Wall clock time and date at job start Tue Mar 31 2020 14:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99734 * 126.70081 * 3 2 1 5 5 C 1.37592 * 120.00456 * 179.97438 * 4 3 2 6 6 C 1.39747 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.47689 * 120.00532 * 180.02562 * 6 5 4 8 8 O 1.21575 * 119.99864 * 22.45919 * 7 6 5 9 9 N 1.34774 * 119.99771 * 202.45819 * 7 6 5 10 10 C 1.46499 * 120.00151 * 4.81671 * 9 7 6 11 11 C 1.46502 * 119.99626 * 184.81846 * 9 7 6 12 12 H 1.08993 * 110.21612 * 1.93170 * 11 9 7 13 13 C 1.50122 * 110.36736 * 123.94907 * 11 9 7 14 14 C 1.54847 * 110.81470 * 216.71563 * 13 11 9 15 15 C 1.54908 * 110.14047 * 321.13405 * 14 13 11 16 16 N 1.43413 * 116.14278 * 318.64514 * 15 14 13 17 17 C 1.36934 * 120.51929 * 271.56478 * 16 15 14 18 18 H 1.08006 * 120.00180 * 338.22341 * 17 16 15 19 19 C 1.38812 * 119.99830 * 158.22011 * 17 16 15 20 20 N 1.31614 * 119.99967 * 338.35555 * 19 17 16 21 21 Si 1.86799 * 119.99966 * 158.35868 * 19 17 16 22 22 H 1.48495 * 109.47397 * 59.99812 * 21 19 17 23 23 H 1.48496 * 109.47309 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46902 * 299.99875 * 21 19 17 25 25 C 1.50168 * 118.94410 * 91.46053 * 16 15 14 26 26 C 1.46244 * 107.58594 * 289.70583 * 25 16 15 27 27 C 1.39747 * 119.99021 * 0.26869 * 6 5 4 28 28 C 1.37599 * 119.99578 * 359.47021 * 27 6 5 29 29 H 4.51952 * 14.06341 * 0.02562 * 4 2 1 30 30 H 1.08005 * 119.99367 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.00258 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47125 * 264.19468 * 10 9 7 33 33 H 1.08997 * 109.47171 * 24.18927 * 10 9 7 34 34 H 1.09000 * 109.47306 * 144.19300 * 10 9 7 35 35 H 1.08997 * 109.21491 * 337.06120 * 13 11 9 36 36 H 1.09005 * 109.21262 * 96.37622 * 13 11 9 37 37 H 1.08996 * 109.35899 * 81.33753 * 14 13 11 38 38 H 1.09005 * 109.35937 * 201.06909 * 14 13 11 39 39 H 1.08996 * 108.15441 * 80.35667 * 15 14 13 40 40 H 1.09001 * 108.15907 * 197.13391 * 15 14 13 41 41 H 0.97006 * 119.99903 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.84567 * 170.16879 * 25 16 15 43 43 H 1.08997 * 109.84681 * 49.24298 * 25 16 15 44 44 H 1.08997 * 108.52022 * 179.61995 * 26 25 16 45 45 H 1.09004 * 108.52041 * 297.29385 * 26 25 16 46 46 H 1.07999 * 119.99978 * 179.72894 * 27 6 5 47 47 H 1.08005 * 120.00146 * 180.27770 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3042 0.7241 -0.9701 5 6 4.6801 0.7252 -0.9700 6 6 5.3793 0.0023 0.0003 7 6 6.8562 0.0039 0.0010 8 8 7.4633 0.9088 -0.5381 9 7 7.5308 -0.9978 0.5992 10 6 6.8032 -2.1408 1.1562 11 6 8.9919 -0.9435 0.6926 12 1 9.3626 -0.0141 0.2605 13 6 9.4287 -1.0617 2.1239 14 6 10.6606 -0.1647 2.3991 15 6 11.6277 -0.2010 1.1896 16 7 11.8307 -1.4837 0.5811 17 6 12.8132 -2.3217 1.0366 18 1 13.6498 -1.9222 1.5907 19 6 12.7340 -3.6848 0.7861 20 7 11.5716 -4.2365 0.5092 21 14 14.2771 -4.7360 0.8423 22 1 14.8826 -4.6545 2.1957 23 1 13.9261 -6.1470 0.5406 24 1 15.2495 -4.2419 -0.1656 25 6 10.9471 -1.8939 -0.5617 26 6 9.6112 -2.1412 -0.0206 27 6 4.6808 -0.7262 0.9669 28 6 3.3049 -0.7228 0.9697 29 1 -1.0500 0.0000 0.0008 30 1 2.7638 1.2831 -1.7198 31 1 5.2198 1.2841 -1.7201 32 1 6.6373 -1.9817 2.2217 33 1 5.8431 -2.2418 0.6502 34 1 7.3877 -3.0493 1.0111 35 1 8.6100 -0.7562 2.7753 36 1 9.6864 -2.0995 2.3358 37 1 10.3307 0.8604 2.5673 38 1 11.1806 -0.5271 3.2860 39 1 11.2451 0.4787 0.4283 40 1 12.5975 0.1723 1.5188 41 1 11.5162 -5.1891 0.3346 42 1 11.3345 -2.8034 -1.0209 43 1 10.9045 -1.0949 -1.3018 44 1 8.9546 -2.4340 -0.8399 45 1 9.6716 -2.9689 0.6861 46 1 5.2210 -1.2885 1.7142 47 1 2.7650 -1.2823 1.7194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948665957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:59 Heat of formation + Delta-G solvation = 88.218944 kcal Electronic energy + Delta-G solvation = -27862.355559 eV Core-core repulsion = 24206.065300 eV Total energy + Delta-G solvation = -3656.290259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77404 -40.05330 -38.97417 -36.87731 -35.10215 -34.39477 -33.10619 -32.48020 -31.99531 -31.12727 -28.27585 -27.92610 -26.21341 -24.92342 -24.66088 -23.61185 -21.82718 -21.21610 -20.24209 -19.86430 -18.61980 -18.32725 -17.62852 -16.90333 -16.74062 -16.46611 -16.06653 -15.70205 -15.59281 -15.38349 -15.34198 -14.84592 -14.66716 -14.50518 -14.16066 -14.02997 -13.65083 -13.50502 -13.42306 -13.20621 -13.02216 -12.77437 -12.59737 -12.57734 -12.24487 -12.05787 -11.99511 -11.81750 -11.68258 -11.65336 -11.38138 -11.19557 -11.04608 -10.87400 -10.44665 -10.03747 -9.70783 -9.49867 -8.68938 -7.81717 -5.19369 -0.49852 0.31975 1.48386 1.49719 1.53163 1.58433 1.77266 1.93157 2.23795 2.56297 2.95780 3.27580 3.31409 3.47112 3.58579 3.81745 3.89931 3.97911 4.13332 4.16882 4.25549 4.31492 4.44490 4.47738 4.56003 4.57235 4.61129 4.69554 4.81371 4.85087 4.91287 4.93007 4.96228 5.05403 5.17896 5.21301 5.26367 5.29285 5.34276 5.35377 5.36267 5.50546 5.60300 5.69770 5.70231 5.78707 6.04117 6.40510 6.43080 6.56603 7.08234 7.17863 7.90721 8.42787 9.23506 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002706 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.785935 B =10345.782029 C =10718.735095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.205 4.205 3 C 0.026 3.974 4 C -0.107 4.107 5 C -0.070 4.070 6 C -0.139 4.139 7 C 0.548 3.452 8 O -0.584 6.584 9 N -0.596 5.596 10 C 0.054 3.946 11 C 0.154 3.846 12 H 0.077 0.923 13 C -0.101 4.101 14 C -0.134 4.134 15 C 0.149 3.851 16 N -0.599 5.599 17 C -0.260 4.260 18 H 0.063 0.937 19 C -0.040 4.040 20 N -0.914 5.914 21 Si 0.956 3.044 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.170 3.830 26 C -0.116 4.116 27 C -0.098 4.098 28 C -0.104 4.104 29 H 0.261 0.739 30 H 0.148 0.852 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.248 0.752 42 H 0.066 0.934 43 H 0.009 0.991 44 H 0.029 0.971 45 H 0.084 0.916 46 H 0.174 0.826 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.322 5.492 1.894 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.205 4.205 3 C 0.026 3.974 4 C -0.125 4.125 5 C -0.089 4.089 6 C -0.142 4.142 7 C 0.339 3.661 8 O -0.466 6.466 9 N -0.325 5.325 10 C -0.087 4.087 11 C 0.051 3.949 12 H 0.095 0.905 13 C -0.139 4.139 14 C -0.175 4.175 15 C 0.021 3.979 16 N -0.321 5.321 17 C -0.390 4.390 18 H 0.081 0.919 19 C -0.236 4.236 20 N -0.559 5.559 21 Si 0.786 3.214 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.215 1.215 25 C 0.046 3.954 26 C -0.156 4.156 27 C -0.116 4.116 28 C -0.121 4.121 29 H 0.278 0.722 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.027 0.973 44 H 0.048 0.952 45 H 0.102 0.898 46 H 0.191 0.809 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.980 5.758 1.586 22.777 hybrid contribution 1.104 -0.728 -0.165 1.333 sum -20.876 5.029 1.421 21.520 Atomic orbital electron populations 1.25844 0.96510 0.96211 0.96434 1.20268 0.92454 1.03940 1.03886 1.16428 0.87572 0.97453 0.95929 1.21291 0.92958 0.99341 0.98913 1.21199 0.94176 0.96303 0.97229 1.19977 0.91417 1.02715 1.00085 1.18814 0.88150 0.81538 0.77645 1.90731 1.70867 1.38184 1.46786 1.47949 1.06961 1.21097 1.56542 1.22717 0.98219 0.88114 0.99669 1.20268 0.78046 0.99433 0.97105 0.90506 1.21582 0.97173 1.00412 0.94736 1.22735 0.96454 0.98577 0.99724 1.20534 0.96584 0.87272 0.93488 1.44344 1.37760 1.16359 1.33675 1.19351 0.99020 0.88419 1.32195 0.91928 1.25429 0.98542 0.97276 1.02382 1.70097 1.22730 1.10356 1.52762 0.85518 0.80574 0.77583 0.77740 1.20693 1.22046 1.21473 1.20005 0.89888 0.97237 0.88306 1.21064 0.96238 0.98140 1.00119 1.22358 0.94670 0.96442 0.98143 1.21449 0.93403 0.98860 0.98424 0.72246 0.83393 0.85154 0.89547 0.87541 0.91436 0.91811 0.92922 0.91404 0.92998 0.95050 0.94852 0.94227 0.91563 0.97291 0.95206 0.89782 0.80943 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 19.25 74.32 1.43 -0.03 16 2 C -0.21 -3.40 13.23 30.02 0.40 -3.01 16 3 C 0.03 0.50 5.73 -21.32 -0.12 0.37 16 4 C -0.11 -2.09 9.73 22.47 0.22 -1.87 16 5 C -0.07 -1.68 9.57 22.48 0.22 -1.47 16 6 C -0.14 -3.58 5.57 -20.05 -0.11 -3.69 16 7 C 0.55 18.31 7.51 86.74 0.65 18.97 16 8 O -0.58 -24.16 15.92 -3.95 -0.06 -24.22 16 9 N -0.60 -18.93 2.64 -832.31 -2.20 -21.13 16 10 C 0.05 1.25 7.91 127.77 1.01 2.26 16 11 C 0.15 5.88 2.30 43.91 0.10 5.98 16 12 H 0.08 3.31 5.12 -2.39 -0.01 3.30 16 13 C -0.10 -3.70 4.83 30.30 0.15 -3.55 16 14 C -0.13 -5.00 6.41 31.88 0.20 -4.80 16 15 C 0.15 6.42 5.17 87.60 0.45 6.87 16 16 N -0.60 -29.76 2.61 -707.87 -1.85 -31.61 16 17 C -0.26 -13.98 9.62 84.03 0.81 -13.17 16 18 H 0.06 3.36 7.90 -2.91 -0.02 3.33 16 19 C -0.04 -2.15 4.87 84.86 0.41 -1.73 16 20 N -0.91 -49.77 9.52 21.65 0.21 -49.56 16 21 Si 0.96 44.03 29.61 68.60 2.03 46.07 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 C 0.17 8.24 5.24 83.58 0.44 8.67 16 26 C -0.12 -5.02 3.81 28.36 0.11 -4.91 16 27 C -0.10 -1.88 7.53 22.48 0.17 -1.71 16 28 C -0.10 -1.73 9.73 22.48 0.22 -1.51 16 29 H 0.26 0.43 7.80 -4.42 -0.03 0.40 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.13 3.25 7.80 -2.91 -0.02 3.23 16 32 H 0.09 1.57 7.15 -2.39 -0.02 1.55 16 33 H 0.11 2.00 4.94 -2.39 -0.01 1.98 16 34 H 0.07 1.78 7.23 -2.39 -0.02 1.76 16 35 H 0.06 2.02 7.79 -2.39 -0.02 2.00 16 36 H 0.05 2.23 6.82 -2.38 -0.02 2.21 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.03 1.33 6.89 -2.39 -0.02 1.31 16 40 H 0.03 1.41 7.98 -2.39 -0.02 1.39 16 41 H 0.25 13.30 8.31 -92.70 -0.77 12.52 16 42 H 0.07 3.57 5.99 -2.39 -0.01 3.55 16 43 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 44 H 0.03 1.25 8.02 -2.39 -0.02 1.24 16 45 H 0.08 4.02 5.22 -2.39 -0.01 4.01 16 46 H 0.17 2.65 4.16 -2.91 -0.01 2.64 16 47 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -67.02 369.28 5.86 -61.16 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.98 Total: 17.63 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 6.75 Total: 1.68 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.84 Total: -102.31 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.02 5.86 -61.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948665957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.380 kcal (2) G-P(sol) polarization free energy of solvation -67.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds