Wall clock time and date at job start Tue Mar 31 2020 14:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99597 * 2 1 4 4 H 1.08000 * 119.99564 * 201.71515 * 3 2 1 5 5 C 1.38809 * 120.00272 * 21.72330 * 3 2 1 6 6 N 1.31617 * 120.00151 * 13.64911 * 5 3 2 7 7 Si 1.86801 * 119.99985 * 193.65126 * 5 3 2 8 8 H 1.48499 * 109.47009 * 59.99544 * 7 5 3 9 9 H 1.48496 * 109.47311 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46904 * 299.99833 * 7 5 3 11 11 C 1.46497 * 120.00179 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64240 * 176.86388 * 11 2 1 13 13 C 1.55155 * 110.87237 * 53.60817 * 11 2 1 14 14 C 1.55124 * 101.48596 * 205.89780 * 13 11 2 15 15 N 1.47425 * 104.72292 * 37.30193 * 14 13 11 16 16 C 1.34771 * 125.65230 * 155.81679 * 15 14 13 17 17 O 1.21276 * 120.00575 * 179.69025 * 16 15 14 18 18 C 1.50707 * 120.00055 * 359.95946 * 16 15 14 19 19 H 1.09004 * 115.54083 * 325.31673 * 18 16 15 20 20 C 1.53037 * 117.48449 * 179.71904 * 18 16 15 21 21 H 1.09002 * 119.41309 * 140.82737 * 20 18 16 22 22 C 1.53440 * 118.58182 * 345.16934 * 20 18 16 23 23 C 1.50967 * 107.03491 * 297.02565 * 22 20 18 24 24 C 1.38794 * 129.71897 * 179.64333 * 23 22 20 25 25 C 1.38017 * 120.30814 * 180.02562 * 24 23 22 26 26 C 1.38244 * 119.87962 * 0.03721 * 25 24 23 27 27 C 1.38022 * 119.88796 * 359.97438 * 26 25 24 28 28 C 1.37807 * 110.46473 * 359.68051 * 23 22 20 29 29 C 1.52964 * 117.47624 * 110.89592 * 18 16 15 30 30 H 1.08999 * 118.97705 * 218.38228 * 29 18 16 31 31 C 1.47024 * 108.69970 * 335.54947 * 15 14 13 32 32 H 1.09000 * 109.47565 * 274.46446 * 1 2 3 33 33 H 1.09011 * 109.47081 * 34.46356 * 1 2 3 34 34 H 1.08998 * 109.46859 * 154.45426 * 1 2 3 35 35 H 0.96999 * 120.00072 * 180.02562 * 6 5 3 36 36 H 1.08994 * 111.00546 * 324.14384 * 13 11 2 37 37 H 1.09007 * 110.99767 * 87.95408 * 13 11 2 38 38 H 1.08999 * 110.50428 * 278.45879 * 14 13 11 39 39 H 1.09004 * 110.33973 * 156.05939 * 14 13 11 40 40 H 1.08996 * 109.91904 * 56.37151 * 22 20 18 41 41 H 1.08998 * 109.92195 * 177.47701 * 22 20 18 42 42 H 1.07993 * 119.84356 * 0.04110 * 24 23 22 43 43 H 1.07999 * 120.05892 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.05576 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.84146 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.88245 * 120.71125 * 31 15 14 47 47 H 1.09007 * 109.88166 * 241.71452 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1721 1.2192 -0.3461 5 6 1.5295 2.3454 0.4449 6 7 0.3965 2.2719 1.1107 7 14 2.3029 4.0102 0.0987 8 1 2.4197 4.2061 -1.3687 9 1 1.4506 5.0813 0.6744 10 1 3.6530 4.0664 0.7145 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 -0.0553 13 6 1.7290 -2.1780 -1.1660 14 6 2.0622 -3.5880 -0.6116 15 7 1.7543 -3.5069 0.8279 16 6 1.4461 -4.5489 1.6251 17 8 1.2153 -4.3650 2.8014 18 6 1.3943 -5.9435 1.0563 19 1 1.0332 -6.0196 0.0306 20 6 1.0449 -7.0845 2.0144 21 1 0.3996 -7.8932 1.6711 22 6 1.1078 -6.8203 3.5246 23 6 2.5435 -6.4922 3.8567 24 6 3.1204 -6.1719 5.0777 25 6 4.4715 -5.9025 5.1604 26 6 5.2543 -5.9510 4.0220 27 6 4.6822 -6.2692 2.8069 28 6 3.3238 -6.5411 2.7220 29 6 2.4805 -6.9262 1.4969 30 1 2.8902 -7.6231 0.7657 31 6 1.8454 -2.1018 1.2510 32 1 -0.3634 0.0800 1.0245 33 1 -0.3634 0.8474 -0.5816 34 1 -0.3633 -0.9272 -0.4432 35 1 -0.0370 3.0821 1.4213 36 1 0.6593 -2.0667 -1.3428 37 1 2.2965 -1.9723 -2.0737 38 1 3.1171 -3.8177 -0.7615 39 1 1.4371 -4.3412 -1.0913 40 1 0.4654 -5.9780 3.7812 41 1 0.7908 -7.7088 4.0706 42 1 2.5093 -6.1335 5.9673 43 1 4.9163 -5.6540 6.1126 44 1 6.3119 -5.7411 4.0834 45 1 5.2946 -6.3073 1.9181 46 1 0.8885 -1.7743 1.6574 47 1 2.6253 -1.9914 2.0045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972495042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:54 Heat of formation + Delta-G solvation = 63.829892 kcal Electronic energy + Delta-G solvation = -28047.711172 eV Core-core repulsion = 24390.363324 eV Total energy + Delta-G solvation = -3657.347848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.19852 -39.16810 -37.61976 -36.34973 -34.75261 -31.98217 -31.44909 -30.50058 -29.65727 -28.15983 -27.56479 -26.05025 -24.81027 -23.15727 -22.39938 -22.05697 -20.98951 -20.44210 -19.17643 -18.46736 -17.31954 -16.98527 -16.08150 -15.87264 -15.54031 -15.20975 -14.87117 -14.48089 -14.36813 -13.92142 -13.52285 -13.37091 -13.24281 -13.18060 -12.73497 -12.59746 -12.35426 -12.26805 -12.06737 -11.84230 -11.80618 -11.48053 -11.23995 -10.90846 -10.81796 -10.79488 -10.65162 -10.55643 -10.43238 -10.34937 -10.26447 -9.87307 -9.81513 -9.25307 -8.68565 -8.56897 -8.50256 -8.15872 -6.82543 -5.75814 -3.22388 1.35376 1.46918 2.71767 3.24358 3.37988 3.43431 3.44230 3.54921 3.87824 4.20641 4.45942 4.46316 4.62199 4.81520 4.87090 4.98019 5.03110 5.03448 5.10890 5.24791 5.29469 5.37293 5.44196 5.53766 5.56548 5.61459 5.71730 5.75223 5.81550 5.83695 5.91392 5.97278 6.02550 6.12719 6.28761 6.35849 6.39494 6.46794 6.54315 6.58706 6.69471 6.73306 6.84650 6.89157 7.04062 7.34480 7.70895 7.78017 7.91590 8.34572 8.52543 9.18868 9.81549 10.30132 11.28819 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.003144 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.676186 B = 8903.713066 C = 9485.475280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.077 0.923 13 C -0.154 4.154 14 C 0.104 3.896 15 N -0.609 5.609 16 C 0.551 3.449 17 O -0.533 6.533 18 C -0.154 4.154 19 H 0.130 0.870 20 C -0.125 4.125 21 H 0.128 0.872 22 C -0.060 4.060 23 C -0.052 4.052 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.131 4.131 27 C -0.098 4.098 28 C -0.083 4.083 29 C -0.094 4.094 30 H 0.128 0.872 31 C 0.090 3.910 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.002 0.998 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.071 0.929 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -21.434 -0.094 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.095 0.905 13 C -0.193 4.193 14 C -0.020 4.020 15 N -0.342 5.342 16 C 0.339 3.661 17 O -0.411 6.411 18 C -0.175 4.175 19 H 0.148 0.852 20 C -0.143 4.143 21 H 0.145 0.855 22 C -0.096 4.096 23 C -0.052 4.052 24 C -0.128 4.128 25 C -0.132 4.132 26 C -0.149 4.149 27 C -0.116 4.116 28 C -0.083 4.083 29 C -0.113 4.113 30 H 0.145 0.855 31 C -0.035 4.035 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.165 -21.192 0.673 21.608 hybrid contribution 0.411 1.061 -0.264 1.168 sum 4.577 -20.131 0.409 20.649 Atomic orbital electron populations 1.20799 0.82415 0.95684 0.99459 1.43920 1.01907 0.99899 1.84867 1.19193 0.97865 0.85021 1.37114 0.91198 1.25024 0.97793 0.98566 0.97993 1.70075 1.18801 1.27284 1.38692 0.86306 0.78455 0.83606 0.77981 1.21015 1.21608 1.20872 1.21337 0.96302 0.85950 0.90150 0.90512 1.23376 1.02734 0.93372 0.99866 1.22331 0.99910 0.98819 0.80932 1.48496 1.67997 1.07768 1.09986 1.19211 0.76950 0.84386 0.85555 1.90646 1.49831 1.84850 1.15754 1.22381 1.04694 0.89939 1.00524 0.85203 1.22893 0.98299 0.99029 0.94089 0.85466 1.20424 0.94124 1.02451 0.92640 1.20262 0.95166 0.96732 0.93076 1.20587 0.94847 1.00586 0.96766 1.20994 0.93789 0.99946 0.98501 1.20939 0.99755 1.01579 0.92603 1.20624 0.93629 0.99625 0.97742 1.20117 0.93352 1.01483 0.93358 1.22037 0.89937 1.00947 0.98364 0.85469 1.22887 1.02131 0.78642 0.99833 0.95210 0.93638 0.97988 0.93571 0.90388 0.90488 0.91753 0.91519 0.87249 0.90643 0.86379 0.86087 0.86096 0.86526 0.91065 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 7.82 59.85 0.47 4.39 16 2 N -0.59 -14.38 2.93 -171.39 -0.50 -14.88 16 3 C -0.26 -7.09 9.63 -15.06 -0.14 -7.24 16 4 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -26.32 10.67 55.49 0.59 -25.72 16 7 Si 0.91 21.66 29.58 -169.99 -5.03 16.63 16 8 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.17 3.46 3.43 -66.10 -0.23 3.23 16 12 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 13 C -0.15 -2.42 6.61 -24.47 -0.16 -2.58 16 14 C 0.10 1.38 6.70 -2.41 -0.02 1.36 16 15 N -0.61 -10.20 3.32 -170.38 -0.57 -10.76 16 16 C 0.55 9.16 6.89 -10.98 -0.08 9.08 16 17 O -0.53 -10.56 12.76 5.56 0.07 -10.48 16 18 C -0.15 -1.86 5.52 -91.77 -0.51 -2.36 16 19 H 0.13 1.23 7.08 -51.93 -0.37 0.86 16 20 C -0.12 -1.34 7.00 -90.16 -0.63 -1.97 16 21 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 22 C -0.06 -0.75 5.77 -27.52 -0.16 -0.90 16 23 C -0.05 -0.73 4.78 -104.44 -0.50 -1.23 16 24 C -0.11 -1.46 10.04 -39.46 -0.40 -1.86 16 25 C -0.11 -1.40 10.05 -39.66 -0.40 -1.80 16 26 C -0.13 -1.58 10.04 -39.66 -0.40 -1.98 16 27 C -0.10 -1.24 10.04 -39.46 -0.40 -1.63 16 28 C -0.08 -1.11 5.25 -103.09 -0.54 -1.65 16 29 C -0.09 -1.04 7.09 -90.09 -0.64 -1.67 16 30 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 31 C 0.09 1.80 6.51 -3.06 -0.02 1.78 16 32 H 0.03 0.80 7.33 -51.93 -0.38 0.42 16 33 H 0.04 1.19 7.23 -51.92 -0.38 0.81 16 34 H 0.00 0.04 6.04 -51.93 -0.31 -0.28 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.08 1.31 6.07 -51.93 -0.32 0.99 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.72 7.01 -51.93 -0.36 0.35 16 40 H 0.11 1.63 6.27 -51.93 -0.33 1.30 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.07 1.64 7.11 -51.93 -0.37 1.27 16 47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -32.30 368.11 -11.71 -44.01 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.00 Total: 2.63 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -4.83 Total: -6.96 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.48 Total: -51.37 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.30 -11.71 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972495042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.838 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds