Wall clock time and date at job start Tue Mar 31 2020 14:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 119.99597 * 2 1 4 4 H 1.08000 * 119.99564 * 201.71515 * 3 2 1 5 5 C 1.38809 * 120.00272 * 21.72330 * 3 2 1 6 6 N 1.31617 * 120.00151 * 13.64911 * 5 3 2 7 7 Si 1.86801 * 119.99985 * 193.65126 * 5 3 2 8 8 H 1.48499 * 109.47009 * 59.99544 * 7 5 3 9 9 H 1.48496 * 109.47311 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46904 * 299.99833 * 7 5 3 11 11 C 1.46497 * 120.00179 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.64240 * 176.86388 * 11 2 1 13 13 C 1.55155 * 110.87237 * 53.60817 * 11 2 1 14 14 C 1.55124 * 101.48596 * 205.89780 * 13 11 2 15 15 N 1.47425 * 104.72292 * 37.30193 * 14 13 11 16 16 C 1.34771 * 125.65230 * 155.81679 * 15 14 13 17 17 O 1.21276 * 120.00575 * 179.69025 * 16 15 14 18 18 C 1.50707 * 120.00055 * 359.95946 * 16 15 14 19 19 H 1.09004 * 115.54083 * 325.31673 * 18 16 15 20 20 C 1.53037 * 117.48449 * 179.71904 * 18 16 15 21 21 H 1.09002 * 119.41309 * 140.82737 * 20 18 16 22 22 C 1.53440 * 118.58182 * 345.16934 * 20 18 16 23 23 C 1.50967 * 107.03491 * 297.02565 * 22 20 18 24 24 C 1.38794 * 129.71897 * 179.64333 * 23 22 20 25 25 C 1.38017 * 120.30814 * 180.02562 * 24 23 22 26 26 C 1.38244 * 119.87962 * 0.03721 * 25 24 23 27 27 C 1.38022 * 119.88796 * 359.97438 * 26 25 24 28 28 C 1.37807 * 110.46473 * 359.68051 * 23 22 20 29 29 C 1.52964 * 117.47624 * 110.89592 * 18 16 15 30 30 H 1.08999 * 118.97705 * 218.38228 * 29 18 16 31 31 C 1.47024 * 108.69970 * 335.54947 * 15 14 13 32 32 H 1.09000 * 109.47565 * 274.46446 * 1 2 3 33 33 H 1.09011 * 109.47081 * 34.46356 * 1 2 3 34 34 H 1.08998 * 109.46859 * 154.45426 * 1 2 3 35 35 H 0.96999 * 120.00072 * 180.02562 * 6 5 3 36 36 H 1.08994 * 111.00546 * 324.14384 * 13 11 2 37 37 H 1.09007 * 110.99767 * 87.95408 * 13 11 2 38 38 H 1.08999 * 110.50428 * 278.45879 * 14 13 11 39 39 H 1.09004 * 110.33973 * 156.05939 * 14 13 11 40 40 H 1.08996 * 109.91904 * 56.37151 * 22 20 18 41 41 H 1.08998 * 109.92195 * 177.47701 * 22 20 18 42 42 H 1.07993 * 119.84356 * 0.04110 * 24 23 22 43 43 H 1.07999 * 120.05892 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.05576 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.84146 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.88245 * 120.71125 * 31 15 14 47 47 H 1.09007 * 109.88166 * 241.71452 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1721 1.2192 -0.3461 5 6 1.5295 2.3454 0.4449 6 7 0.3965 2.2719 1.1107 7 14 2.3029 4.0102 0.0987 8 1 2.4197 4.2061 -1.3687 9 1 1.4506 5.0813 0.6744 10 1 3.6530 4.0664 0.7145 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 -0.0553 13 6 1.7290 -2.1780 -1.1660 14 6 2.0622 -3.5880 -0.6116 15 7 1.7543 -3.5069 0.8279 16 6 1.4461 -4.5489 1.6251 17 8 1.2153 -4.3650 2.8014 18 6 1.3943 -5.9435 1.0563 19 1 1.0332 -6.0196 0.0306 20 6 1.0449 -7.0845 2.0144 21 1 0.3996 -7.8932 1.6711 22 6 1.1078 -6.8203 3.5246 23 6 2.5435 -6.4922 3.8567 24 6 3.1204 -6.1719 5.0777 25 6 4.4715 -5.9025 5.1604 26 6 5.2543 -5.9510 4.0220 27 6 4.6822 -6.2692 2.8069 28 6 3.3238 -6.5411 2.7220 29 6 2.4805 -6.9262 1.4969 30 1 2.8902 -7.6231 0.7657 31 6 1.8454 -2.1018 1.2510 32 1 -0.3634 0.0800 1.0245 33 1 -0.3634 0.8474 -0.5816 34 1 -0.3633 -0.9272 -0.4432 35 1 -0.0370 3.0821 1.4213 36 1 0.6593 -2.0667 -1.3428 37 1 2.2965 -1.9723 -2.0737 38 1 3.1171 -3.8177 -0.7615 39 1 1.4371 -4.3412 -1.0913 40 1 0.4654 -5.9780 3.7812 41 1 0.7908 -7.7088 4.0706 42 1 2.5093 -6.1335 5.9673 43 1 4.9163 -5.6540 6.1126 44 1 6.3119 -5.7411 4.0834 45 1 5.2946 -6.3073 1.9181 46 1 0.8885 -1.7743 1.6574 47 1 2.6253 -1.9914 2.0045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972495042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:53 Heat of formation + Delta-G solvation = 46.478780 kcal Electronic energy + Delta-G solvation = -28048.463573 eV Core-core repulsion = 24390.363324 eV Total energy + Delta-G solvation = -3658.100249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18833 -40.43873 -38.89960 -37.48929 -36.50033 -33.54301 -32.67483 -31.52362 -31.10532 -29.61605 -28.55032 -28.08901 -26.13017 -24.49911 -23.85709 -23.08628 -21.99696 -21.29220 -20.82262 -19.65164 -18.97655 -18.34520 -17.38752 -17.07149 -16.77422 -16.52415 -16.15957 -15.72719 -15.52699 -15.33185 -14.99739 -14.82599 -14.41906 -14.36136 -14.17916 -13.98182 -13.64644 -13.44932 -13.34243 -13.19394 -13.02682 -12.72074 -12.69346 -12.52107 -12.41552 -12.23638 -12.16589 -12.11414 -11.81961 -11.73998 -11.53109 -11.43897 -11.17706 -10.64096 -10.47111 -9.65601 -9.64710 -9.33055 -8.85107 -7.85437 -5.34681 0.40302 0.50798 1.46700 1.48930 1.55743 1.56440 1.99735 2.50393 2.59874 2.96296 3.26509 3.30946 3.54717 3.58513 3.65624 3.83995 3.91377 3.98848 4.10771 4.14383 4.16862 4.23690 4.27204 4.36404 4.46731 4.52582 4.59155 4.68805 4.70753 4.78307 4.81536 4.89647 4.90781 4.98535 5.03856 5.07985 5.18060 5.20107 5.26910 5.32781 5.37840 5.44024 5.53542 5.59756 5.61814 5.67530 5.75002 6.12487 6.28635 6.65955 7.10587 7.25985 7.81988 8.26344 9.17793 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.003144 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.676186 B = 8903.713066 C = 9485.475280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.269 4.269 4 H 0.079 0.921 5 C -0.053 4.053 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.273 1.273 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.166 3.834 12 H 0.078 0.922 13 C -0.139 4.139 14 C 0.108 3.892 15 N -0.612 5.612 16 C 0.539 3.461 17 O -0.577 6.577 18 C -0.158 4.158 19 H 0.168 0.832 20 C -0.120 4.120 21 H 0.166 0.834 22 C -0.064 4.064 23 C -0.077 4.077 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.110 4.110 28 C -0.103 4.103 29 C -0.081 4.081 30 H 0.166 0.834 31 C 0.104 3.896 32 H -0.008 1.008 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.248 0.752 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.030 0.970 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -24.028 -2.989 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.399 4.399 4 H 0.096 0.904 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.199 1.199 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.057 3.943 12 H 0.096 0.904 13 C -0.179 4.179 14 C -0.013 4.013 15 N -0.345 5.345 16 C 0.330 3.670 17 O -0.457 6.457 18 C -0.178 4.178 19 H 0.185 0.815 20 C -0.138 4.138 21 H 0.183 0.817 22 C -0.101 4.101 23 C -0.077 4.077 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.159 4.159 27 C -0.128 4.128 28 C -0.103 4.103 29 C -0.099 4.099 30 H 0.183 0.817 31 C -0.022 4.022 32 H 0.010 0.990 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.048 0.952 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.640 -23.839 -2.261 24.601 hybrid contribution 0.009 1.830 0.758 1.980 sum 5.649 -22.009 -1.503 22.772 Atomic orbital electron populations 1.20445 0.82873 0.96081 0.96944 1.44119 1.01962 1.01067 1.85124 1.19618 0.98238 0.86138 1.35941 0.90377 1.25841 0.98508 1.02100 0.98340 1.70269 1.20460 1.27561 1.40402 0.85266 0.77503 0.79095 0.78120 1.19880 1.22377 1.20156 1.21549 0.96067 0.84824 0.91876 0.90364 1.23248 1.02324 0.93570 0.98745 1.22562 1.02266 0.98089 0.78403 1.48596 1.68178 1.06040 1.11730 1.20221 0.75625 0.86079 0.85116 1.90648 1.51368 1.85754 1.17939 1.22480 1.06432 0.86603 1.02289 0.81455 1.23119 0.99144 0.99146 0.92397 0.81666 1.20444 0.92843 1.01891 0.94885 1.20611 0.96180 0.97266 0.93670 1.20878 0.95712 1.01499 0.97308 1.21309 0.93628 0.99731 0.99728 1.21309 1.00946 1.01110 0.92517 1.20986 0.93897 0.99236 0.98662 1.20559 0.93906 1.01442 0.94383 1.22236 0.89379 1.00350 0.97948 0.81657 1.22378 0.98892 0.81684 0.99249 0.99015 0.96038 0.94866 0.94310 0.91287 0.88132 0.89360 0.87446 0.90583 0.88764 0.86153 0.84347 0.83918 0.84432 0.95151 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 7.82 127.77 1.00 10.17 16 2 N -0.60 -30.04 2.93 -696.15 -2.04 -32.08 16 3 C -0.27 -14.72 9.63 84.03 0.81 -13.91 16 4 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 5 C -0.05 -2.98 5.08 84.86 0.43 -2.55 16 6 N -0.94 -56.99 10.67 21.65 0.23 -56.76 16 7 Si 0.97 45.17 29.58 68.60 2.03 47.20 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 C 0.17 6.55 3.43 46.18 0.16 6.70 16 12 H 0.08 3.05 7.92 -2.39 -0.02 3.03 16 13 C -0.14 -3.98 6.61 32.06 0.21 -3.76 16 14 C 0.11 2.43 6.70 86.93 0.58 3.01 16 15 N -0.61 -19.67 3.32 -811.35 -2.70 -22.36 16 16 C 0.54 17.34 6.89 87.66 0.60 17.94 16 17 O -0.58 -23.64 12.76 -3.02 -0.04 -23.68 16 18 C -0.16 -3.18 5.52 -11.54 -0.06 -3.24 16 19 H 0.17 2.11 7.08 -2.38 -0.02 2.10 16 20 C -0.12 -2.17 7.00 -10.49 -0.07 -2.25 16 21 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 22 C -0.06 -1.56 5.77 30.08 0.17 -1.39 16 23 C -0.08 -2.14 4.78 -19.75 -0.09 -2.24 16 24 C -0.14 -3.76 10.04 22.35 0.22 -3.54 16 25 C -0.13 -3.13 10.05 22.22 0.22 -2.90 16 26 C -0.14 -3.28 10.04 22.22 0.22 -3.06 16 27 C -0.11 -2.59 10.04 22.35 0.22 -2.36 16 28 C -0.10 -2.57 5.25 -18.87 -0.10 -2.67 16 29 C -0.08 -1.45 7.09 -10.45 -0.07 -1.52 16 30 H 0.17 1.72 8.14 -2.39 -0.02 1.70 16 31 C 0.10 4.32 6.51 86.73 0.56 4.88 16 32 H -0.01 -0.49 7.33 -2.39 -0.02 -0.51 16 33 H 0.02 1.15 7.23 -2.38 -0.02 1.13 16 34 H 0.03 1.43 6.04 -2.39 -0.01 1.42 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.07 2.12 6.07 -2.39 -0.01 2.10 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.63 7.01 -2.39 -0.02 1.62 16 40 H 0.08 2.38 6.27 -2.39 -0.01 2.36 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 45 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 46 H 0.03 1.49 7.11 -2.39 -0.02 1.47 16 47 H 0.03 1.36 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -76.27 368.11 3.47 -72.79 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.97 Total: 17.58 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.03 Total: -2.68 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.51 Total: -111.21 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.04 Total: -23.68 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.27 3.47 -72.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972495042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.273 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds