Wall clock time and date at job start Tue Mar 31 2020 14:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00065 * 2 1 4 4 C 1.50704 * 109.46822 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00327 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63139 * 180.02562 * 6 4 3 8 8 C 1.53194 * 108.89485 * 126.45744 * 7 6 4 9 9 C 1.53039 * 109.31143 * 54.56242 * 8 7 6 10 10 C 1.52998 * 109.45945 * 178.61315 * 9 8 7 11 11 H 1.08996 * 109.49706 * 60.06794 * 10 9 8 12 12 C 1.53039 * 109.49816 * 180.16306 * 10 9 8 13 13 C 1.53043 * 109.53911 * 181.31873 * 12 10 9 14 14 C 1.53191 * 109.31189 * 298.63153 * 13 12 10 15 15 N 1.46925 * 108.77171 * 54.63841 * 14 13 12 16 16 C 1.36936 * 120.63283 * 126.37071 * 15 14 13 17 17 H 1.08002 * 120.00024 * 331.84885 * 16 15 14 18 18 C 1.38816 * 120.00023 * 151.85024 * 16 15 14 19 19 N 1.31616 * 120.00306 * 343.07063 * 18 16 15 20 20 Si 1.86802 * 119.99600 * 163.06996 * 18 16 15 21 21 H 1.48500 * 109.47202 * 60.00296 * 20 18 16 22 22 H 1.48504 * 109.47069 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47128 * 299.99968 * 20 18 16 24 24 C 1.46933 * 118.73981 * 306.38532 * 15 14 13 25 25 C 1.53041 * 109.53933 * 298.63432 * 9 8 7 26 26 C 1.46958 * 120.65327 * 359.81147 * 6 4 3 27 27 H 1.09003 * 109.46737 * 59.99826 * 1 2 3 28 28 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46582 * 300.00126 * 1 2 3 30 30 H 1.08994 * 109.47132 * 60.00500 * 3 2 1 31 31 H 1.08990 * 109.47204 * 299.99890 * 3 2 1 32 32 H 1.09000 * 109.58607 * 6.60052 * 7 6 4 33 33 H 1.08998 * 109.58514 * 246.31606 * 7 6 4 34 34 H 1.08991 * 109.49822 * 174.51239 * 8 7 6 35 35 H 1.08996 * 109.49407 * 294.61186 * 8 7 6 36 36 H 1.08996 * 109.45987 * 58.65386 * 9 8 7 37 37 H 1.09005 * 109.46202 * 301.33415 * 12 10 9 38 38 H 1.09001 * 109.46329 * 61.29690 * 12 10 9 39 39 H 1.08999 * 109.49877 * 178.68041 * 13 12 10 40 40 H 1.08998 * 109.49517 * 58.58828 * 13 12 10 41 41 H 1.08996 * 109.58753 * 294.84767 * 14 13 12 42 42 H 1.08998 * 109.70047 * 174.48957 * 14 13 12 43 43 H 0.96997 * 119.99865 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58704 * 293.82843 * 24 15 14 45 45 H 1.08995 * 109.70227 * 173.46971 * 24 15 14 46 46 H 1.09007 * 109.49890 * 181.31729 * 25 9 8 47 47 H 1.08996 * 109.50094 * 301.41559 * 25 9 8 48 48 H 1.09001 * 109.46575 * 113.75900 * 26 6 4 49 49 H 1.09003 * 109.71279 * 353.47450 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7196 1.9372 0.0006 5 8 4.4405 0.9619 0.0006 6 7 4.2577 3.1729 0.0013 7 6 5.7157 3.3545 0.0013 8 6 6.1015 4.2711 -1.1640 9 6 5.3058 5.5748 -1.0672 10 6 5.7138 6.5069 -2.2099 11 1 5.5046 6.0249 -3.1649 12 6 4.9216 7.8126 -2.1117 13 6 5.3050 8.7325 -3.2731 14 6 6.7978 9.0650 -3.1846 15 7 7.5594 7.8097 -3.1323 16 6 8.5744 7.5719 -4.0203 17 1 8.5524 8.0262 -4.9999 18 6 9.6315 6.7468 -3.6615 19 7 9.8438 6.4627 -2.3940 20 14 10.7527 6.0396 -4.9777 21 1 11.4002 7.1481 -5.7242 22 1 11.7954 5.1968 -4.3391 23 1 9.9535 5.2113 -5.9159 24 6 7.2112 6.8141 -2.1094 25 6 3.8095 5.2699 -1.1675 26 6 3.3977 4.3646 -0.0028 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8033 2.2371 0.8900 31 1 1.8033 2.2371 -0.8899 32 1 6.2044 2.3874 -0.1172 33 1 6.0273 3.8085 0.9420 34 1 7.1678 4.4913 -1.1159 35 1 5.8740 3.7752 -2.1075 36 1 5.5148 6.0578 -0.1127 37 1 3.8546 7.5944 -2.1583 38 1 5.1502 8.3059 -1.1670 39 1 4.7233 9.6526 -3.2158 40 1 5.0995 8.2300 -4.2183 41 1 6.9897 9.6467 -2.2831 42 1 7.0990 9.6389 -4.0609 43 1 10.5822 5.8859 -2.1434 44 1 7.4369 7.2123 -1.1201 45 1 7.7834 5.9013 -2.2751 46 1 3.2445 6.2011 -1.1221 47 1 3.6036 4.7646 -2.1111 48 1 3.5177 4.9024 0.9377 49 1 2.3562 4.0661 -0.1227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961325238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:16 Heat of formation + Delta-G solvation = -26.463942 kcal Electronic energy + Delta-G solvation = -26709.285129 eV Core-core repulsion = 23183.465797 eV Total energy + Delta-G solvation = -3525.819331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.30551 -38.47628 -36.69301 -33.94966 -32.75318 -31.60008 -30.29481 -29.96297 -29.26692 -28.67564 -25.35878 -24.87797 -23.36438 -21.83081 -21.60282 -20.26321 -19.15220 -18.91008 -17.42179 -16.75229 -16.63447 -15.94013 -15.51902 -15.00288 -14.46160 -14.20346 -14.09336 -14.05871 -13.89410 -13.72611 -13.52226 -13.34004 -13.28959 -12.86024 -12.71677 -12.57932 -12.47862 -12.25426 -12.06025 -11.80141 -11.21247 -11.03961 -10.93812 -10.78109 -10.62683 -10.42596 -10.27871 -10.23774 -10.18972 -9.99489 -9.94569 -9.80698 -9.44411 -9.20093 -8.68368 -8.44733 -7.92713 -6.63894 -5.77747 -3.19932 1.18309 2.24583 2.44584 2.90738 3.39140 3.45503 3.46577 4.21075 4.50308 4.62936 4.67638 4.77781 4.80010 4.85318 4.88107 4.99354 5.14493 5.32129 5.33416 5.35058 5.41458 5.54633 5.56400 5.60808 5.71135 5.79185 5.80740 5.90963 6.01052 6.12580 6.14765 6.31760 6.33260 6.37044 6.50427 6.55706 6.61116 6.65336 6.74880 6.84772 6.95488 7.02743 7.24997 7.41800 7.67996 7.80648 8.00285 8.47031 9.23485 9.86800 10.43921 11.30309 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.002951 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.792414 B = 9486.847442 C =10573.846592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.187 6.187 3 C -0.125 4.125 4 C 0.530 3.470 5 O -0.523 6.523 6 N -0.604 5.604 7 C 0.113 3.887 8 C -0.131 4.131 9 C -0.075 4.075 10 C -0.106 4.106 11 H 0.061 0.939 12 C -0.104 4.104 13 C -0.134 4.134 14 C 0.144 3.856 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.178 3.822 25 C -0.131 4.131 26 C 0.106 3.894 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.015 0.985 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.014 0.986 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.733 -5.032 6.846 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.037 5.963 3 C -0.276 4.276 4 C 0.315 3.685 5 O -0.399 6.399 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.169 4.169 9 C -0.094 4.094 10 C -0.127 4.127 11 H 0.080 0.920 12 C -0.141 4.141 13 C -0.174 4.174 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.730 3.270 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.053 3.947 25 C -0.170 4.170 26 C -0.017 4.017 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.502 -6.511 6.915 20.797 hybrid contribution -0.383 0.907 -0.669 1.190 sum -18.884 -5.604 6.246 20.665 Atomic orbital electron populations 1.23535 0.96003 1.06717 1.04825 1.87584 1.04375 1.06316 1.97993 1.23567 0.98182 0.99035 1.06836 1.19599 0.88725 0.83262 0.76877 1.90746 1.61890 1.38050 1.49208 1.48089 1.07881 1.05027 1.72839 1.21734 0.78434 1.01483 0.99213 1.22027 1.02104 0.95020 0.97708 1.21085 0.92920 0.95530 0.99889 1.21861 1.00069 0.93869 0.96851 0.92042 1.21483 0.97875 0.96403 0.98348 1.22007 0.98878 0.98082 0.98401 1.20903 0.89678 0.89275 0.98367 1.44040 1.36817 1.13370 1.37291 1.19131 0.98084 1.27562 0.93393 0.91916 1.25014 0.96709 1.02126 0.95665 1.70011 1.31032 1.39336 1.14296 0.86412 0.80224 0.79077 0.81327 1.20938 1.21581 1.21056 1.20839 0.88673 0.94680 0.90554 1.22054 0.97917 0.99173 0.97814 1.21830 0.93706 0.86303 0.99861 0.90499 0.87782 0.90551 0.87364 0.87239 0.89080 0.91329 0.88888 0.91783 0.91352 0.93667 0.92973 0.93458 0.92624 0.96713 0.93121 0.93610 0.96760 0.89197 0.90365 0.91643 0.91049 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 10.76 101.05 1.09 0.20 16 2 S -0.19 -2.03 21.52 -107.50 -2.31 -4.35 16 3 C -0.13 -1.17 4.77 36.01 0.17 -1.00 16 4 C 0.53 6.98 7.72 -10.98 -0.08 6.90 16 5 O -0.52 -9.07 15.28 5.55 0.08 -8.98 16 6 N -0.60 -7.26 2.98 -172.76 -0.51 -7.77 16 7 C 0.11 1.53 6.43 -3.71 -0.02 1.51 16 8 C -0.13 -1.96 5.05 -26.61 -0.13 -2.10 16 9 C -0.08 -1.05 1.74 -90.58 -0.16 -1.21 16 10 C -0.11 -1.84 1.92 -90.50 -0.17 -2.02 16 11 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.10 -1.61 4.86 -26.69 -0.13 -1.74 16 13 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 14 C 0.14 3.00 6.52 -3.71 -0.02 2.98 16 15 N -0.59 -14.64 2.99 -172.32 -0.52 -15.15 16 16 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 17 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 18 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 20 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.18 4.02 4.06 -3.71 -0.02 4.00 16 25 C -0.13 -1.42 5.05 -26.63 -0.13 -1.56 16 26 C 0.11 0.96 6.33 -3.71 -0.02 0.94 16 27 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.11 0.75 7.95 -51.93 -0.41 0.34 16 31 H 0.11 0.82 7.69 -51.93 -0.40 0.42 16 32 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.62 6.49 -51.93 -0.34 1.28 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.59 6.33 -51.93 -0.33 0.27 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 2.27 4.64 -51.93 -0.24 2.02 16 46 H 0.08 0.76 6.34 -51.93 -0.33 0.43 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.51 5.95 -51.93 -0.31 0.20 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -31.78 381.16 -10.56 -42.33 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.60 Total: -0.90 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.03 Total: -2.54 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.41 Total: -47.98 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.31 Total: -4.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.78 -10.56 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961325238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.871 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds