Wall clock time and date at job start Tue Mar 31 2020 14:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39714 * 120.00172 * 24.15215 * 3 2 1 5 5 C 1.37600 * 120.00481 * 179.97438 * 4 3 2 6 6 C 1.39738 * 119.99587 * 0.02562 * 5 4 3 7 7 C 1.47685 * 120.00213 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99826 * 219.93922 * 7 6 5 9 9 N 1.34779 * 120.00085 * 39.93479 * 7 6 5 10 10 C 1.46494 * 119.99763 * 355.19606 * 9 7 6 11 11 C 1.46497 * 120.00010 * 175.19445 * 9 7 6 12 12 H 1.09002 * 108.44696 * 2.31117 * 11 9 7 13 13 C 1.52565 * 108.39208 * 244.69297 * 11 9 7 14 14 C 1.50876 * 109.36422 * 153.82270 * 13 11 9 15 15 C 1.54302 * 110.23291 * 91.79529 * 14 13 11 16 16 N 1.47599 * 111.94311 * 319.70300 * 15 14 13 17 17 C 1.36940 * 118.64248 * 137.77920 * 16 15 14 18 18 H 1.07991 * 120.00001 * 204.01791 * 17 16 15 19 19 C 1.38810 * 119.99863 * 24.02047 * 17 16 15 20 20 N 1.31616 * 120.00544 * 34.37922 * 19 17 16 21 21 Si 1.86808 * 119.99867 * 214.11152 * 19 17 16 22 22 H 1.48499 * 109.47226 * 180.27441 * 21 19 17 23 23 H 1.48501 * 109.46719 * 300.27397 * 21 19 17 24 24 H 1.48503 * 109.47145 * 60.27228 * 21 19 17 25 25 C 1.44571 * 122.71523 * 317.49782 * 16 15 14 26 26 C 1.47093 * 108.51391 * 120.00116 * 11 9 7 27 27 C 1.39747 * 119.99509 * 0.25345 * 6 5 4 28 28 C 1.37600 * 119.99162 * 359.46709 * 27 6 5 29 29 H 4.51951 * 14.06456 * 0.02562 * 4 2 1 30 30 H 1.08003 * 119.99588 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.99971 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47302 * 273.23040 * 10 9 7 33 33 H 1.09002 * 109.47237 * 33.23761 * 10 9 7 34 34 H 1.09008 * 109.46920 * 153.22828 * 10 9 7 35 35 H 1.09000 * 109.48765 * 273.78917 * 13 11 9 36 36 H 1.08999 * 109.49214 * 33.83168 * 13 11 9 37 37 H 1.08996 * 109.37325 * 212.07596 * 14 13 11 38 38 H 1.09001 * 109.36760 * 331.82381 * 14 13 11 39 39 H 1.09006 * 109.13581 * 199.01786 * 15 14 13 40 40 H 1.08996 * 108.95868 * 80.27245 * 15 14 13 41 41 H 0.97008 * 119.99400 * 0.05379 * 20 19 17 42 42 H 1.09000 * 109.45276 * 211.02422 * 25 16 15 43 43 H 1.09001 * 109.45022 * 330.94385 * 25 16 15 44 44 H 1.08997 * 109.32380 * 63.63783 * 26 11 9 45 45 H 1.09002 * 109.18836 * 304.07166 * 26 11 9 46 46 H 1.08001 * 120.00185 * 179.74940 * 27 6 5 47 47 H 1.08007 * 119.99545 * 180.27797 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3051 -1.1031 -0.4951 5 6 4.6811 -1.1023 -0.4956 6 6 5.3793 0.0022 -0.0004 7 6 6.8561 0.0030 -0.0004 8 8 7.4638 0.4634 0.9468 9 7 7.5303 -0.5068 -1.0502 10 6 6.8020 -1.1561 -2.1429 11 6 8.9914 -0.4114 -1.0986 12 1 9.3366 0.0645 -0.1807 13 6 9.3771 0.4755 -2.2786 14 6 10.7181 1.1119 -2.0087 15 6 11.8504 0.2344 -2.5823 16 7 11.6003 -1.2032 -2.3603 17 6 11.8642 -2.0803 -3.3784 18 1 11.3576 -3.0333 -3.4150 19 6 12.7830 -1.7443 -4.3632 20 7 13.8401 -1.0220 -4.0582 21 14 12.5229 -2.3237 -6.1200 22 1 13.6400 -1.8409 -6.9709 23 1 12.4828 -3.8079 -6.1508 24 1 11.2391 -1.7831 -6.6346 25 6 11.0938 -1.7244 -1.1105 26 6 9.5466 -1.7723 -1.1565 27 6 4.6799 1.1038 0.5001 28 6 3.3039 1.1050 0.4952 29 1 -1.0500 -0.0008 -0.0009 30 1 2.7654 -1.9566 -0.8781 31 1 5.2214 -1.9557 -0.8779 32 1 6.6462 -2.2075 -1.9014 33 1 5.8371 -0.6672 -2.2775 34 1 7.3810 -1.0766 -3.0631 35 1 9.4370 -0.1291 -3.1836 36 1 8.6249 1.2533 -2.4101 37 1 10.7518 2.0962 -2.4758 38 1 10.8583 1.2173 -0.9329 39 1 12.7913 0.5079 -2.1046 40 1 11.9327 0.4181 -3.6535 41 1 13.9776 -0.7250 -3.1450 42 1 11.4835 -2.7299 -0.9520 43 1 11.4128 -1.0788 -0.2922 44 1 9.2279 -2.2528 -2.0815 45 1 9.1779 -2.3461 -0.3062 46 1 5.2194 1.9558 0.8866 47 1 2.7634 1.9582 0.8779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948665958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:02 Heat of formation + Delta-G solvation = 61.621676 kcal Electronic energy + Delta-G solvation = -27625.918125 eV Core-core repulsion = 23968.474521 eV Total energy + Delta-G solvation = -3657.443604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79777 -40.12162 -39.06389 -37.04950 -35.19130 -34.45591 -33.44648 -32.47650 -31.97688 -30.97872 -28.13109 -27.74970 -26.32917 -25.28701 -24.56311 -23.65076 -21.71586 -21.11862 -20.55836 -19.97609 -19.19619 -18.46816 -17.76330 -16.81504 -16.68628 -16.57379 -16.25509 -15.81790 -15.57446 -15.44988 -15.25960 -14.95072 -14.62957 -14.45773 -14.23841 -14.11539 -14.01147 -13.93204 -13.40180 -13.33812 -12.94302 -12.75720 -12.57003 -12.36780 -12.29877 -12.15752 -12.10507 -11.93917 -11.82819 -11.68662 -11.53034 -11.43051 -11.28873 -10.95303 -10.24859 -10.08517 -9.78118 -9.57181 -8.86960 -8.31754 -5.27940 -0.46983 0.29933 1.44098 1.60387 1.66775 1.76005 1.84310 1.85920 2.14535 2.67787 2.92121 3.18404 3.25645 3.40599 3.54131 3.71353 3.82822 3.87443 3.99641 4.10189 4.22234 4.25374 4.27750 4.32656 4.42457 4.50294 4.53793 4.60018 4.63821 4.76402 4.81889 4.88170 4.89571 4.95741 4.97095 5.03384 5.10571 5.18190 5.24618 5.27348 5.30161 5.34322 5.38026 5.42250 5.52573 5.75179 5.95450 6.31762 6.41524 6.55482 7.01104 7.13651 7.87222 8.25297 8.99696 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.002697 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.309958 B =10377.670522 C =11007.238208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.205 4.205 3 C 0.024 3.976 4 C -0.101 4.101 5 C -0.085 4.085 6 C -0.134 4.134 7 C 0.552 3.448 8 O -0.582 6.582 9 N -0.601 5.601 10 C 0.065 3.935 11 C 0.162 3.838 12 H 0.070 0.930 13 C -0.099 4.099 14 C -0.124 4.124 15 C 0.165 3.835 16 N -0.604 5.604 17 C -0.365 4.365 18 H 0.052 0.948 19 C -0.069 4.069 20 N -0.933 5.933 21 Si 1.106 2.894 22 H -0.297 1.297 23 H -0.277 1.277 24 H -0.278 1.278 25 C 0.160 3.840 26 C -0.132 4.132 27 C -0.074 4.074 28 C -0.104 4.104 29 H 0.261 0.739 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.054 0.946 39 H -0.006 1.006 40 H 0.038 0.962 41 H 0.253 0.747 42 H 0.041 0.959 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.131 0.869 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.192 1.709 5.546 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.205 4.205 3 C 0.024 3.976 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.137 4.137 7 C 0.342 3.658 8 O -0.464 6.464 9 N -0.332 5.332 10 C -0.076 4.076 11 C 0.060 3.940 12 H 0.088 0.912 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.040 3.960 16 N -0.327 5.327 17 C -0.494 4.494 18 H 0.070 0.930 19 C -0.267 4.267 20 N -0.574 5.574 21 Si 0.931 3.069 22 H -0.223 1.223 23 H -0.203 1.203 24 H -0.204 1.204 25 C 0.032 3.968 26 C -0.172 4.172 27 C -0.092 4.092 28 C -0.122 4.122 29 H 0.277 0.723 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.012 0.988 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.149 0.851 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.204 1.954 4.503 26.660 hybrid contribution 0.056 0.031 1.730 1.731 sum -26.148 1.985 6.233 26.954 Atomic orbital electron populations 1.25844 0.96536 0.96599 0.96136 1.20276 0.92485 1.03838 1.03941 1.16386 0.87524 0.94979 0.98728 1.21387 0.93365 0.98190 0.98970 1.21702 0.94391 0.97664 0.96569 1.19946 0.91550 0.97875 1.04332 1.18798 0.88072 0.77065 0.81898 1.90753 1.70744 1.49032 1.35829 1.48176 1.07101 1.56793 1.21090 1.22334 0.97795 0.98077 0.89432 1.19890 0.78386 0.96717 0.99048 0.91223 1.21152 0.96152 0.98218 0.98255 1.21782 0.95069 0.98875 1.00567 1.21079 0.93872 0.83039 0.98003 1.43887 1.75860 1.01670 1.11328 1.20040 1.22481 1.01807 1.05058 0.93049 1.26990 0.91105 1.00913 1.07680 1.70961 1.23069 1.41369 1.21989 0.82968 0.75736 0.76074 0.72087 1.22347 1.20296 1.20369 1.20658 0.91896 0.96945 0.87276 1.21548 0.98146 0.95912 1.01641 1.21155 0.94162 0.97540 0.96385 1.21291 0.93039 0.98497 0.99370 0.72314 0.82718 0.82609 0.90367 0.88854 0.90772 0.91832 0.91488 0.90480 0.92711 0.98811 0.94312 0.93698 0.94099 0.94775 0.91776 0.91806 0.85067 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 19.25 74.32 1.43 0.07 16 2 C -0.21 -3.18 13.23 30.02 0.40 -2.78 16 3 C 0.02 0.42 5.73 -21.32 -0.12 0.29 16 4 C -0.10 -1.55 9.73 22.48 0.22 -1.33 16 5 C -0.09 -1.47 7.52 22.48 0.17 -1.30 16 6 C -0.13 -3.09 5.22 -20.05 -0.10 -3.19 16 7 C 0.55 16.41 7.34 86.74 0.64 17.04 16 8 O -0.58 -22.02 16.22 -3.98 -0.06 -22.08 16 9 N -0.60 -16.60 2.58 -837.42 -2.16 -18.76 16 10 C 0.07 1.31 7.82 127.77 1.00 2.31 16 11 C 0.16 5.35 1.96 43.01 0.08 5.44 16 12 H 0.07 2.61 6.04 -2.39 -0.01 2.60 16 13 C -0.10 -3.37 4.35 29.76 0.13 -3.24 16 14 C -0.12 -4.56 5.71 30.35 0.17 -4.39 16 15 C 0.17 7.73 4.63 86.61 0.40 8.13 16 16 N -0.60 -29.29 2.15 -697.71 -1.50 -30.79 16 17 C -0.36 -19.64 9.26 84.03 0.78 -18.87 16 18 H 0.05 2.78 8.02 -2.92 -0.02 2.76 16 19 C -0.07 -3.85 4.31 84.86 0.37 -3.48 16 20 N -0.93 -56.31 12.74 21.65 0.28 -56.03 16 21 Si 1.11 49.75 30.03 68.60 2.06 51.81 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 C 0.16 6.67 5.65 87.38 0.49 7.17 16 26 C -0.13 -4.55 4.89 29.39 0.14 -4.40 16 27 C -0.07 -1.57 9.61 22.48 0.22 -1.35 16 28 C -0.10 -1.83 9.73 22.48 0.22 -1.61 16 29 H 0.26 0.26 7.80 -4.42 -0.03 0.22 16 30 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.16 2.17 5.40 -2.91 -0.02 2.15 16 32 H 0.08 1.28 6.97 -2.39 -0.02 1.27 16 33 H 0.09 1.52 5.75 -2.39 -0.01 1.51 16 34 H 0.07 1.62 7.23 -2.38 -0.02 1.60 16 35 H 0.06 2.40 7.20 -2.39 -0.02 2.38 16 36 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 1.99 7.32 -2.39 -0.02 1.97 16 39 H -0.01 -0.30 7.36 -2.38 -0.02 -0.32 16 40 H 0.04 2.01 6.68 -2.39 -0.02 1.99 16 41 H 0.25 15.71 6.74 -92.70 -0.62 15.08 16 42 H 0.04 1.76 7.99 -2.39 -0.02 1.74 16 43 H 0.03 1.39 8.07 -2.39 -0.02 1.38 16 44 H 0.06 2.27 7.61 -2.39 -0.02 2.25 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.13 2.83 8.05 -2.91 -0.02 2.80 16 47 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.10 375.64 6.35 -64.75 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.11 Total: 16.60 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.63 Total: -5.49 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.38 Total: -105.59 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.06 Total: 51.81 kcal Total: -71.10 6.35 -64.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948665958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.369 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds