Wall clock time and date at job start Tue Mar 31 2020 14:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00065 * 2 1 4 4 C 1.50704 * 109.46822 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00327 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63139 * 180.02562 * 6 4 3 8 8 C 1.53194 * 108.89485 * 126.45744 * 7 6 4 9 9 C 1.53039 * 109.31143 * 54.56242 * 8 7 6 10 10 C 1.52998 * 109.45945 * 178.61315 * 9 8 7 11 11 H 1.08996 * 109.49706 * 60.06794 * 10 9 8 12 12 C 1.53039 * 109.49816 * 180.16306 * 10 9 8 13 13 C 1.53043 * 109.53911 * 181.31873 * 12 10 9 14 14 C 1.53191 * 109.31189 * 298.63153 * 13 12 10 15 15 N 1.46925 * 108.77171 * 54.63841 * 14 13 12 16 16 C 1.36936 * 120.63283 * 126.37071 * 15 14 13 17 17 H 1.08002 * 120.00024 * 331.84885 * 16 15 14 18 18 C 1.38816 * 120.00023 * 151.85024 * 16 15 14 19 19 N 1.31616 * 120.00306 * 343.07063 * 18 16 15 20 20 Si 1.86802 * 119.99600 * 163.06996 * 18 16 15 21 21 H 1.48500 * 109.47202 * 60.00296 * 20 18 16 22 22 H 1.48504 * 109.47069 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47128 * 299.99968 * 20 18 16 24 24 C 1.46933 * 118.73981 * 306.38532 * 15 14 13 25 25 C 1.53041 * 109.53933 * 298.63432 * 9 8 7 26 26 C 1.46958 * 120.65327 * 359.81147 * 6 4 3 27 27 H 1.09003 * 109.46737 * 59.99826 * 1 2 3 28 28 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46582 * 300.00126 * 1 2 3 30 30 H 1.08994 * 109.47132 * 60.00500 * 3 2 1 31 31 H 1.08990 * 109.47204 * 299.99890 * 3 2 1 32 32 H 1.09000 * 109.58607 * 6.60052 * 7 6 4 33 33 H 1.08998 * 109.58514 * 246.31606 * 7 6 4 34 34 H 1.08991 * 109.49822 * 174.51239 * 8 7 6 35 35 H 1.08996 * 109.49407 * 294.61186 * 8 7 6 36 36 H 1.08996 * 109.45987 * 58.65386 * 9 8 7 37 37 H 1.09005 * 109.46202 * 301.33415 * 12 10 9 38 38 H 1.09001 * 109.46329 * 61.29690 * 12 10 9 39 39 H 1.08999 * 109.49877 * 178.68041 * 13 12 10 40 40 H 1.08998 * 109.49517 * 58.58828 * 13 12 10 41 41 H 1.08996 * 109.58753 * 294.84767 * 14 13 12 42 42 H 1.08998 * 109.70047 * 174.48957 * 14 13 12 43 43 H 0.96997 * 119.99865 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58704 * 293.82843 * 24 15 14 45 45 H 1.08995 * 109.70227 * 173.46971 * 24 15 14 46 46 H 1.09007 * 109.49890 * 181.31729 * 25 9 8 47 47 H 1.08996 * 109.50094 * 301.41559 * 25 9 8 48 48 H 1.09001 * 109.46575 * 113.75900 * 26 6 4 49 49 H 1.09003 * 109.71279 * 353.47450 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7196 1.9372 0.0006 5 8 4.4405 0.9619 0.0006 6 7 4.2577 3.1729 0.0013 7 6 5.7157 3.3545 0.0013 8 6 6.1015 4.2711 -1.1640 9 6 5.3058 5.5748 -1.0672 10 6 5.7138 6.5069 -2.2099 11 1 5.5046 6.0249 -3.1649 12 6 4.9216 7.8126 -2.1117 13 6 5.3050 8.7325 -3.2731 14 6 6.7978 9.0650 -3.1846 15 7 7.5594 7.8097 -3.1323 16 6 8.5744 7.5719 -4.0203 17 1 8.5524 8.0262 -4.9999 18 6 9.6315 6.7468 -3.6615 19 7 9.8438 6.4627 -2.3940 20 14 10.7527 6.0396 -4.9777 21 1 11.4002 7.1481 -5.7242 22 1 11.7954 5.1968 -4.3391 23 1 9.9535 5.2113 -5.9159 24 6 7.2112 6.8141 -2.1094 25 6 3.8095 5.2699 -1.1675 26 6 3.3977 4.3646 -0.0028 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8033 2.2371 0.8900 31 1 1.8033 2.2371 -0.8899 32 1 6.2044 2.3874 -0.1172 33 1 6.0273 3.8085 0.9420 34 1 7.1678 4.4913 -1.1159 35 1 5.8740 3.7752 -2.1075 36 1 5.5148 6.0578 -0.1127 37 1 3.8546 7.5944 -2.1583 38 1 5.1502 8.3059 -1.1670 39 1 4.7233 9.6526 -3.2158 40 1 5.0995 8.2300 -4.2183 41 1 6.9897 9.6467 -2.2831 42 1 7.0990 9.6389 -4.0609 43 1 10.5822 5.8859 -2.1434 44 1 7.4369 7.2123 -1.1201 45 1 7.7834 5.9013 -2.2751 46 1 3.2445 6.2011 -1.1221 47 1 3.6036 4.7646 -2.1111 48 1 3.5177 4.9024 0.9377 49 1 2.3562 4.0661 -0.1227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961325238.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:15 Heat of formation + Delta-G solvation = -44.663462 kcal Electronic energy + Delta-G solvation = -26710.074319 eV Core-core repulsion = 23183.465797 eV Total energy + Delta-G solvation = -3526.608522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34030 -39.81998 -38.02128 -35.44531 -34.32173 -32.71732 -31.68813 -31.30912 -30.20139 -29.44920 -27.22829 -26.04876 -24.64418 -23.14689 -23.10379 -21.49806 -20.57140 -20.05543 -18.72915 -18.25296 -17.58972 -16.97314 -16.76014 -16.42392 -15.89075 -15.52790 -15.18096 -15.11814 -14.97385 -14.85909 -14.65913 -14.44007 -14.35188 -14.13234 -13.99295 -13.78904 -13.55365 -13.37135 -13.19981 -12.98024 -12.87717 -12.68224 -12.36345 -12.28418 -12.13472 -12.10013 -11.76062 -11.70204 -11.49069 -11.32491 -11.03466 -10.93517 -10.82724 -10.71776 -10.49023 -9.69769 -8.70961 -8.63947 -7.86799 -5.31909 0.50296 1.42792 1.45688 1.48853 1.51692 1.65366 1.98979 2.49281 3.25815 3.38989 3.65043 3.80432 3.84566 3.99425 4.05905 4.14536 4.19399 4.26188 4.30083 4.31642 4.40238 4.40600 4.47330 4.51775 4.56838 4.66412 4.78646 4.80229 4.88879 4.91303 4.94470 4.99609 5.01871 5.11721 5.18777 5.20936 5.22493 5.35778 5.40821 5.46823 5.53048 5.58564 5.63588 5.76495 5.88147 6.32782 6.40620 7.04364 7.16795 7.90106 8.40105 9.17570 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.002951 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.792414 B = 9486.847442 C =10573.846592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.279 6.279 3 C -0.104 4.104 4 C 0.520 3.480 5 O -0.576 6.576 6 N -0.602 5.602 7 C 0.121 3.879 8 C -0.122 4.122 9 C -0.068 4.068 10 C -0.094 4.094 11 H 0.044 0.956 12 C -0.098 4.098 13 C -0.125 4.125 14 C 0.136 3.864 15 N -0.615 5.615 16 C -0.263 4.263 17 H 0.061 0.939 18 C -0.048 4.048 19 N -0.930 5.930 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.281 1.281 24 C 0.186 3.814 25 C -0.123 4.123 26 C 0.104 3.896 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.011 0.989 42 H 0.045 0.955 43 H 0.249 0.751 44 H -0.011 1.011 45 H 0.054 0.946 46 H 0.105 0.895 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.952 -3.841 7.172 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.055 6.055 3 C -0.254 4.254 4 C 0.308 3.692 5 O -0.456 6.456 6 N -0.335 5.335 7 C -0.002 4.002 8 C -0.161 4.161 9 C -0.088 4.088 10 C -0.114 4.114 11 H 0.062 0.938 12 C -0.135 4.135 13 C -0.164 4.164 14 C 0.011 3.989 15 N -0.338 5.338 16 C -0.393 4.393 17 H 0.079 0.921 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.208 1.208 24 C 0.061 3.939 25 C -0.161 4.161 26 C -0.018 4.018 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.123 0.877 47 H 0.078 0.922 48 H 0.109 0.891 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.769 -5.272 7.233 24.465 hybrid contribution 0.960 0.603 -0.783 1.378 sum -21.809 -4.669 6.450 23.217 Atomic orbital electron populations 1.23543 0.91023 1.07673 1.06419 1.87953 1.09908 1.09331 1.98280 1.23495 0.94843 0.97483 1.09572 1.20349 0.90445 0.82667 0.75707 1.90729 1.63515 1.39824 1.51497 1.48175 1.07190 1.06058 1.72089 1.21469 0.80193 0.99767 0.98803 1.21864 1.00326 0.96284 0.97600 1.21021 0.95587 0.93650 0.98496 1.21630 0.96384 0.95973 0.97395 0.93768 1.21479 0.99757 0.94460 0.97841 1.21903 0.95809 0.99977 0.98733 1.21104 0.92198 0.87732 0.97881 1.44377 1.36919 1.15354 1.37163 1.19429 0.98733 1.27267 0.93902 0.92135 1.25710 0.98338 1.02909 0.97384 1.70162 1.31495 1.40020 1.15875 0.85470 0.78400 0.78355 0.79044 1.20041 1.22001 1.20752 1.20659 0.92081 0.92545 0.88640 1.22001 0.94755 1.00852 0.98503 1.22128 0.94955 0.84758 0.99918 0.89007 0.87195 0.88715 0.84014 0.84602 0.91505 0.90208 0.92504 0.93557 0.90929 0.89483 0.92626 0.89964 0.93258 0.97128 0.93629 0.94236 0.99336 0.92761 0.87652 0.92174 0.89129 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.76 113.37 1.22 0.12 16 2 S -0.28 -5.71 21.52 -56.49 -1.22 -6.93 16 3 C -0.10 -1.59 4.77 71.24 0.34 -1.25 16 4 C 0.52 13.07 7.72 87.66 0.68 13.75 16 5 O -0.58 -20.56 15.28 -3.04 -0.05 -20.61 16 6 N -0.60 -13.37 2.98 -818.87 -2.44 -15.82 16 7 C 0.12 3.34 6.43 86.36 0.56 3.90 16 8 C -0.12 -3.87 5.05 30.67 0.15 -3.71 16 9 C -0.07 -1.84 1.74 -10.77 -0.02 -1.85 16 10 C -0.09 -3.20 1.92 -10.72 -0.02 -3.22 16 11 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 12 C -0.10 -2.73 4.86 30.62 0.15 -2.58 16 13 C -0.13 -3.91 6.08 30.67 0.19 -3.72 16 14 C 0.14 5.63 6.52 86.36 0.56 6.19 16 15 N -0.61 -31.17 2.99 -699.09 -2.09 -33.27 16 16 C -0.26 -14.78 9.58 84.03 0.81 -13.97 16 17 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16 18 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 19 N -0.93 -55.54 11.19 21.65 0.24 -55.30 16 20 Si 0.96 46.05 29.59 68.60 2.03 48.08 16 21 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 C 0.19 8.74 4.06 86.36 0.35 9.10 16 25 C -0.12 -2.16 5.05 30.66 0.15 -2.01 16 26 C 0.10 1.40 6.33 86.34 0.55 1.95 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.14 1.24 7.95 -2.39 -0.02 1.22 16 31 H 0.14 1.39 7.69 -2.40 -0.02 1.37 16 32 H 0.07 2.18 7.01 -2.39 -0.02 2.16 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.19 6.49 -2.39 -0.02 2.17 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.78 6.33 -2.38 -0.02 1.76 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.05 2.93 4.64 -2.39 -0.01 2.92 16 46 H 0.11 1.36 6.34 -2.38 -0.02 1.35 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.12 0.75 5.95 -2.39 -0.01 0.74 16 Total: -1.00 -76.14 381.16 3.47 -72.67 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.91 Total: 10.78 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 6.08 Total: 0.39 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.29 Total: -104.38 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.22 Total: -6.93 kcal Total: -76.14 3.47 -72.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961325238.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.010 kcal (2) G-P(sol) polarization free energy of solvation -76.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds