Wall clock time and date at job start Tue Mar 31 2020 14:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 103.00311 * 2 1 4 4 C 1.50702 * 109.47210 * 180.02562 * 3 2 1 5 5 O 1.21274 * 119.99773 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99734 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.62685 * 179.97438 * 6 4 3 8 8 C 1.53191 * 108.77836 * 233.63284 * 7 6 4 9 9 C 1.53043 * 109.31177 * 305.36582 * 8 7 6 10 10 C 1.53000 * 109.46299 * 181.38461 * 9 8 7 11 11 H 1.09002 * 109.52065 * 300.08348 * 10 9 8 12 12 C 1.53037 * 109.50173 * 180.02562 * 10 9 8 13 13 C 1.53040 * 109.53996 * 178.68314 * 12 10 9 14 14 C 1.53192 * 109.31213 * 61.36267 * 13 12 10 15 15 N 1.46926 * 108.77442 * 305.36385 * 14 13 12 16 16 C 1.36942 * 120.62987 * 233.58897 * 15 14 13 17 17 H 1.08005 * 119.99887 * 152.75826 * 16 15 14 18 18 C 1.38809 * 120.00054 * 332.47891 * 16 15 14 19 19 N 1.31615 * 120.00177 * 159.47749 * 18 16 15 20 20 Si 1.86803 * 119.99772 * 339.47837 * 18 16 15 21 21 H 1.48503 * 109.46973 * 92.87359 * 20 18 16 22 22 H 1.48498 * 109.46947 * 212.86977 * 20 18 16 23 23 H 1.48502 * 109.47287 * 332.86838 * 20 18 16 24 24 C 1.46925 * 118.73879 * 53.86150 * 15 14 13 25 25 C 1.53040 * 109.53673 * 61.36651 * 9 8 7 26 26 C 1.46922 * 120.63427 * 0.02562 * 6 4 3 27 27 H 1.09001 * 109.46727 * 59.99945 * 1 2 3 28 28 H 1.08991 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46729 * 300.00210 * 1 2 3 30 30 H 1.08998 * 109.47370 * 59.99617 * 3 2 1 31 31 H 1.09010 * 109.47075 * 300.00002 * 3 2 1 32 32 H 1.09002 * 109.58558 * 113.84446 * 7 6 4 33 33 H 1.09006 * 109.59137 * 353.42202 * 7 6 4 34 34 H 1.08996 * 109.50328 * 185.41858 * 8 7 6 35 35 H 1.08999 * 109.50157 * 65.31814 * 8 7 6 36 36 H 1.09001 * 109.46371 * 301.35727 * 9 8 7 37 37 H 1.08998 * 109.46447 * 58.65644 * 12 10 9 38 38 H 1.09005 * 109.45372 * 298.70104 * 12 10 9 39 39 H 1.08998 * 109.49398 * 301.41027 * 13 12 10 40 40 H 1.09000 * 109.51967 * 181.32820 * 13 12 10 41 41 H 1.08997 * 109.58759 * 185.57949 * 14 13 12 42 42 H 1.09000 * 109.58851 * 65.15084 * 14 13 12 43 43 H 0.97001 * 120.00300 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58872 * 65.93209 * 24 15 14 45 45 H 1.09003 * 109.58850 * 186.34966 * 24 15 14 46 46 H 1.09000 * 109.50408 * 58.58432 * 25 9 8 47 47 H 1.09000 * 109.49801 * 178.68514 * 25 9 8 48 48 H 1.09000 * 109.58748 * 246.15603 * 26 6 4 49 49 H 1.09010 * 109.58398 * 6.57906 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7196 1.9372 -0.0006 5 8 4.4404 0.9619 -0.0006 6 7 4.2577 3.1730 -0.0013 7 6 5.7156 3.3545 -0.0013 8 6 6.0987 4.2695 1.1661 9 6 5.3029 5.5732 1.0695 10 6 5.7081 6.5038 2.2145 11 1 5.4995 6.0196 3.1685 12 6 4.9124 7.8075 2.1192 13 6 5.2931 8.7258 3.2828 14 6 6.7850 9.0623 3.1954 15 7 7.5500 7.8092 3.1404 16 6 8.5660 7.5724 4.0276 17 1 8.8263 6.5582 4.2923 18 6 9.2649 8.6357 4.5822 19 7 9.9395 8.4684 5.6999 20 14 9.2480 10.3042 3.7423 21 1 8.1524 11.1319 4.3078 22 1 10.5487 10.9846 3.9669 23 1 9.0296 10.1225 2.2848 24 6 7.2084 6.8175 2.1115 25 6 3.8064 5.2677 1.1662 26 6 3.3975 4.3641 -0.0008 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8032 2.2371 0.8899 31 1 1.8032 2.2371 -0.8901 32 1 6.0269 3.8112 -0.9409 33 1 6.2044 2.3874 0.1168 34 1 7.1651 4.4901 1.1208 35 1 5.8693 3.7723 2.1085 36 1 5.5136 6.0576 0.1161 37 1 3.8460 7.5864 2.1649 38 1 5.1400 8.3036 1.1756 39 1 5.0887 8.2205 4.2267 40 1 4.7090 9.6444 3.2279 41 1 7.0828 9.6339 4.0744 42 1 6.9757 9.6467 2.2952 43 1 10.4283 9.2113 6.0873 44 1 7.4329 7.2224 1.1247 45 1 7.7855 5.9074 2.2752 46 1 3.5985 4.7610 2.1086 47 1 3.2414 6.1988 1.1208 48 1 3.5193 4.9032 -0.9402 49 1 2.3565 4.0629 0.1178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961325245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:19 Heat of formation + Delta-G solvation = -20.463903 kcal Electronic energy + Delta-G solvation = -26463.705388 eV Core-core repulsion = 22938.146238 eV Total energy + Delta-G solvation = -3525.559150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48726 -38.73580 -36.96427 -34.24800 -32.63289 -31.73117 -30.83015 -30.37912 -29.44072 -28.87501 -25.47261 -25.14649 -23.45483 -22.29029 -21.54361 -20.63433 -19.41829 -19.16698 -17.55760 -16.83619 -16.69996 -16.07926 -15.66307 -15.41344 -14.60502 -14.49296 -14.33421 -14.18239 -14.10113 -13.86538 -13.71177 -13.50379 -13.31519 -13.13305 -13.02473 -12.76560 -12.61918 -12.39602 -12.15470 -12.06338 -11.53438 -11.43885 -11.33381 -10.94257 -10.84043 -10.61747 -10.33628 -10.32086 -10.28317 -10.13816 -10.01709 -9.74448 -9.52993 -9.40896 -8.87289 -8.58520 -8.00349 -6.94977 -5.94309 -3.29691 1.09921 2.16692 2.31267 2.75288 3.31638 3.47986 3.50952 4.08113 4.48549 4.53329 4.54422 4.65442 4.71809 4.72702 4.73834 4.78273 4.92638 5.06273 5.10482 5.16032 5.29306 5.29508 5.36636 5.41830 5.51260 5.57338 5.58588 5.70625 5.77537 5.88824 5.91423 6.06270 6.10282 6.12835 6.19535 6.30364 6.34962 6.36353 6.42659 6.62171 6.66217 6.73730 6.75926 7.01261 7.08494 7.86150 7.97814 8.33711 8.95789 9.73345 10.11814 11.21791 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027895 B = 0.002449 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.511198 B =11429.838009 C =11831.236788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.186 6.186 3 C -0.126 4.126 4 C 0.531 3.469 5 O -0.521 6.521 6 N -0.606 5.606 7 C 0.113 3.887 8 C -0.131 4.131 9 C -0.079 4.079 10 C -0.099 4.099 11 H 0.070 0.930 12 C -0.104 4.104 13 C -0.136 4.136 14 C 0.125 3.875 15 N -0.606 5.606 16 C -0.258 4.258 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.272 1.272 24 C 0.155 3.845 25 C -0.132 4.132 26 C 0.106 3.894 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.020 0.980 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.678 -9.250 -14.009 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.038 5.962 3 C -0.277 4.277 4 C 0.317 3.683 5 O -0.397 6.397 6 N -0.340 5.340 7 C -0.009 4.009 8 C -0.169 4.169 9 C -0.098 4.098 10 C -0.119 4.119 11 H 0.089 0.911 12 C -0.142 4.142 13 C -0.175 4.175 14 C -0.001 4.001 15 N -0.330 5.330 16 C -0.386 4.386 17 H 0.102 0.898 18 C -0.177 4.177 19 N -0.552 5.552 20 Si 0.714 3.286 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.197 1.197 24 C 0.029 3.971 25 C -0.170 4.170 26 C -0.017 4.017 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.470 -10.587 -13.878 26.149 hybrid contribution -0.928 2.342 -0.305 2.537 sum -20.398 -8.245 -14.183 26.177 Atomic orbital electron populations 1.23538 0.95873 1.06788 1.04866 1.87588 1.04524 1.06099 1.97994 1.23569 0.98029 0.99240 1.06891 1.19611 0.88801 0.83181 0.76724 1.90748 1.61909 1.38029 1.49034 1.48059 1.07721 1.05125 1.73117 1.21709 0.78819 1.01456 0.98913 1.22036 1.01311 0.95293 0.98301 1.21139 0.93574 0.95365 0.99713 1.21758 0.98082 0.94510 0.97566 0.91113 1.21490 0.98265 0.95935 0.98493 1.22009 0.98318 0.98467 0.98682 1.21324 0.90097 0.89293 0.99348 1.44358 1.36831 1.16703 1.35062 1.18919 1.08358 0.94514 1.16842 0.89769 1.25291 0.97407 0.97832 0.97148 1.69838 1.35458 1.32051 1.17842 0.86941 0.75573 0.85171 0.80906 1.21714 1.23232 1.19671 1.21072 0.91882 0.93080 0.91072 1.22045 0.97452 0.99447 0.98051 1.21837 0.93884 0.86241 0.99752 0.90527 0.87727 0.90453 0.87179 0.87328 0.91341 0.88930 0.89665 0.91350 0.91153 0.93025 0.92828 0.91893 0.93068 0.91180 0.95983 0.92812 0.96202 0.91887 0.91401 0.90160 0.90976 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 10.76 101.05 1.09 0.31 16 2 S -0.19 -1.84 21.52 -107.50 -2.31 -4.15 16 3 C -0.13 -1.02 4.77 36.01 0.17 -0.85 16 4 C 0.53 6.13 7.72 -10.98 -0.08 6.05 16 5 O -0.52 -8.18 15.28 5.56 0.08 -8.09 16 6 N -0.61 -6.05 2.97 -172.79 -0.51 -6.56 16 7 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 8 C -0.13 -1.51 5.06 -26.61 -0.13 -1.65 16 9 C -0.08 -0.87 1.74 -90.58 -0.16 -1.03 16 10 C -0.10 -1.45 1.94 -90.28 -0.17 -1.63 16 11 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.10 -1.47 4.85 -26.69 -0.13 -1.60 16 13 C -0.14 -2.31 6.08 -26.61 -0.16 -2.48 16 14 C 0.12 2.69 4.20 -3.71 -0.02 2.67 16 15 N -0.61 -14.16 2.76 -172.06 -0.48 -14.64 16 16 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 17 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 18 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 19 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16 20 Si 0.88 22.45 24.34 -169.99 -4.14 18.31 16 21 H -0.29 -7.09 6.62 56.52 0.37 -6.72 16 22 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 23 H -0.27 -6.78 6.63 56.52 0.37 -6.40 16 24 C 0.15 2.89 5.30 -3.49 -0.02 2.87 16 25 C -0.13 -1.15 5.04 -26.63 -0.13 -1.29 16 26 C 0.11 0.77 6.34 -3.73 -0.02 0.74 16 27 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.11 0.70 7.69 -51.92 -0.40 0.30 16 31 H 0.11 0.62 7.94 -51.92 -0.41 0.21 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.14 7.01 -51.93 -0.36 0.77 16 34 H 0.08 1.03 6.49 -51.93 -0.34 0.70 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.60 6.33 -51.93 -0.33 0.27 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.67 4.51 -51.93 -0.23 1.44 16 42 H 0.02 0.47 7.07 -51.93 -0.37 0.11 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.63 6.33 -51.93 -0.33 0.31 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.40 5.93 -51.92 -0.31 0.09 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -33.51 374.73 -9.50 -43.01 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.53 Total: -2.89 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.04 Total: -3.46 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.21 Total: -48.37 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.09 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.31 Total: -4.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.51 -9.50 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961325245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.550 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds