Wall clock time and date at job start Tue Mar 31 2020 14:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99879 * 2 1 4 4 C 1.38752 * 120.05642 * 0.25040 * 3 2 1 5 5 C 1.38126 * 119.93942 * 180.32033 * 4 3 2 6 6 C 1.38284 * 120.05569 * 359.68155 * 5 4 3 7 7 C 1.38245 * 120.11683 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.04995 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02272 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47131 * 220.00044 * 9 8 7 11 11 N 1.46898 * 109.47684 * 340.00440 * 9 8 7 12 12 C 1.46900 * 110.99947 * 275.00188 * 11 9 8 13 13 C 1.52998 * 109.47196 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47096 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00338 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99775 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00089 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47231 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46644 * 120.00099 * 19 17 15 22 22 H 1.48493 * 109.47218 * 240.00106 * 19 17 15 23 23 C 1.50707 * 109.46939 * 100.00843 * 9 8 7 24 24 C 1.38227 * 119.62059 * 125.01917 * 23 9 8 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 9 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 304.99347 * 23 9 8 29 29 H 1.08996 * 109.47146 * 60.00179 * 1 2 3 30 30 H 1.09002 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47023 * 300.00309 * 1 2 3 32 32 H 1.07998 * 120.03363 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97115 * 179.70400 * 5 4 3 34 34 H 1.08006 * 119.94136 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.97711 * 180.02562 * 7 6 5 36 36 H 1.00894 * 111.00064 * 151.04712 * 11 9 8 37 37 H 1.09005 * 109.46816 * 300.00068 * 12 11 9 38 38 H 1.08997 * 109.47246 * 59.99346 * 12 11 9 39 39 H 1.08996 * 109.46987 * 299.99726 * 13 12 11 40 40 H 1.09000 * 109.47041 * 60.00126 * 13 12 11 41 41 H 1.09005 * 109.46983 * 300.00395 * 14 13 12 42 42 H 1.08997 * 109.47179 * 59.99735 * 14 13 12 43 43 H 0.97000 * 120.00469 * 180.02562 * 18 17 15 44 44 H 1.07997 * 120.41915 * 359.97438 * 24 23 9 45 45 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 46 46 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 47 47 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9209 3.6047 -0.0015 6 6 3.3019 3.6757 -0.0067 7 6 4.0560 2.5170 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0221 0.0001 10 1 3.7901 -0.7138 -0.6567 11 7 5.6098 0.3209 -0.4792 12 6 5.6694 0.2843 -1.9466 13 6 7.0938 0.6003 -2.4072 14 6 7.1560 0.5616 -3.9354 15 6 8.5587 0.8734 -4.3891 16 1 9.3289 1.0791 -3.6604 17 6 8.8591 0.8962 -5.7346 18 7 7.9213 0.6462 -6.6220 19 14 10.5979 1.2834 -6.2970 20 1 11.4590 1.5263 -5.1118 21 1 11.1347 0.1356 -7.0715 22 1 10.5823 2.4954 -7.1549 23 6 4.3262 -0.5298 1.4006 24 6 3.9340 -1.8330 1.6426 25 6 4.0097 -2.3325 2.9335 26 6 4.4697 -1.4958 3.9391 27 6 4.8446 -0.2042 3.6215 28 7 4.7635 0.2360 2.3809 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2128 2.3204 0.0098 33 1 1.3341 4.5113 -0.0022 34 1 3.7923 4.6380 -0.0116 35 1 5.1345 2.5751 -0.0096 36 1 6.2839 -0.3111 -0.0741 37 1 5.3854 -0.7080 -2.2971 38 1 4.9826 1.0247 -2.3567 39 1 7.3772 1.5927 -2.0567 40 1 7.7808 -0.1399 -1.9971 41 1 6.8726 -0.4310 -4.2856 42 1 6.4688 1.3015 -4.3459 43 1 8.1326 0.6618 -7.5686 44 1 3.5767 -2.4553 0.8355 45 1 3.7136 -3.3480 3.1516 46 1 4.5384 -1.8504 4.9569 47 1 5.2078 0.4524 4.3982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924942908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:27 Heat of formation + Delta-G solvation = 18.756279 kcal Electronic energy + Delta-G solvation = -27186.363128 eV Core-core repulsion = 23527.060741 eV Total energy + Delta-G solvation = -3659.302387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68318 -39.82038 -37.56312 -36.36159 -33.95613 -32.54020 -32.22242 -30.80080 -30.23357 -29.95510 -27.43112 -26.69509 -24.95652 -23.60456 -22.79185 -22.33846 -21.87282 -20.55079 -20.02999 -18.04609 -17.05368 -16.66332 -16.25527 -15.95465 -15.85428 -15.71724 -15.47306 -14.86678 -14.50251 -14.30419 -14.12364 -14.05740 -13.73902 -13.35704 -13.23413 -12.94356 -12.86432 -12.45973 -12.20492 -12.04569 -11.83902 -11.50264 -11.46512 -11.20341 -11.11317 -10.82073 -10.77207 -10.50788 -10.42657 -9.95870 -9.64807 -9.46324 -9.33181 -9.12014 -8.96293 -8.65233 -8.29630 -8.15567 -8.05563 -5.94589 -3.96253 0.97597 1.20932 1.49955 1.58893 3.24819 3.34846 3.42109 3.46906 3.69931 3.87488 4.23305 4.28809 4.51667 4.72288 4.73900 4.79646 4.95831 4.98261 4.99890 5.01308 5.07461 5.24034 5.28118 5.40605 5.41320 5.46212 5.50835 5.58540 5.62969 5.85159 5.92645 5.97109 6.03773 6.06317 6.15676 6.36286 6.39137 6.55052 6.59882 6.73486 6.78544 6.85585 7.00729 7.20152 7.36586 7.40884 7.65657 7.75201 7.90314 7.99921 8.06494 8.49839 9.11336 9.67496 11.16900 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.003033 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.219844 B = 9229.304182 C =10368.554099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.124 3.876 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.164 4.164 7 C -0.031 4.031 8 C -0.095 4.095 9 C 0.187 3.813 10 H 0.068 0.932 11 N -0.672 5.672 12 C 0.059 3.941 13 C -0.105 4.105 14 C 0.022 3.978 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.139 3.861 24 C -0.159 4.159 25 C -0.078 4.078 26 C -0.179 4.179 27 C 0.096 3.904 28 N -0.453 5.453 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.342 0.658 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 -2.632 21.086 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.079 3.921 4 C -0.237 4.237 5 C -0.103 4.103 6 C -0.182 4.182 7 C -0.049 4.049 8 C -0.097 4.097 9 C 0.077 3.923 10 H 0.086 0.914 11 N -0.303 5.303 12 C -0.070 4.070 13 C -0.143 4.143 14 C -0.015 4.015 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.001 3.999 24 C -0.179 4.179 25 C -0.105 4.105 26 C -0.199 4.199 27 C -0.061 4.061 28 N -0.161 5.161 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.956 -1.307 20.725 26.188 hybrid contribution 0.190 -1.523 -0.358 1.576 sum -15.765 -2.829 20.367 25.911 Atomic orbital electron populations 1.22989 0.78942 1.03541 1.01119 1.86056 1.20885 1.27137 1.88893 1.18869 0.91712 0.84117 0.97401 1.21043 0.99429 0.92423 1.10756 1.20883 0.94863 0.96603 0.97992 1.21143 0.93721 0.98769 1.04578 1.21052 1.01430 0.89893 0.92518 1.18932 0.89043 0.95576 1.06138 1.19017 0.90649 0.93263 0.89385 0.91421 1.60510 1.03461 1.57573 1.08775 1.22227 1.00271 0.99482 0.84983 1.21608 0.92441 1.00695 0.99555 1.19064 0.96966 0.97060 0.88459 1.21300 0.95491 1.47007 0.91668 0.92623 1.25029 0.97047 0.95520 0.96964 1.69977 1.32521 1.49982 1.01139 0.86556 0.84994 0.77887 0.78693 1.19718 1.21113 1.21045 1.21118 0.93914 0.89982 0.94916 1.21992 1.01384 0.96633 0.97933 1.21523 0.96413 0.99844 0.92675 1.22132 1.01617 0.95802 1.00353 1.22803 0.95815 0.93837 0.93671 1.67519 1.11884 1.36953 0.99774 0.92731 0.88569 0.93056 0.86044 0.86365 0.86062 0.83517 0.83966 0.95630 0.91217 0.92446 0.93696 0.96854 0.96547 0.93151 0.84957 0.85059 0.85122 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.96 9.73 -19.43 -0.19 -4.15 16 3 C 0.12 1.72 6.65 -39.22 -0.26 1.46 16 4 C -0.22 -2.67 9.04 -39.43 -0.36 -3.03 16 5 C -0.09 -1.03 10.04 -39.61 -0.40 -1.42 16 6 C -0.16 -2.16 10.04 -39.56 -0.40 -2.56 16 7 C -0.03 -0.46 9.32 -39.60 -0.37 -0.83 16 8 C -0.10 -1.42 4.64 -104.47 -0.48 -1.90 16 9 C 0.19 2.70 2.21 -70.01 -0.15 2.55 16 10 H 0.07 1.00 7.23 -51.93 -0.38 0.62 16 11 N -0.67 -10.40 4.91 -109.19 -0.54 -10.94 16 12 C 0.06 1.05 5.47 -3.82 -0.02 1.03 16 13 C -0.10 -2.21 5.41 -26.73 -0.14 -2.36 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 C 0.14 1.85 5.40 -82.58 -0.45 1.41 16 24 C -0.16 -1.79 9.71 -39.44 -0.38 -2.17 16 25 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 26 C -0.18 -1.60 10.11 -39.44 -0.40 -2.00 16 27 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 28 N -0.45 -6.16 10.01 -9.47 -0.09 -6.25 16 29 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 32 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.15 2.31 7.14 -52.49 -0.37 1.94 16 36 H 0.34 5.16 8.35 -39.29 -0.33 4.83 16 37 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 38 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 1.32 7.95 -52.49 -0.42 0.90 16 45 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 47 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -33.06 392.94 -10.38 -43.44 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.23 Total: 3.81 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.97 Total: -22.17 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.11 Total: -43.87 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.19 Total: -4.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.06 -10.38 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.195 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds