1.21230 0.92538 0.97193 1.45791 0.91238 1.24933 0.98095 0.96063 0.94895 1.69916 1.31157 1.05945 1.46280 0.86327 0.83525 0.77595 0.79087 1.20257 1.20983 1.19663 1.77502 1.18450 0.93027 1.19071 1.21830 0.99702 0.92188 0.92692 1.17656 0.93887 0.89110 0.98427 1.21243 0.95689 0.97146 0.97315 1.20938 0.99636 0.92676 1.01681 1.21056 0.94460 0.98388 1.00156 1.20879 0.96562 0.96663 1.00852 1.20949 0.99139 0.91382 0.95754 0.92677 0.92443 0.92775 0.90900 0.92352 0.92365 0.92315 0.92881 0.93053 0.79548 0.88172 0.80991 0.93472 0.92522 0.92289 0.86002 0.86486 0.86844 0.86805 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.07 37.16 0.34 -0.67 16 2 C -0.11 -0.79 2.96 -90.62 -0.27 -1.06 16 3 C -0.14 -0.89 9.19 37.16 0.34 -0.55 16 4 C 0.17 1.69 6.06 -4.04 -0.02 1.67 16 5 N -0.67 -7.86 6.36 -10.61 -0.07 -7.93 16 6 N -0.24 -3.47 7.58 32.16 0.24 -3.23 16 7 C 0.12 1.74 10.89 -14.66 -0.16 1.58 16 8 C -0.21 -3.80 6.23 -103.37 -0.64 -4.44 16 9 C 0.08 1.46 11.35 -16.84 -0.19 1.27 16 10 N -0.32 -7.17 3.64 -62.23 -0.23 -7.40 16 11 C 0.25 6.25 6.22 -5.19 -0.03 6.22 16 12 C -0.53 -14.44 9.21 -34.44 -0.32 -14.76 16 13 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 16 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 N -0.26 -5.95 12.34 34.56 0.43 -5.52 16 21 C 0.10 2.08 6.85 -80.56 -0.55 1.52 16 22 C 0.01 0.20 5.46 -104.91 -0.57 -0.37 16 23 C -0.09 -1.59 9.78 -39.24 -0.38 -1.98 16 24 C -0.13 -1.83 10.03 -39.63 -0.40 -2.23 16 25 C -0.12 -1.54 10.04 -39.52 -0.40 -1.94 16 26 C -0.13 -1.73 10.03 -39.63 -0.40 -2.13 16 27 C -0.05 -0.82 7.54 -39.24 -0.30 -1.11 16 28 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.37 3.71 7.61 -182.59 -1.39 2.32 16 38 H 0.10 1.21 8.02 -52.49 -0.42 0.79 16 39 H 0.17 2.43 8.06 -52.48 -0.42 2.01 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 46 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.12 1.89 6.98 -52.48 -0.37 1.52 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -30.28 397.98 -10.40 -40.68 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.43 Total: 2.77 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -4.05 Total: -17.36 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 1.11 Total: -48.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.28 -10.40 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916365543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.764 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds