Wall clock time and date at job start Tue Mar 31 2020 14:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38758 * 120.05922 * 359.72826 * 3 2 1 5 5 C 1.38121 * 119.94303 * 179.69478 * 4 3 2 6 6 C 1.38284 * 120.05670 * 0.60266 * 5 4 3 7 7 C 1.38245 * 120.11162 * 359.67148 * 6 5 4 8 8 C 1.38173 * 120.05607 * 0.02881 * 7 6 5 9 9 C 1.50698 * 120.02790 * 179.97438 * 8 7 6 10 10 H 1.08992 * 109.47154 * 145.01724 * 9 8 7 11 11 N 1.46903 * 109.47270 * 25.01629 * 9 8 7 12 12 C 1.46900 * 110.99930 * 155.00323 * 11 9 8 13 13 C 1.52992 * 109.46873 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.47069 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99703 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99555 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00364 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99528 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47773 * 59.99589 * 19 17 15 21 21 H 1.48499 * 109.47168 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47149 * 299.99506 * 19 17 15 23 23 C 1.50703 * 109.46663 * 265.01875 * 9 8 7 24 24 C 1.38228 * 119.61865 * 125.00175 * 23 9 8 25 25 C 1.38627 * 119.16453 * 179.97438 * 24 23 9 26 26 C 1.38675 * 118.41879 * 359.97438 * 25 24 23 27 27 C 1.38184 * 119.16076 * 359.97438 * 26 25 24 28 28 N 1.31846 * 119.61862 * 304.72244 * 23 9 8 29 29 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.02200 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.96674 * 180.29445 * 5 4 3 34 34 H 1.08003 * 119.94493 * 179.69558 * 6 5 4 35 35 H 1.08000 * 119.97218 * 179.97438 * 7 6 5 36 36 H 1.00902 * 110.99692 * 31.04418 * 11 9 8 37 37 H 1.09002 * 109.46702 * 300.00207 * 12 11 9 38 38 H 1.08993 * 109.47247 * 59.99811 * 12 11 9 39 39 H 1.09002 * 109.47556 * 299.99599 * 13 12 11 40 40 H 1.09004 * 109.47447 * 60.00267 * 13 12 11 41 41 H 1.08995 * 109.46792 * 299.99871 * 14 13 12 42 42 H 1.09002 * 109.47141 * 59.99917 * 14 13 12 43 43 H 0.96998 * 120.00015 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.42087 * 359.97438 * 24 23 9 45 45 H 1.07996 * 120.79136 * 180.02562 * 25 24 23 46 46 H 1.07997 * 120.41733 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.61637 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 -0.0057 5 6 1.9208 3.6048 0.0007 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5173 0.0001 8 6 3.4311 1.2849 0.0000 9 6 4.2537 0.0223 -0.0007 10 1 3.7468 -0.7419 0.5884 11 7 5.5728 0.2969 0.5846 12 6 6.1654 -0.9254 1.1439 13 6 7.5349 -0.5999 1.7434 14 6 8.1519 -1.8729 2.3265 15 6 9.5011 -1.5525 2.9165 16 1 9.8807 -0.5421 2.8789 17 6 10.2512 -2.5495 3.5032 18 7 9.7892 -3.7799 3.5485 19 14 11.9233 -2.1522 4.2351 20 1 11.7651 -1.1415 5.3116 21 1 12.5222 -3.3876 4.8009 22 1 12.8118 -1.6114 3.1751 23 6 4.4240 -0.4655 -1.4164 24 6 5.6943 -0.6849 -1.9152 25 6 5.8401 -1.1341 -3.2186 26 6 4.6974 -1.3472 -3.9748 27 6 3.4603 -1.1071 -3.4079 28 7 3.3594 -0.6832 -2.1631 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3203 -0.0106 33 1 1.3338 4.5114 0.0011 34 1 3.7921 4.6382 0.0002 35 1 5.1343 2.5754 -0.0007 36 1 5.5144 1.0229 1.2830 37 1 5.5134 -1.3220 1.9221 38 1 6.2812 -1.6673 0.3539 39 1 8.1871 -0.2030 0.9654 40 1 7.4187 0.1419 2.5336 41 1 7.4996 -2.2693 3.1045 42 1 8.2681 -2.6151 1.5367 43 1 10.3171 -4.4813 3.9610 44 1 6.5625 -0.5087 -1.2973 45 1 6.8201 -1.3145 -3.6348 46 1 4.7734 -1.6973 -4.9936 47 1 2.5656 -1.2702 -3.9904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924942914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:30 Heat of formation + Delta-G solvation = 22.495472 kcal Electronic energy + Delta-G solvation = -27212.834483 eV Core-core repulsion = 23553.694240 eV Total energy + Delta-G solvation = -3659.140243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67552 -39.72731 -37.64151 -36.51983 -33.98725 -32.57797 -31.93636 -30.79050 -30.21384 -30.06568 -27.45958 -26.66143 -25.05592 -23.31552 -22.81599 -22.46976 -21.81481 -20.60485 -20.06404 -18.12048 -16.91356 -16.49357 -16.42739 -16.10316 -15.74436 -15.57320 -15.18492 -14.87459 -14.57645 -14.49533 -14.30039 -13.89334 -13.74420 -13.46495 -13.17833 -12.93799 -12.62519 -12.54289 -12.19117 -12.10004 -11.72176 -11.63163 -11.47387 -11.22394 -11.15929 -10.89704 -10.81596 -10.55404 -10.49964 -9.70599 -9.68629 -9.36570 -9.28856 -9.06048 -8.90598 -8.77204 -8.32712 -8.29836 -8.15164 -5.97434 -3.99675 1.16330 1.32936 1.42944 1.47345 3.26702 3.35065 3.39350 3.41859 3.67890 3.93082 4.05849 4.47788 4.57828 4.70734 4.83964 4.90555 4.94686 4.98427 5.03365 5.06948 5.21473 5.24593 5.35898 5.37951 5.38343 5.45651 5.52083 5.64923 5.71862 5.78345 5.89988 5.96248 6.00824 6.22629 6.29010 6.31299 6.32695 6.40235 6.45856 6.71168 6.72802 6.77293 6.87698 7.13979 7.26992 7.36819 7.57416 7.70488 7.85281 8.02912 8.18040 8.45629 9.07461 9.64239 11.13950 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.002933 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.128061 B = 9544.613862 C =10548.390439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.295 6.295 3 C 0.156 3.844 4 C -0.217 4.217 5 C -0.082 4.082 6 C -0.164 4.164 7 C -0.068 4.068 8 C -0.112 4.112 9 C 0.186 3.814 10 H 0.075 0.925 11 N -0.685 5.685 12 C 0.053 3.947 13 C -0.106 4.106 14 C 0.022 3.978 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.145 3.855 24 C -0.142 4.142 25 C -0.084 4.084 26 C -0.182 4.182 27 C 0.089 3.911 28 N -0.469 5.469 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.348 0.652 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.154 0.846 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 11.149 -12.665 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.207 6.207 3 C 0.109 3.891 4 C -0.236 4.236 5 C -0.100 4.100 6 C -0.182 4.182 7 C -0.086 4.086 8 C -0.114 4.114 9 C 0.075 3.925 10 H 0.093 0.907 11 N -0.318 5.318 12 C -0.075 4.075 13 C -0.144 4.144 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.006 3.994 24 C -0.162 4.162 25 C -0.110 4.110 26 C -0.202 4.202 27 C -0.069 4.069 28 N -0.178 5.178 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.171 0.829 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.585 10.847 -12.830 25.804 hybrid contribution 0.926 -0.067 0.701 1.163 sum -18.659 10.779 -12.129 24.728 Atomic orbital electron populations 1.22998 0.79134 1.03681 1.00756 1.86203 1.20518 1.26189 1.87802 1.18742 0.91485 0.84385 0.94487 1.21157 0.99776 0.92394 1.10288 1.20904 0.94750 0.96779 0.97586 1.21019 0.93814 0.98372 1.04975 1.20997 1.00799 0.90642 0.96138 1.19027 0.90301 0.94857 1.07175 1.18772 0.88804 0.93730 0.91161 0.90745 1.60530 1.20802 1.11344 1.39111 1.22299 0.96855 0.90734 0.97607 1.21624 0.93039 1.00768 0.98956 1.19058 0.95152 0.91607 0.95704 1.21215 1.02547 0.94819 1.37184 0.92704 1.25023 0.98134 0.95085 0.96241 1.69953 1.38021 1.00650 1.44951 0.86668 0.84320 0.77562 0.79500 1.20268 1.21349 1.20231 1.20908 0.88705 0.94653 0.95129 1.22248 0.99833 0.98288 0.95830 1.21652 0.99006 0.96125 0.94207 1.22081 0.94022 1.02927 1.01167 1.22586 0.96901 0.96009 0.91383 1.67351 1.33548 1.11235 1.05663 0.92930 0.93156 0.88502 0.85742 0.86196 0.85994 0.84235 0.83158 0.95243 0.91169 0.92496 0.93468 0.96785 0.96603 0.92988 0.82863 0.85084 0.85470 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -3.75 9.20 -19.44 -0.18 -3.93 16 3 C 0.16 2.00 6.40 -39.22 -0.25 1.75 16 4 C -0.22 -2.35 9.04 -39.43 -0.36 -2.70 16 5 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 6 C -0.16 -1.73 10.04 -39.56 -0.40 -2.13 16 7 C -0.07 -0.81 8.85 -39.60 -0.35 -1.17 16 8 C -0.11 -1.51 4.78 -104.47 -0.50 -2.01 16 9 C 0.19 2.69 2.43 -70.01 -0.17 2.52 16 10 H 0.07 1.19 7.35 -51.93 -0.38 0.81 16 11 N -0.69 -9.82 4.43 -109.19 -0.48 -10.31 16 12 C 0.05 0.91 4.82 -3.83 -0.02 0.89 16 13 C -0.11 -2.12 5.41 -26.73 -0.14 -2.27 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.14 2.16 6.11 -82.59 -0.50 1.65 16 24 C -0.14 -2.05 8.45 -39.44 -0.33 -2.38 16 25 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 26 C -0.18 -2.04 10.11 -39.44 -0.40 -2.44 16 27 C 0.09 1.08 11.18 -17.55 -0.20 0.89 16 28 N -0.47 -6.84 9.37 -9.47 -0.09 -6.93 16 29 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.07 6.30 -52.48 -0.33 0.73 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.14 1.60 6.97 -52.49 -0.37 1.24 16 36 H 0.35 4.67 7.27 -39.29 -0.29 4.39 16 37 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 38 H 0.07 1.24 6.65 -51.93 -0.35 0.89 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.15 2.31 5.92 -52.48 -0.31 2.00 16 45 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -32.34 385.24 -10.21 -42.55 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.00 Total: 4.37 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.98 Total: -21.88 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.16 Total: -43.63 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.18 Total: -3.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.34 -10.21 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924942914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.044 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds