Wall clock time and date at job start Tue Mar 31 2020 15:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.52999 * 109.47035 * 120.00399 * 2 1 3 5 5 N 1.46499 * 109.47255 * 64.99744 * 4 2 1 6 6 N 1.40105 * 119.99743 * 180.02562 * 5 4 2 7 7 C 1.29705 * 119.99911 * 180.02562 * 6 5 4 8 8 C 1.47535 * 120.00384 * 180.02562 * 7 6 5 9 9 C 1.36676 * 126.67633 * 185.51572 * 8 7 6 10 10 N 1.34744 * 108.04759 * 180.02562 * 9 8 7 11 11 C 1.46498 * 125.26900 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47393 * 124.99408 * 11 10 9 13 13 H 1.08000 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00196 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99950 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47325 * 89.99966 * 16 14 12 18 18 H 1.48499 * 109.47099 * 209.99883 * 16 14 12 19 19 H 1.48502 * 109.47009 * 329.99721 * 16 14 12 20 20 N 1.39825 * 109.46275 * 359.97438 * 10 9 8 21 21 C 1.31558 * 108.80586 * 359.70903 * 20 10 9 22 22 C 1.48271 * 126.48653 * 180.25917 * 21 20 10 23 23 C 1.39397 * 120.12600 * 45.00935 * 22 21 20 24 24 C 1.38002 * 119.86807 * 179.67589 * 23 22 21 25 25 C 1.38330 * 120.12608 * 0.62368 * 24 23 22 26 26 C 1.38325 * 120.25879 * 359.67055 * 25 24 23 27 27 C 1.38005 * 120.12581 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47023 * 300.00006 * 1 2 3 30 30 H 1.09000 * 109.46961 * 59.99664 * 1 2 3 31 31 H 1.09006 * 109.47125 * 239.99848 * 2 1 3 32 32 H 1.08998 * 109.46911 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46919 * 299.99906 * 3 2 1 34 34 H 1.08994 * 109.46787 * 60.00468 * 3 2 1 35 35 H 1.09002 * 109.46978 * 304.99750 * 4 2 1 36 36 H 1.09005 * 109.47054 * 184.99931 * 4 2 1 37 37 H 0.97000 * 119.99839 * 0.02562 * 5 4 2 38 38 H 1.07999 * 119.99878 * 0.27117 * 7 6 5 39 39 H 1.08003 * 125.97497 * 359.97124 * 9 8 7 40 40 H 1.09004 * 109.47070 * 244.99505 * 11 10 9 41 41 H 1.09003 * 109.47557 * 4.99027 * 11 10 9 42 42 H 0.97002 * 119.99917 * 179.97438 * 15 14 12 43 43 H 1.08003 * 120.06075 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.93827 * 180.33684 * 24 23 22 45 45 H 1.08004 * 119.86907 * 179.69974 * 25 24 23 46 46 H 1.08000 * 119.93906 * 180.02562 * 26 25 24 47 47 H 1.08003 * 120.06593 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 7 2.0091 -3.0011 2.2306 7 6 1.6663 -4.2510 2.1784 8 6 2.0414 -5.1652 3.2740 9 6 1.8459 -6.5173 3.3119 10 7 2.3283 -6.9762 4.4834 11 6 2.3121 -8.3761 4.9147 12 6 3.7118 -8.8093 5.2677 13 1 4.5313 -8.1113 5.1799 14 6 3.9458 -10.0961 5.7036 15 7 2.9476 -10.9456 5.8119 16 14 5.6806 -10.6328 6.1418 17 1 5.9333 -10.3647 7.5804 18 1 5.8315 -12.0859 5.8751 19 1 6.6562 -9.8745 5.3181 20 7 2.8476 -5.9094 5.2232 21 6 2.7015 -4.8012 4.5294 22 6 3.1212 -3.4405 4.9426 23 6 4.3777 -3.2384 5.5113 24 6 4.7656 -1.9686 5.8878 25 6 3.9051 -0.8996 5.7136 26 6 2.6547 -1.0951 5.1554 27 6 2.2584 -2.3594 4.7694 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6053 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 1.1488 -2.4664 0.4315 38 1 1.1098 -4.6233 1.3311 39 1 1.3847 -7.1136 2.5385 40 1 1.6685 -8.4798 5.7883 41 1 1.9313 -9.0009 4.1068 42 1 3.1124 -11.8511 6.1183 43 1 5.0482 -4.0732 5.6526 44 1 5.7409 -1.8099 6.3235 45 1 4.2111 0.0916 6.0141 46 1 1.9872 -0.2567 5.0214 47 1 1.2820 -2.5109 4.3333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916365543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:45 Heat of formation + Delta-G solvation = 112.707349 kcal Electronic energy + Delta-G solvation = -26650.853864 eV Core-core repulsion = 23027.918252 eV Total energy + Delta-G solvation = -3622.935611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74633 -39.63972 -38.39934 -36.53357 -35.60758 -33.88965 -32.59427 -31.68400 -31.51402 -30.37270 -28.56202 -28.01183 -26.01848 -25.22307 -23.81951 -23.33768 -22.57237 -21.34278 -21.01602 -20.26844 -18.65149 -18.13496 -17.38048 -17.13357 -16.70834 -16.38006 -16.08988 -15.96809 -15.63575 -15.42064 -14.74838 -14.60124 -14.41019 -14.34287 -14.25559 -14.04233 -13.74057 -13.62383 -13.44906 -13.33374 -12.99620 -12.88386 -12.75909 -12.57078 -12.30708 -12.05847 -11.93998 -11.91476 -11.82962 -11.77161 -11.57650 -11.40727 -10.78277 -10.76098 -10.43105 -9.87612 -9.65658 -9.24298 -8.39253 -8.11531 -6.48042 0.28344 0.64044 0.80197 1.35884 1.37110 1.46722 1.50800 1.81549 2.20139 2.33659 2.44811 2.97318 3.06807 3.60994 3.85095 3.89931 4.02532 4.16233 4.17897 4.22099 4.24035 4.34756 4.42286 4.59916 4.66464 4.70406 4.77882 4.79396 4.84171 4.88138 4.94459 4.97117 5.02803 5.06674 5.10502 5.13556 5.25960 5.27396 5.41675 5.45639 5.51247 5.55628 5.65669 5.69904 5.77872 5.81551 5.91621 6.20653 6.24010 6.46447 6.62843 6.99393 7.21696 7.74203 8.72989 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.002831 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.139424 B = 9886.909478 C =11078.987614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.142 4.142 4 C 0.169 3.831 5 N -0.665 5.665 6 N -0.244 5.244 7 C 0.103 3.897 8 C -0.209 4.209 9 C 0.079 3.921 10 N -0.350 5.350 11 C 0.270 3.730 12 C -0.547 4.547 13 H 0.049 0.951 14 C 0.020 3.980 15 N -0.919 5.919 16 Si 0.968 3.032 17 H -0.274 1.274 18 H -0.270 1.270 19 H -0.273 1.273 20 N -0.315 5.315 21 C 0.100 3.900 22 C -0.018 4.018 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.055 4.055 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.378 0.622 38 H 0.132 0.868 39 H 0.211 0.789 40 H 0.020 0.980 41 H 0.063 0.937 42 H 0.273 0.727 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.153 0.847 46 H 0.146 0.854 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 24.001 -11.348 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.199 4.199 4 C 0.045 3.955 5 N -0.405 5.405 6 N -0.051 5.051 7 C -0.109 4.109 8 C -0.223 4.223 9 C -0.072 4.072 10 N -0.129 5.129 11 C 0.152 3.848 12 C -0.585 4.585 13 H 0.067 0.933 14 C -0.180 4.180 15 N -0.557 5.557 16 Si 0.792 3.208 17 H -0.200 1.200 18 H -0.194 1.194 19 H -0.198 1.198 20 N -0.136 5.136 21 C -0.068 4.068 22 C -0.020 4.020 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.143 4.143 27 C -0.075 4.075 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.216 0.784 38 H 0.149 0.851 39 H 0.227 0.773 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.164 0.836 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.262 23.991 -9.624 26.054 hybrid contribution -0.119 -1.547 -1.177 1.948 sum -3.381 22.444 -10.801 25.136 Atomic orbital electron populations 1.21819 0.94333 1.01670 1.02297 1.21286 0.96660 0.97068 0.96905 1.21742 1.01204 0.94189 1.02807 1.21053 0.98103 0.78281 0.98082 1.48025 1.64673 1.07183 1.20609 1.74298 1.14845 1.03687 1.12268 1.22888 1.01227 0.90068 0.96678 1.19420 1.14503 0.91886 0.96497 1.23063 0.98756 0.94581 0.90792 1.48925 1.42998 1.08067 1.12905 1.19349 0.97760 0.71352 0.96375 1.21372 0.93338 0.97288 1.46497 0.93286 1.25689 1.01808 0.95965 0.94556 1.69985 1.32816 1.06326 1.46621 0.85404 0.78995 0.77729 0.78650 1.20001 1.19424 1.19826 1.77400 1.20942 0.94199 1.21034 1.22436 0.98657 0.92492 0.93222 1.17813 0.95015 0.88687 1.00507 1.21244 0.95549 0.98082 0.98959 1.21231 1.00991 0.91706 1.00884 1.21495 0.93559 0.99592 0.98187 1.21251 0.97291 0.96388 0.99384 1.20938 0.98547 0.91826 0.96175 0.93212 0.92622 0.91599 0.90766 0.92482 0.91250 0.92013 0.92988 0.94224 0.78385 0.85072 0.77266 0.96176 0.91967 0.91814 0.88274 0.84126 0.82912 0.83650 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.07 71.98 0.65 -0.95 16 2 C -0.10 -1.20 2.96 -10.79 -0.03 -1.23 16 3 C -0.14 -1.37 9.19 71.98 0.66 -0.71 16 4 C 0.17 3.00 6.06 86.38 0.52 3.52 16 5 N -0.67 -14.20 6.36 -187.49 -1.19 -15.39 16 6 N -0.24 -6.86 7.58 -52.15 -0.40 -7.26 16 7 C 0.10 2.96 10.89 87.46 0.95 3.91 16 8 C -0.21 -7.58 6.23 -19.06 -0.12 -7.70 16 9 C 0.08 2.92 11.35 83.88 0.95 3.87 16 10 N -0.35 -16.38 3.64 -350.81 -1.28 -17.66 16 11 C 0.27 14.01 6.22 85.63 0.53 14.54 16 12 C -0.55 -31.22 9.21 25.60 0.24 -30.98 16 13 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 14 C 0.02 1.14 5.46 84.65 0.46 1.60 16 15 N -0.92 -52.24 13.29 21.45 0.28 -51.96 16 16 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 N -0.31 -15.41 12.34 -44.57 -0.55 -15.96 16 21 C 0.10 4.20 6.85 43.99 0.30 4.50 16 22 C -0.02 -0.67 5.46 -20.05 -0.11 -0.78 16 23 C -0.12 -4.13 9.78 22.49 0.22 -3.91 16 24 C -0.13 -3.44 10.03 22.24 0.22 -3.22 16 25 C -0.11 -2.42 10.04 22.31 0.22 -2.20 16 26 C -0.13 -2.95 10.03 22.24 0.22 -2.73 16 27 C -0.06 -1.67 7.54 22.49 0.17 -1.50 16 28 H 0.05 0.61 7.18 -2.39 -0.02 0.59 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.38 6.73 7.61 -213.32 -1.62 5.11 16 38 H 0.13 2.87 8.02 -2.91 -0.02 2.85 16 39 H 0.21 5.78 8.06 -2.91 -0.02 5.75 16 40 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.06 3.09 8.05 -2.39 -0.02 3.07 16 42 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.10 3.77 8.06 -2.91 -0.02 3.75 16 44 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 47 H 0.11 3.54 6.98 -2.91 -0.02 3.52 16 Total: -1.00 -69.07 397.98 4.30 -64.77 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.67 Total: 21.08 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 6.07 Total: -23.98 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.13 Total: -108.22 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -69.07 4.30 -64.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916365543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.475 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds