Wall clock time and date at job start Tue Mar 31 2020 14:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39714 * 120.00172 * 24.15215 * 3 2 1 5 5 C 1.37600 * 120.00481 * 179.97438 * 4 3 2 6 6 C 1.39738 * 119.99587 * 0.02562 * 5 4 3 7 7 C 1.47685 * 120.00213 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99826 * 219.93922 * 7 6 5 9 9 N 1.34779 * 120.00085 * 39.93479 * 7 6 5 10 10 C 1.46494 * 119.99763 * 355.19606 * 9 7 6 11 11 C 1.46497 * 120.00010 * 175.19445 * 9 7 6 12 12 H 1.09002 * 108.44696 * 2.31117 * 11 9 7 13 13 C 1.52565 * 108.39208 * 244.69297 * 11 9 7 14 14 C 1.50876 * 109.36422 * 153.82270 * 13 11 9 15 15 C 1.54302 * 110.23291 * 91.79529 * 14 13 11 16 16 N 1.47599 * 111.94311 * 319.70300 * 15 14 13 17 17 C 1.36940 * 118.64248 * 137.77920 * 16 15 14 18 18 H 1.07991 * 120.00001 * 204.01791 * 17 16 15 19 19 C 1.38810 * 119.99863 * 24.02047 * 17 16 15 20 20 N 1.31616 * 120.00544 * 34.37922 * 19 17 16 21 21 Si 1.86808 * 119.99867 * 214.11152 * 19 17 16 22 22 H 1.48499 * 109.47226 * 180.27441 * 21 19 17 23 23 H 1.48501 * 109.46719 * 300.27397 * 21 19 17 24 24 H 1.48503 * 109.47145 * 60.27228 * 21 19 17 25 25 C 1.44571 * 122.71523 * 317.49782 * 16 15 14 26 26 C 1.47093 * 108.51391 * 120.00116 * 11 9 7 27 27 C 1.39747 * 119.99509 * 0.25345 * 6 5 4 28 28 C 1.37600 * 119.99162 * 359.46709 * 27 6 5 29 29 H 4.51951 * 14.06456 * 0.02562 * 4 2 1 30 30 H 1.08003 * 119.99588 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99971 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47302 * 273.23040 * 10 9 7 33 33 H 1.09002 * 109.47237 * 33.23761 * 10 9 7 34 34 H 1.09008 * 109.46920 * 153.22828 * 10 9 7 35 35 H 1.09000 * 109.48765 * 273.78917 * 13 11 9 36 36 H 1.08999 * 109.49214 * 33.83168 * 13 11 9 37 37 H 1.08996 * 109.37325 * 212.07596 * 14 13 11 38 38 H 1.09001 * 109.36760 * 331.82381 * 14 13 11 39 39 H 1.09006 * 109.13581 * 199.01786 * 15 14 13 40 40 H 1.08996 * 108.95868 * 80.27245 * 15 14 13 41 41 H 0.97008 * 119.99400 * 0.05379 * 20 19 17 42 42 H 1.09000 * 109.45276 * 211.02422 * 25 16 15 43 43 H 1.09001 * 109.45022 * 330.94385 * 25 16 15 44 44 H 1.08997 * 109.32380 * 63.63783 * 26 11 9 45 45 H 1.09002 * 109.18836 * 304.07166 * 26 11 9 46 46 H 1.08001 * 120.00185 * 179.74940 * 27 6 5 47 47 H 1.08007 * 119.99545 * 180.27797 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3051 -1.1031 -0.4951 5 6 4.6811 -1.1023 -0.4956 6 6 5.3793 0.0022 -0.0004 7 6 6.8561 0.0030 -0.0004 8 8 7.4638 0.4634 0.9468 9 7 7.5303 -0.5068 -1.0502 10 6 6.8020 -1.1561 -2.1429 11 6 8.9914 -0.4114 -1.0986 12 1 9.3366 0.0645 -0.1807 13 6 9.3771 0.4755 -2.2786 14 6 10.7181 1.1119 -2.0087 15 6 11.8504 0.2344 -2.5823 16 7 11.6003 -1.2032 -2.3603 17 6 11.8642 -2.0803 -3.3784 18 1 11.3576 -3.0333 -3.4150 19 6 12.7830 -1.7443 -4.3632 20 7 13.8401 -1.0220 -4.0582 21 14 12.5229 -2.3237 -6.1200 22 1 13.6400 -1.8409 -6.9709 23 1 12.4828 -3.8079 -6.1508 24 1 11.2391 -1.7831 -6.6346 25 6 11.0938 -1.7244 -1.1105 26 6 9.5466 -1.7723 -1.1565 27 6 4.6799 1.1038 0.5001 28 6 3.3039 1.1050 0.4952 29 1 -1.0500 -0.0008 -0.0009 30 1 2.7654 -1.9566 -0.8781 31 1 5.2214 -1.9557 -0.8779 32 1 6.6462 -2.2075 -1.9014 33 1 5.8371 -0.6672 -2.2775 34 1 7.3810 -1.0766 -3.0631 35 1 9.4370 -0.1291 -3.1836 36 1 8.6249 1.2533 -2.4101 37 1 10.7518 2.0962 -2.4758 38 1 10.8583 1.2173 -0.9329 39 1 12.7913 0.5079 -2.1046 40 1 11.9327 0.4181 -3.6535 41 1 13.9776 -0.7250 -3.1450 42 1 11.4835 -2.7299 -0.9520 43 1 11.4128 -1.0788 -0.2922 44 1 9.2279 -2.2528 -2.0815 45 1 9.1779 -2.3461 -0.3062 46 1 5.2194 1.9558 0.8866 47 1 2.7634 1.9582 0.8779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948665958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:04 Heat of formation + Delta-G solvation = 77.391205 kcal Electronic energy + Delta-G solvation = -27625.234307 eV Core-core repulsion = 23968.474521 eV Total energy + Delta-G solvation = -3656.759785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.70838 -39.07557 -37.67588 -35.58650 -34.27517 -33.08968 -31.82099 -31.41878 -30.89485 -29.80403 -27.06419 -26.04254 -25.02611 -23.78732 -23.11402 -22.82436 -20.48526 -19.44480 -19.33469 -19.19478 -17.41425 -17.27659 -16.58769 -16.08842 -15.67928 -15.11175 -14.98839 -14.57878 -14.27213 -13.95314 -13.81168 -13.67377 -13.56889 -13.38442 -13.06985 -12.89850 -12.62288 -12.40255 -12.35237 -12.09803 -11.72735 -11.55689 -11.40081 -10.97650 -10.82659 -10.76699 -10.74695 -10.42718 -10.20545 -10.16224 -9.99695 -9.97413 -9.71839 -9.39722 -9.35419 -8.87752 -8.54278 -8.17889 -6.86881 -6.17894 -3.16078 0.29744 1.02005 2.32582 2.33135 2.89120 3.08342 3.47706 3.51249 3.63952 3.69384 3.82626 4.35866 4.52616 4.57491 4.58902 4.93252 5.08179 5.10943 5.16231 5.16827 5.19932 5.33602 5.44190 5.49669 5.57270 5.63983 5.65888 5.73710 5.86955 5.90090 5.93271 6.02146 6.04610 6.09666 6.21474 6.34539 6.39024 6.45737 6.53701 6.59330 6.70718 6.73182 6.81971 6.89036 7.07968 7.10146 7.17723 7.45474 8.07948 8.15873 8.58134 9.16645 9.89057 10.28110 11.16055 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.002697 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.309958 B =10377.670522 C =11007.238208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.024 3.976 4 C -0.102 4.102 5 C -0.092 4.092 6 C -0.113 4.113 7 C 0.552 3.448 8 O -0.538 6.538 9 N -0.603 5.603 10 C 0.070 3.930 11 C 0.155 3.845 12 H 0.088 0.912 13 C -0.110 4.110 14 C -0.134 4.134 15 C 0.156 3.844 16 N -0.593 5.593 17 C -0.369 4.369 18 H 0.056 0.944 19 C -0.017 4.017 20 N -0.902 5.902 21 Si 1.056 2.944 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.165 3.835 26 C -0.151 4.151 27 C -0.066 4.066 28 C -0.102 4.102 29 H 0.225 0.775 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.067 0.933 41 H 0.270 0.730 42 H 0.051 0.949 43 H 0.032 0.968 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.137 0.863 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.210 2.399 6.101 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C 0.023 3.977 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.116 4.116 7 C 0.340 3.660 8 O -0.416 6.416 9 N -0.334 5.334 10 C -0.073 4.073 11 C 0.054 3.946 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.174 4.174 15 C 0.031 3.969 16 N -0.316 5.316 17 C -0.498 4.498 18 H 0.074 0.926 19 C -0.221 4.221 20 N -0.541 5.541 21 Si 0.886 3.114 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.222 1.222 25 C 0.036 3.964 26 C -0.193 4.193 27 C -0.085 4.085 28 C -0.120 4.120 29 H 0.242 0.758 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.155 0.845 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.172 2.666 5.047 22.895 hybrid contribution -1.038 -0.169 1.467 1.805 sum -23.209 2.498 6.514 24.235 Atomic orbital electron populations 1.24923 0.95784 0.99132 0.98986 1.20037 0.92019 1.01493 1.01588 1.16146 0.86655 0.95055 0.99804 1.21136 0.93730 0.97654 0.99506 1.21596 0.93991 0.98186 0.97282 1.20132 0.93548 0.96231 1.01699 1.18331 0.86808 0.78156 0.82680 1.90783 1.69583 1.47045 1.34182 1.48229 1.08148 1.56715 1.20319 1.22102 0.97402 0.96938 0.90900 1.20210 0.76483 0.97649 1.00243 0.89380 1.21276 0.96576 0.98056 0.98973 1.21890 0.96037 0.98888 1.00552 1.21251 0.93093 0.82786 0.99819 1.43723 1.75671 1.01457 1.10710 1.19846 1.23691 1.01609 1.04614 0.92624 1.25708 0.91507 1.00659 1.04235 1.70829 1.21313 1.38871 1.23085 0.83638 0.75694 0.75582 0.76483 1.21258 1.22010 1.22150 1.20536 0.89793 0.97677 0.88402 1.21823 1.00993 0.95135 1.01318 1.21122 0.93459 0.97745 0.96158 1.21138 0.93687 0.97708 0.99450 0.75818 0.84961 0.84014 0.92366 0.90901 0.90142 0.90184 0.93169 0.92340 0.93068 0.96523 0.91485 0.91925 0.93098 0.95007 0.91484 0.93111 0.84521 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 19.25 29.55 0.57 -0.62 16 2 C -0.15 -1.38 13.23 -38.83 -0.51 -1.89 16 3 C 0.02 0.23 5.73 -106.87 -0.61 -0.38 16 4 C -0.10 -0.92 9.73 -39.26 -0.38 -1.30 16 5 C -0.09 -0.90 7.52 -39.25 -0.30 -1.20 16 6 C -0.11 -1.36 5.22 -104.91 -0.55 -1.91 16 7 C 0.55 8.37 7.34 -12.40 -0.09 8.28 16 8 O -0.54 -10.04 16.22 5.29 0.09 -9.95 16 9 N -0.60 -8.69 2.58 -178.66 -0.46 -9.15 16 10 C 0.07 0.78 7.82 59.84 0.47 1.25 16 11 C 0.16 2.61 1.96 -70.99 -0.14 2.47 16 12 H 0.09 1.65 6.04 -51.93 -0.31 1.34 16 13 C -0.11 -1.91 4.35 -28.02 -0.12 -2.03 16 14 C -0.13 -2.47 5.71 -27.12 -0.15 -2.63 16 15 C 0.16 3.53 4.63 -2.76 -0.01 3.52 16 16 N -0.59 -14.08 2.15 -171.88 -0.37 -14.45 16 17 C -0.37 -9.82 9.26 -15.06 -0.14 -9.96 16 18 H 0.06 1.51 8.02 -52.49 -0.42 1.08 16 19 C -0.02 -0.48 4.31 -17.43 -0.08 -0.55 16 20 N -0.90 -26.41 12.74 55.49 0.71 -25.70 16 21 Si 1.06 24.55 30.03 -169.99 -5.11 19.45 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.16 3.40 5.65 -4.09 -0.02 3.38 16 26 C -0.15 -2.67 4.89 -28.58 -0.14 -2.81 16 27 C -0.07 -0.72 9.61 -39.25 -0.38 -1.10 16 28 C -0.10 -0.96 9.73 -39.26 -0.38 -1.35 16 29 H 0.23 0.67 7.80 -54.09 -0.42 0.24 16 30 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.14 1.20 5.40 -52.49 -0.28 0.92 16 32 H 0.06 0.57 6.97 -51.93 -0.36 0.21 16 33 H 0.07 0.69 5.75 -51.93 -0.30 0.39 16 34 H 0.08 0.96 7.23 -51.92 -0.38 0.59 16 35 H 0.08 1.54 7.20 -51.93 -0.37 1.17 16 36 H 0.05 0.80 8.04 -51.93 -0.42 0.39 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.93 7.32 -51.93 -0.38 0.55 16 39 H 0.02 0.40 7.36 -51.93 -0.38 0.02 16 40 H 0.07 1.68 6.68 -51.93 -0.35 1.34 16 41 H 0.27 7.99 6.74 -40.82 -0.28 7.72 16 42 H 0.05 1.08 7.99 -51.93 -0.41 0.67 16 43 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 44 H 0.07 1.23 7.61 -51.93 -0.40 0.83 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.14 1.45 8.05 -52.49 -0.42 1.02 16 47 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -31.78 375.64 -9.24 -41.02 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.79 Total: 1.97 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.97 Total: -8.85 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.12 Total: -49.30 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.11 Total: 19.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.78 -9.24 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948665958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.413 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds