Wall clock time and date at job start Tue Mar 31 2020 14:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99734 * 126.70081 * 3 2 1 5 5 C 1.37592 * 120.00456 * 179.97438 * 4 3 2 6 6 C 1.39747 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.47689 * 120.00532 * 180.02562 * 6 5 4 8 8 O 1.21575 * 119.99864 * 22.45919 * 7 6 5 9 9 N 1.34774 * 119.99771 * 202.45819 * 7 6 5 10 10 C 1.46499 * 120.00151 * 4.81671 * 9 7 6 11 11 C 1.46502 * 119.99626 * 184.81846 * 9 7 6 12 12 H 1.08993 * 110.21612 * 1.93170 * 11 9 7 13 13 C 1.50122 * 110.36736 * 123.94907 * 11 9 7 14 14 C 1.54847 * 110.81470 * 216.71563 * 13 11 9 15 15 C 1.54908 * 110.14047 * 321.13405 * 14 13 11 16 16 N 1.43413 * 116.14278 * 318.64514 * 15 14 13 17 17 C 1.36934 * 120.51929 * 271.56478 * 16 15 14 18 18 H 1.08006 * 120.00180 * 338.22341 * 17 16 15 19 19 C 1.38812 * 119.99830 * 158.22011 * 17 16 15 20 20 N 1.31614 * 119.99967 * 338.35555 * 19 17 16 21 21 Si 1.86799 * 119.99966 * 158.35868 * 19 17 16 22 22 H 1.48495 * 109.47397 * 59.99812 * 21 19 17 23 23 H 1.48496 * 109.47309 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46902 * 299.99875 * 21 19 17 25 25 C 1.50168 * 118.94410 * 91.46053 * 16 15 14 26 26 C 1.46244 * 107.58594 * 289.70583 * 25 16 15 27 27 C 1.39747 * 119.99021 * 0.26869 * 6 5 4 28 28 C 1.37599 * 119.99578 * 359.47021 * 27 6 5 29 29 H 4.51952 * 14.06341 * 0.02562 * 4 2 1 30 30 H 1.08005 * 119.99367 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00258 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47125 * 264.19468 * 10 9 7 33 33 H 1.08997 * 109.47171 * 24.18927 * 10 9 7 34 34 H 1.09000 * 109.47306 * 144.19300 * 10 9 7 35 35 H 1.08997 * 109.21491 * 337.06120 * 13 11 9 36 36 H 1.09005 * 109.21262 * 96.37622 * 13 11 9 37 37 H 1.08996 * 109.35899 * 81.33753 * 14 13 11 38 38 H 1.09005 * 109.35937 * 201.06909 * 14 13 11 39 39 H 1.08996 * 108.15441 * 80.35667 * 15 14 13 40 40 H 1.09001 * 108.15907 * 197.13391 * 15 14 13 41 41 H 0.97006 * 119.99903 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.84567 * 170.16879 * 25 16 15 43 43 H 1.08997 * 109.84681 * 49.24298 * 25 16 15 44 44 H 1.08997 * 108.52022 * 179.61995 * 26 25 16 45 45 H 1.09004 * 108.52041 * 297.29385 * 26 25 16 46 46 H 1.07999 * 119.99978 * 179.72894 * 27 6 5 47 47 H 1.08005 * 120.00146 * 180.27770 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3042 0.7241 -0.9701 5 6 4.6801 0.7252 -0.9700 6 6 5.3793 0.0023 0.0003 7 6 6.8562 0.0039 0.0010 8 8 7.4633 0.9088 -0.5381 9 7 7.5308 -0.9978 0.5992 10 6 6.8032 -2.1408 1.1562 11 6 8.9919 -0.9435 0.6926 12 1 9.3626 -0.0141 0.2605 13 6 9.4287 -1.0617 2.1239 14 6 10.6606 -0.1647 2.3991 15 6 11.6277 -0.2010 1.1896 16 7 11.8307 -1.4837 0.5811 17 6 12.8132 -2.3217 1.0366 18 1 13.6498 -1.9222 1.5907 19 6 12.7340 -3.6848 0.7861 20 7 11.5716 -4.2365 0.5092 21 14 14.2771 -4.7360 0.8423 22 1 14.8826 -4.6545 2.1957 23 1 13.9261 -6.1470 0.5406 24 1 15.2495 -4.2419 -0.1656 25 6 10.9471 -1.8939 -0.5617 26 6 9.6112 -2.1412 -0.0206 27 6 4.6808 -0.7262 0.9669 28 6 3.3049 -0.7228 0.9697 29 1 -1.0500 0.0000 0.0008 30 1 2.7638 1.2831 -1.7198 31 1 5.2198 1.2841 -1.7201 32 1 6.6373 -1.9817 2.2217 33 1 5.8431 -2.2418 0.6502 34 1 7.3877 -3.0493 1.0111 35 1 8.6100 -0.7562 2.7753 36 1 9.6864 -2.0995 2.3358 37 1 10.3307 0.8604 2.5673 38 1 11.1806 -0.5271 3.2860 39 1 11.2451 0.4787 0.4283 40 1 12.5975 0.1723 1.5188 41 1 11.5162 -5.1891 0.3346 42 1 11.3345 -2.8034 -1.0209 43 1 10.9045 -1.0949 -1.3018 44 1 8.9546 -2.4340 -0.8399 45 1 9.6716 -2.9689 0.6861 46 1 5.2210 -1.2885 1.7142 47 1 2.7650 -1.2823 1.7194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948665957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:00 Heat of formation + Delta-G solvation = 102.645925 kcal Electronic energy + Delta-G solvation = -27861.729959 eV Core-core repulsion = 24206.065300 eV Total energy + Delta-G solvation = -3655.664659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.60290 -38.88809 -37.51658 -35.42239 -34.15102 -32.88996 -31.66166 -31.08733 -30.64594 -30.06855 -27.12454 -26.20682 -24.87167 -23.40979 -23.07907 -22.75452 -20.37154 -19.68897 -19.30000 -18.58479 -17.20299 -16.75740 -16.41272 -15.89151 -15.41174 -14.99759 -14.82718 -14.57153 -14.16884 -13.86747 -13.79799 -13.66933 -13.39727 -13.21749 -12.94596 -12.77177 -12.51119 -12.10108 -11.88921 -11.75666 -11.46631 -11.36757 -11.21951 -11.15523 -10.77957 -10.72416 -10.66143 -10.30025 -10.16212 -9.98344 -9.78045 -9.55710 -9.45051 -9.29657 -9.22015 -8.79107 -8.49558 -8.20000 -6.73854 -5.80229 -3.15676 0.35597 1.11907 2.38911 2.40603 3.13843 3.23926 3.39089 3.45046 3.47907 3.78155 3.89560 4.50244 4.51828 4.62103 4.67361 5.00836 5.19030 5.25121 5.29386 5.33889 5.38746 5.46629 5.55669 5.66647 5.72681 5.76633 5.81207 5.88076 6.03025 6.11938 6.13946 6.19153 6.27758 6.31736 6.49713 6.53204 6.58286 6.63612 6.87342 6.90959 6.94164 7.06322 7.12870 7.16241 7.22591 7.50588 7.70096 7.73172 7.91619 8.35430 8.41887 9.18658 9.87506 10.40483 11.27633 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002706 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.785935 B =10345.782029 C =10718.735095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 C 0.024 3.976 4 C -0.105 4.105 5 C -0.062 4.062 6 C -0.116 4.116 7 C 0.551 3.449 8 O -0.539 6.539 9 N -0.594 5.594 10 C 0.058 3.942 11 C 0.141 3.859 12 H 0.099 0.901 13 C -0.112 4.112 14 C -0.140 4.140 15 C 0.153 3.847 16 N -0.588 5.588 17 C -0.245 4.245 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.167 3.833 26 C -0.133 4.133 27 C -0.107 4.107 28 C -0.106 4.106 29 H 0.225 0.775 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.252 0.748 42 H 0.094 0.906 43 H 0.009 0.991 44 H 0.031 0.969 45 H 0.104 0.896 46 H 0.158 0.842 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.403 5.567 0.657 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.023 3.977 4 C -0.123 4.123 5 C -0.080 4.080 6 C -0.119 4.119 7 C 0.339 3.661 8 O -0.417 6.417 9 N -0.325 5.325 10 C -0.084 4.084 11 C 0.039 3.961 12 H 0.117 0.883 13 C -0.150 4.150 14 C -0.182 4.182 15 C 0.024 3.976 16 N -0.309 5.309 17 C -0.374 4.374 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.729 3.271 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.213 1.213 25 C 0.043 3.957 26 C -0.172 4.172 27 C -0.125 4.125 28 C -0.124 4.124 29 H 0.241 0.759 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.112 0.888 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.122 0.878 46 H 0.175 0.825 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.042 5.836 0.329 19.919 hybrid contribution 0.353 -0.792 0.260 0.905 sum -18.689 5.044 0.589 19.367 Atomic orbital electron populations 1.24908 0.95770 0.99174 0.99242 1.20069 0.92044 1.01444 1.01395 1.16184 0.86601 0.98430 0.96437 1.21139 0.93746 0.99134 0.98295 1.21190 0.93360 0.96169 0.97326 1.20189 0.93643 1.00117 0.97948 1.18268 0.86698 0.82345 0.78783 1.90767 1.69652 1.36477 1.44823 1.47954 1.08087 1.20033 1.56405 1.22446 0.97920 0.90119 0.97935 1.20694 0.76046 1.01827 0.97499 0.88342 1.21747 0.96602 1.02089 0.94595 1.22831 0.96945 0.97118 1.01282 1.20443 0.95885 0.88670 0.92570 1.44275 1.37652 1.15779 1.33199 1.19186 0.98429 0.87849 1.31971 0.91470 1.24823 0.96358 0.96387 1.02156 1.69967 1.21699 1.10585 1.52439 0.86418 0.83469 0.79279 0.77919 1.21150 1.21821 1.21262 1.20124 0.88756 0.98594 0.88238 1.21333 0.97389 0.97800 1.00723 1.22253 0.94197 0.97202 0.98830 1.21167 0.93846 0.99157 0.98184 0.75857 0.85048 0.84246 0.92217 0.89844 0.90141 0.94260 0.90378 0.93691 0.92758 0.95166 0.94807 0.93789 0.88835 0.97337 0.95061 0.87832 0.82502 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 19.25 29.55 0.57 -0.73 16 2 C -0.15 -1.46 13.23 -38.84 -0.51 -1.97 16 3 C 0.02 0.25 5.73 -106.87 -0.61 -0.36 16 4 C -0.11 -1.09 9.73 -39.27 -0.38 -1.47 16 5 C -0.06 -0.74 9.57 -39.25 -0.38 -1.12 16 6 C -0.12 -1.53 5.57 -104.91 -0.58 -2.11 16 7 C 0.55 9.14 7.51 -12.40 -0.09 9.05 16 8 O -0.54 -10.78 15.92 5.30 0.08 -10.70 16 9 N -0.59 -9.54 2.64 -177.04 -0.47 -10.00 16 10 C 0.06 0.72 7.91 59.85 0.47 1.20 16 11 C 0.14 2.66 2.30 -69.60 -0.16 2.50 16 12 H 0.10 2.08 5.12 -51.93 -0.27 1.81 16 13 C -0.11 -2.09 4.83 -27.19 -0.13 -2.22 16 14 C -0.14 -2.67 6.41 -24.75 -0.16 -2.83 16 15 C 0.15 3.26 5.17 -4.67 -0.02 3.24 16 16 N -0.59 -14.26 2.61 -175.09 -0.46 -14.71 16 17 C -0.24 -6.47 9.62 -15.06 -0.14 -6.62 16 18 H 0.07 1.78 7.90 -52.48 -0.41 1.36 16 19 C 0.00 0.01 4.87 -17.43 -0.08 -0.08 16 20 N -0.90 -24.05 9.52 55.49 0.53 -23.53 16 21 Si 0.90 21.17 29.61 -169.99 -5.03 16.14 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.17 3.90 5.24 -5.20 -0.03 3.88 16 26 C -0.13 -2.79 3.81 -30.18 -0.11 -2.91 16 27 C -0.11 -1.14 7.53 -39.25 -0.30 -1.43 16 28 C -0.11 -1.02 9.73 -39.26 -0.38 -1.41 16 29 H 0.22 0.77 7.80 -54.09 -0.42 0.35 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.14 1.66 7.80 -52.49 -0.41 1.25 16 32 H 0.06 0.63 7.15 -51.93 -0.37 0.26 16 33 H 0.08 0.87 4.94 -51.93 -0.26 0.61 16 34 H 0.08 1.09 7.23 -51.93 -0.38 0.71 16 35 H 0.04 0.66 7.79 -51.93 -0.40 0.25 16 36 H 0.08 1.65 6.82 -51.93 -0.35 1.30 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.63 6.89 -51.93 -0.36 0.27 16 40 H 0.03 0.71 7.98 -51.93 -0.41 0.30 16 41 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 43 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 44 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 45 H 0.10 2.41 5.22 -51.93 -0.27 2.14 16 46 H 0.16 1.44 4.16 -52.49 -0.22 1.22 16 47 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -30.10 369.28 -9.33 -39.43 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.51 Total: 3.20 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.04 Total: -5.39 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.40 Total: -48.24 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.10 -9.33 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948665957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.077 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds