Wall clock time and date at job start Tue Mar 31 2020 14:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 103.00311 * 2 1 4 4 C 1.50702 * 109.47210 * 180.02562 * 3 2 1 5 5 O 1.21274 * 119.99773 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99734 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.62685 * 179.97438 * 6 4 3 8 8 C 1.53191 * 108.77836 * 233.63284 * 7 6 4 9 9 C 1.53043 * 109.31177 * 305.36582 * 8 7 6 10 10 C 1.53000 * 109.46299 * 181.38461 * 9 8 7 11 11 H 1.09002 * 109.52065 * 300.08348 * 10 9 8 12 12 C 1.53037 * 109.50173 * 180.02562 * 10 9 8 13 13 C 1.53040 * 109.53996 * 178.68314 * 12 10 9 14 14 C 1.53192 * 109.31213 * 61.36267 * 13 12 10 15 15 N 1.46926 * 108.77442 * 305.36385 * 14 13 12 16 16 C 1.36942 * 120.62987 * 233.58897 * 15 14 13 17 17 H 1.08005 * 119.99887 * 152.75826 * 16 15 14 18 18 C 1.38809 * 120.00054 * 332.47891 * 16 15 14 19 19 N 1.31615 * 120.00177 * 159.47749 * 18 16 15 20 20 Si 1.86803 * 119.99772 * 339.47837 * 18 16 15 21 21 H 1.48503 * 109.46973 * 92.87359 * 20 18 16 22 22 H 1.48498 * 109.46947 * 212.86977 * 20 18 16 23 23 H 1.48502 * 109.47287 * 332.86838 * 20 18 16 24 24 C 1.46925 * 118.73879 * 53.86150 * 15 14 13 25 25 C 1.53040 * 109.53673 * 61.36651 * 9 8 7 26 26 C 1.46922 * 120.63427 * 0.02562 * 6 4 3 27 27 H 1.09001 * 109.46727 * 59.99945 * 1 2 3 28 28 H 1.08991 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46729 * 300.00210 * 1 2 3 30 30 H 1.08998 * 109.47370 * 59.99617 * 3 2 1 31 31 H 1.09010 * 109.47075 * 300.00002 * 3 2 1 32 32 H 1.09002 * 109.58558 * 113.84446 * 7 6 4 33 33 H 1.09006 * 109.59137 * 353.42202 * 7 6 4 34 34 H 1.08996 * 109.50328 * 185.41858 * 8 7 6 35 35 H 1.08999 * 109.50157 * 65.31814 * 8 7 6 36 36 H 1.09001 * 109.46371 * 301.35727 * 9 8 7 37 37 H 1.08998 * 109.46447 * 58.65644 * 12 10 9 38 38 H 1.09005 * 109.45372 * 298.70104 * 12 10 9 39 39 H 1.08998 * 109.49398 * 301.41027 * 13 12 10 40 40 H 1.09000 * 109.51967 * 181.32820 * 13 12 10 41 41 H 1.08997 * 109.58759 * 185.57949 * 14 13 12 42 42 H 1.09000 * 109.58851 * 65.15084 * 14 13 12 43 43 H 0.97001 * 120.00300 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58872 * 65.93209 * 24 15 14 45 45 H 1.09003 * 109.58850 * 186.34966 * 24 15 14 46 46 H 1.09000 * 109.50408 * 58.58432 * 25 9 8 47 47 H 1.09000 * 109.49801 * 178.68514 * 25 9 8 48 48 H 1.09000 * 109.58748 * 246.15603 * 26 6 4 49 49 H 1.09010 * 109.58398 * 6.57906 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7196 1.9372 -0.0006 5 8 4.4404 0.9619 -0.0006 6 7 4.2577 3.1730 -0.0013 7 6 5.7156 3.3545 -0.0013 8 6 6.0987 4.2695 1.1661 9 6 5.3029 5.5732 1.0695 10 6 5.7081 6.5038 2.2145 11 1 5.4995 6.0196 3.1685 12 6 4.9124 7.8075 2.1192 13 6 5.2931 8.7258 3.2828 14 6 6.7850 9.0623 3.1954 15 7 7.5500 7.8092 3.1404 16 6 8.5660 7.5724 4.0276 17 1 8.8263 6.5582 4.2923 18 6 9.2649 8.6357 4.5822 19 7 9.9395 8.4684 5.6999 20 14 9.2480 10.3042 3.7423 21 1 8.1524 11.1319 4.3078 22 1 10.5487 10.9846 3.9669 23 1 9.0296 10.1225 2.2848 24 6 7.2084 6.8175 2.1115 25 6 3.8064 5.2677 1.1662 26 6 3.3975 4.3641 -0.0008 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8032 2.2371 0.8899 31 1 1.8032 2.2371 -0.8901 32 1 6.0269 3.8112 -0.9409 33 1 6.2044 2.3874 0.1168 34 1 7.1651 4.4901 1.1208 35 1 5.8693 3.7723 2.1085 36 1 5.5136 6.0576 0.1161 37 1 3.8460 7.5864 2.1649 38 1 5.1400 8.3036 1.1756 39 1 5.0887 8.2205 4.2267 40 1 4.7090 9.6444 3.2279 41 1 7.0828 9.6339 4.0744 42 1 6.9757 9.6467 2.2952 43 1 10.4283 9.2113 6.0873 44 1 7.4329 7.2224 1.1247 45 1 7.7855 5.9074 2.2752 46 1 3.5985 4.7610 2.1086 47 1 3.2414 6.1988 1.1208 48 1 3.5193 4.9032 -0.9402 49 1 2.3565 4.0629 0.1178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961325245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:19 Heat of formation + Delta-G solvation = -41.662936 kcal Electronic energy + Delta-G solvation = -26464.624647 eV Core-core repulsion = 22938.146238 eV Total energy + Delta-G solvation = -3526.478409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34897 -39.94547 -38.15777 -35.60007 -34.13890 -32.94104 -32.27461 -31.35855 -30.29086 -29.47058 -27.20885 -26.21832 -24.54932 -23.51104 -22.99029 -21.70168 -20.68744 -20.05746 -18.76567 -18.28080 -17.59214 -17.31498 -16.81877 -16.42495 -16.00486 -15.59021 -15.44792 -15.16986 -14.98210 -14.88421 -14.70026 -14.53105 -14.42864 -14.37615 -14.08759 -13.82250 -13.63783 -13.41273 -13.28406 -13.21744 -12.92564 -12.82934 -12.50987 -12.33876 -12.15263 -11.86111 -11.72412 -11.64639 -11.49492 -11.36641 -11.18464 -10.99471 -10.86845 -10.79447 -10.57654 -9.68595 -8.88750 -8.71121 -8.17635 -5.48363 0.50626 1.27957 1.39229 1.48874 1.49478 1.64840 2.00712 2.40581 3.05463 3.35419 3.40849 3.74130 3.79925 3.90351 4.04375 4.14299 4.17371 4.20259 4.22265 4.26344 4.39343 4.39771 4.42099 4.47705 4.49842 4.56745 4.68361 4.75147 4.80001 4.84130 4.89578 4.94062 4.97481 5.04011 5.07597 5.11106 5.16943 5.19812 5.27548 5.35139 5.41048 5.51130 5.59432 5.71989 5.86840 6.11805 6.32259 6.93640 7.05335 7.64273 8.04345 9.02674 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.027895 B = 0.002449 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.511198 B =11429.838009 C =11831.236788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.278 6.278 3 C -0.105 4.105 4 C 0.521 3.479 5 O -0.575 6.575 6 N -0.603 5.603 7 C 0.117 3.883 8 C -0.127 4.127 9 C -0.070 4.070 10 C -0.088 4.088 11 H 0.046 0.954 12 C -0.098 4.098 13 C -0.131 4.131 14 C 0.116 3.884 15 N -0.623 5.623 16 C -0.246 4.246 17 H 0.045 0.955 18 C -0.040 4.040 19 N -0.960 5.960 20 Si 0.952 3.048 21 H -0.274 1.274 22 H -0.312 1.312 23 H -0.261 1.261 24 C 0.149 3.851 25 C -0.127 4.127 26 C 0.104 3.896 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.033 0.967 43 H 0.261 0.739 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.056 0.944 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.924 -7.301 -16.808 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.054 6.054 3 C -0.256 4.256 4 C 0.309 3.691 5 O -0.455 6.455 6 N -0.337 5.337 7 C -0.005 4.005 8 C -0.165 4.165 9 C -0.089 4.089 10 C -0.108 4.108 11 H 0.065 0.935 12 C -0.135 4.135 13 C -0.170 4.170 14 C -0.008 4.008 15 N -0.347 5.347 16 C -0.376 4.376 17 H 0.063 0.937 18 C -0.235 4.235 19 N -0.606 5.606 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.241 1.241 23 H -0.185 1.185 24 C 0.024 3.976 25 C -0.165 4.165 26 C -0.017 4.017 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.122 0.878 48 H 0.112 0.888 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.782 -8.615 -16.717 30.319 hybrid contribution 0.395 1.641 0.599 1.791 sum -23.387 -6.973 -16.118 29.247 Atomic orbital electron populations 1.23539 0.91148 1.07655 1.06377 1.87946 1.09802 1.09403 1.98273 1.23507 0.95229 0.97394 1.09440 1.20284 0.90276 0.82827 0.75736 1.90729 1.63444 1.39845 1.51455 1.48178 1.07512 1.05849 1.72113 1.21556 0.79873 0.99993 0.99102 1.21944 1.00789 0.96061 0.97708 1.21067 0.95451 0.93717 0.98628 1.21578 0.95059 0.96071 0.98072 0.93519 1.21499 1.00145 0.94252 0.97637 1.21945 0.95125 1.00494 0.99413 1.21428 0.92911 0.88136 0.98347 1.44520 1.36254 1.18406 1.35534 1.18843 1.09091 0.92876 1.16811 0.93682 1.25964 0.97864 1.01933 0.97714 1.69981 1.37640 1.33320 1.19693 0.85827 0.75370 0.80588 0.80125 1.20078 1.24144 1.18493 1.21281 0.94800 0.91320 0.90151 1.22016 0.95267 1.00819 0.98359 1.22114 0.94846 0.84793 0.99995 0.88723 0.87241 0.89091 0.84818 0.84100 0.89583 0.91420 0.91096 0.93547 0.89496 0.89243 0.91293 0.93568 0.90079 0.94034 0.94963 0.93033 0.94895 0.93616 0.92509 0.87791 0.88781 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.76 113.37 1.22 0.26 16 2 S -0.28 -5.22 21.52 -56.49 -1.22 -6.44 16 3 C -0.11 -1.39 4.77 71.24 0.34 -1.05 16 4 C 0.52 11.34 7.72 87.66 0.68 12.01 16 5 O -0.58 -18.57 15.28 -3.01 -0.05 -18.62 16 6 N -0.60 -10.62 2.97 -818.97 -2.43 -13.06 16 7 C 0.12 2.44 6.43 86.36 0.56 3.00 16 8 C -0.13 -2.90 5.06 30.67 0.16 -2.74 16 9 C -0.07 -1.34 1.74 -10.77 -0.02 -1.35 16 10 C -0.09 -2.40 1.94 -10.57 -0.02 -2.42 16 11 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 12 C -0.10 -2.31 4.85 30.62 0.15 -2.16 16 13 C -0.13 -4.06 6.08 30.67 0.19 -3.87 16 14 C 0.12 4.82 4.20 86.36 0.36 5.18 16 15 N -0.62 -29.20 2.76 -698.26 -1.93 -31.13 16 16 C -0.25 -14.27 10.03 84.03 0.84 -13.43 16 17 H 0.05 2.89 8.06 -2.91 -0.02 2.86 16 18 C -0.04 -2.41 5.23 84.86 0.44 -1.97 16 19 N -0.96 -61.64 13.97 21.65 0.30 -61.34 16 20 Si 0.95 47.23 24.34 68.60 1.67 48.90 16 21 H -0.27 -12.79 6.62 99.48 0.66 -12.13 16 22 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 23 H -0.26 -12.27 6.63 99.48 0.66 -11.61 16 24 C 0.15 5.50 5.30 86.51 0.46 5.96 16 25 C -0.13 -1.63 5.04 30.66 0.15 -1.48 16 26 C 0.10 0.98 6.34 86.35 0.55 1.52 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.11 0.79 8.14 -2.40 -0.02 0.77 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.13 1.12 7.69 -2.39 -0.02 1.11 16 31 H 0.14 0.94 7.94 -2.39 -0.02 0.92 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.76 7.01 -2.38 -0.02 1.74 16 34 H 0.07 1.79 6.49 -2.39 -0.02 1.78 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.52 6.33 -2.39 -0.02 1.50 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.94 4.51 -2.39 -0.01 1.93 16 42 H 0.03 1.28 7.07 -2.39 -0.02 1.26 16 43 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.80 6.52 -2.39 -0.02 1.79 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 0.93 6.33 -2.39 -0.02 0.92 16 48 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.41 5.93 -2.38 -0.01 0.40 16 Total: -1.00 -79.95 374.73 3.22 -76.73 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.82 Total: 7.48 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 6.05 Total: -2.54 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -4.06 Total: -105.52 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.62 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.67 Total: 48.90 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -1.22 Total: -6.44 kcal Total: -79.95 3.22 -76.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961325245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.064 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds