Wall clock time and date at job start Tue Mar 31 2020 14:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 119.99850 * 2 1 4 4 H 1.08004 * 119.99797 * 201.70952 * 3 2 1 5 5 C 1.38809 * 119.99686 * 21.71615 * 3 2 1 6 6 N 1.31613 * 120.00301 * 13.67852 * 5 3 2 7 7 Si 1.86801 * 119.99607 * 193.67838 * 5 3 2 8 8 H 1.48500 * 109.47061 * 59.99859 * 7 5 3 9 9 H 1.48501 * 109.47377 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47185 * 299.99910 * 7 5 3 11 11 C 1.46497 * 120.00185 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.78390 * 176.76354 * 11 2 1 13 13 C 1.55158 * 110.72177 * 53.52148 * 11 2 1 14 14 C 1.55132 * 101.48568 * 205.97174 * 13 11 2 15 15 N 1.47424 * 104.72102 * 37.29467 * 14 13 11 16 16 C 1.34777 * 125.64404 * 155.82010 * 15 14 13 17 17 O 1.21285 * 119.99489 * 179.68848 * 16 15 14 18 18 C 1.50698 * 120.00506 * 359.68764 * 16 15 14 19 19 H 1.08997 * 115.53931 * 325.59928 * 18 16 15 20 20 C 1.52957 * 117.48079 * 111.18288 * 18 16 15 21 21 H 1.08999 * 118.97656 * 356.70435 * 20 18 16 22 22 C 1.50950 * 118.98238 * 201.36224 * 20 18 16 23 23 C 1.38794 * 129.72628 * 115.02656 * 22 20 18 24 24 C 1.38016 * 120.31142 * 179.78582 * 23 22 20 25 25 C 1.38257 * 119.88617 * 0.43204 * 24 23 22 26 26 C 1.38008 * 119.87800 * 359.52421 * 25 24 23 27 27 C 1.37808 * 110.47866 * 295.00017 * 22 20 18 28 28 C 1.50968 * 110.46282 * 0.05615 * 27 22 20 29 29 C 1.53037 * 117.48412 * 180.02562 * 18 16 15 30 30 H 1.08997 * 119.99647 * 3.86421 * 29 18 16 31 31 C 1.47022 * 108.70734 * 335.55115 * 15 14 13 32 32 H 1.08996 * 109.47515 * 274.46633 * 1 2 3 33 33 H 1.08997 * 109.47181 * 34.47128 * 1 2 3 34 34 H 1.09001 * 109.46797 * 154.46941 * 1 2 3 35 35 H 0.97004 * 120.00215 * 180.02562 * 6 5 3 36 36 H 1.09002 * 110.99997 * 324.20887 * 13 11 2 37 37 H 1.08996 * 111.00361 * 88.06564 * 13 11 2 38 38 H 1.09004 * 110.49537 * 278.45668 * 14 13 11 39 39 H 1.08998 * 110.34401 * 156.05606 * 14 13 11 40 40 H 1.08000 * 119.84649 * 359.97438 * 23 22 20 41 41 H 1.07997 * 120.05505 * 180.23771 * 24 23 22 42 42 H 1.07996 * 120.06083 * 179.80371 * 25 24 23 43 43 H 1.08001 * 119.84902 * 180.24512 * 26 25 24 44 44 H 1.09000 * 109.92412 * 119.66430 * 28 27 22 45 45 H 1.09002 * 109.92003 * 240.77422 * 28 27 22 46 46 H 1.08994 * 109.88288 * 120.70056 * 31 15 14 47 47 H 1.08999 * 109.88421 * 241.87297 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1722 1.2191 -0.3460 5 6 1.5294 2.3454 0.4448 6 7 0.3967 2.2718 1.1110 7 14 2.3025 4.0101 0.0979 8 1 2.4188 4.2057 -1.3696 9 1 1.4502 5.0814 0.6735 10 1 3.6527 4.0668 0.7133 11 6 2.1975 -1.2687 -0.0006 12 1 3.2721 -1.0949 -0.0580 13 6 1.7248 -2.1750 -1.1679 14 6 2.0553 -3.5867 -0.6162 15 7 1.7501 -3.5071 0.8239 16 6 1.4407 -4.5496 1.6201 17 8 1.2123 -4.3668 2.7971 18 6 1.3784 -5.9423 1.0479 19 1 1.0159 -6.0132 0.0224 20 6 2.4577 -6.9340 1.4851 21 1 3.2556 -6.5899 2.1431 22 6 2.7418 -8.1357 0.6169 23 6 3.8900 -8.4692 -0.0880 24 6 3.9403 -9.6341 -0.8264 25 6 2.8393 -10.4690 -0.8719 26 6 1.6972 -10.1395 -0.1708 27 6 1.6462 -8.9706 0.5756 28 6 0.5219 -8.4077 1.4112 29 6 1.0210 -7.0831 2.0033 30 1 0.7616 -6.8652 3.0393 31 6 1.8455 -2.1029 1.2492 32 1 -0.3634 0.0800 1.0245 33 1 -0.3633 0.8472 -0.5816 34 1 -0.3633 -0.9273 -0.4429 35 1 -0.0370 3.0820 1.4215 36 1 0.6550 -2.0607 -1.3426 37 1 2.2917 -1.9698 -2.0760 38 1 3.1094 -3.8188 -0.7682 39 1 1.4276 -4.3376 -1.0960 40 1 4.7491 -7.8155 -0.0562 41 1 4.8372 -9.8914 -1.3703 42 1 2.8745 -11.3797 -1.4514 43 1 0.8387 -10.7940 -0.2034 44 1 -0.3522 -8.2282 0.7853 45 1 0.2693 -9.1038 2.2111 46 1 0.8901 -1.7736 1.6576 47 1 2.6288 -1.9952 1.9995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972495043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:57 Heat of formation + Delta-G solvation = 54.773236 kcal Electronic energy + Delta-G solvation = -27124.238908 eV Core-core repulsion = 23466.498334 eV Total energy + Delta-G solvation = -3657.740574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.20607 -39.52536 -37.77551 -36.66697 -34.79021 -32.10931 -31.62422 -30.79050 -29.70728 -28.28888 -27.80261 -26.06603 -24.97398 -23.26505 -22.40198 -22.18929 -20.97173 -20.60634 -19.23732 -18.88338 -17.28000 -17.04501 -16.48153 -16.01329 -15.50195 -15.42622 -15.19981 -14.74663 -14.26515 -13.85459 -13.73689 -13.48211 -13.33085 -13.28555 -12.97092 -12.77571 -12.57497 -12.37290 -12.18753 -11.96184 -11.84120 -11.57758 -11.49432 -11.11595 -10.92660 -10.83679 -10.78998 -10.57816 -10.45231 -10.33147 -10.22788 -9.89327 -9.83059 -9.65796 -9.03749 -8.75732 -8.58237 -8.29798 -6.84371 -5.77139 -3.23876 1.00574 1.09443 2.57228 3.07016 3.37012 3.37933 3.42678 3.43401 3.69023 4.12130 4.30758 4.45530 4.58167 4.62478 4.74837 4.76983 4.80857 4.92145 5.00011 5.08241 5.21299 5.27281 5.31932 5.33761 5.47488 5.49482 5.54042 5.60034 5.69105 5.74018 5.80287 5.82408 5.88742 5.99444 6.02645 6.15810 6.22936 6.32681 6.36529 6.39037 6.52526 6.66558 6.70263 6.82113 6.86004 7.33374 7.69638 7.76869 7.80546 8.32547 8.38943 9.17302 9.79924 10.28382 11.27445 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.002389 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.164895 B =11717.518316 C =12192.275232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.103 3.897 15 N -0.606 5.606 16 C 0.554 3.446 17 O -0.543 6.543 18 C -0.139 4.139 19 H 0.121 0.879 20 C -0.101 4.101 21 H 0.122 0.878 22 C -0.065 4.065 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.109 4.109 27 C -0.092 4.092 28 C -0.056 4.056 29 C -0.124 4.124 30 H 0.135 0.865 31 C 0.087 3.913 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.002 0.998 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -24.992 -5.142 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.021 4.021 15 N -0.339 5.339 16 C 0.342 3.658 17 O -0.421 6.421 18 C -0.160 4.160 19 H 0.139 0.861 20 C -0.120 4.120 21 H 0.140 0.860 22 C -0.065 4.065 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.092 4.092 28 C -0.093 4.093 29 C -0.143 4.143 30 H 0.153 0.847 31 C -0.038 4.038 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.169 -24.747 -4.382 25.331 hybrid contribution 0.423 0.960 -0.183 1.065 sum 3.591 -23.787 -4.565 24.486 Atomic orbital electron populations 1.20813 0.82381 0.95750 0.99521 1.43928 1.01928 0.99897 1.84832 1.19186 0.97864 0.84986 1.37141 0.91171 1.25039 0.97814 0.98619 0.98004 1.70073 1.18795 1.27326 1.38626 0.86294 0.78436 0.83554 0.77980 1.21016 1.21623 1.20868 1.21352 0.96378 0.85939 0.90071 0.90351 1.23398 1.02843 0.93228 0.99937 1.22376 1.00126 0.98970 0.80602 1.48458 1.67521 1.07810 1.10135 1.19024 0.77034 0.84288 0.85475 1.90701 1.50222 1.85155 1.16015 1.22167 1.04057 0.89108 1.00705 0.86100 1.21398 0.93654 0.95918 1.01009 0.86027 1.19678 0.94327 0.94937 0.97536 1.20743 0.97353 0.97026 0.96491 1.21040 0.98736 0.94628 0.99630 1.21037 0.93300 0.99788 0.99479 1.20636 0.98526 0.96102 0.97436 1.20527 0.95558 0.94891 0.98184 1.20337 0.96420 0.94129 0.98365 1.22933 0.97417 0.93705 1.00205 0.84731 1.22973 1.02356 0.78392 1.00053 0.95145 0.93592 0.97935 0.93539 0.90314 0.90376 0.91516 0.91397 0.85983 0.85773 0.85838 0.86108 0.89604 0.89224 0.90829 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.82 59.84 0.47 4.34 16 2 N -0.59 -14.22 2.93 -171.39 -0.50 -14.72 16 3 C -0.26 -7.01 9.63 -15.06 -0.14 -7.16 16 4 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -26.15 10.68 55.49 0.59 -25.56 16 7 Si 0.91 21.54 29.58 -169.99 -5.03 16.51 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.39 3.44 -66.09 -0.23 3.16 16 12 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 13 C -0.15 -2.40 6.60 -24.46 -0.16 -2.57 16 14 C 0.10 1.36 6.70 -2.41 -0.02 1.35 16 15 N -0.61 -10.01 3.32 -170.38 -0.57 -10.57 16 16 C 0.55 9.20 7.63 -10.99 -0.08 9.12 16 17 O -0.54 -11.02 16.68 5.55 0.09 -10.93 16 18 C -0.14 -1.74 5.11 -91.78 -0.47 -2.21 16 19 H 0.12 1.36 7.07 -51.93 -0.37 1.00 16 20 C -0.10 -1.15 6.58 -91.44 -0.60 -1.75 16 21 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 22 C -0.06 -0.67 5.94 -104.45 -0.62 -1.29 16 23 C -0.10 -0.91 10.04 -39.46 -0.40 -1.31 16 24 C -0.12 -0.98 10.05 -39.66 -0.40 -1.38 16 25 C -0.12 -0.90 10.05 -39.66 -0.40 -1.30 16 26 C -0.11 -0.90 10.04 -39.46 -0.40 -1.30 16 27 C -0.09 -0.88 6.11 -104.45 -0.64 -1.52 16 28 C -0.06 -0.49 6.57 -27.53 -0.18 -0.67 16 29 C -0.12 -1.39 6.54 -90.14 -0.59 -1.98 16 30 H 0.13 1.61 7.83 -51.93 -0.41 1.21 16 31 C 0.09 1.70 6.51 -3.06 -0.02 1.68 16 32 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 33 H 0.05 1.19 7.23 -51.93 -0.38 0.82 16 34 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.08 1.31 6.05 -51.93 -0.31 1.00 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.77 7.00 -51.93 -0.36 0.40 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.66 7.11 -51.93 -0.37 1.30 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -31.62 375.73 -11.79 -43.40 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.07 Total: 0.97 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -4.96 Total: -4.76 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.48 Total: -50.85 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.62 -11.79 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972495043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.178 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds