Wall clock time and date at job start Tue Mar 31 2020 14:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 119.99850 * 2 1 4 4 H 1.08004 * 119.99797 * 201.70952 * 3 2 1 5 5 C 1.38809 * 119.99686 * 21.71615 * 3 2 1 6 6 N 1.31613 * 120.00301 * 13.67852 * 5 3 2 7 7 Si 1.86801 * 119.99607 * 193.67838 * 5 3 2 8 8 H 1.48500 * 109.47061 * 59.99859 * 7 5 3 9 9 H 1.48501 * 109.47377 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47185 * 299.99910 * 7 5 3 11 11 C 1.46497 * 120.00185 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.78390 * 176.76354 * 11 2 1 13 13 C 1.55158 * 110.72177 * 53.52148 * 11 2 1 14 14 C 1.55132 * 101.48568 * 205.97174 * 13 11 2 15 15 N 1.47424 * 104.72102 * 37.29467 * 14 13 11 16 16 C 1.34777 * 125.64404 * 155.82010 * 15 14 13 17 17 O 1.21285 * 119.99489 * 179.68848 * 16 15 14 18 18 C 1.50698 * 120.00506 * 359.68764 * 16 15 14 19 19 H 1.08997 * 115.53931 * 325.59928 * 18 16 15 20 20 C 1.52957 * 117.48079 * 111.18288 * 18 16 15 21 21 H 1.08999 * 118.97656 * 356.70435 * 20 18 16 22 22 C 1.50950 * 118.98238 * 201.36224 * 20 18 16 23 23 C 1.38794 * 129.72628 * 115.02656 * 22 20 18 24 24 C 1.38016 * 120.31142 * 179.78582 * 23 22 20 25 25 C 1.38257 * 119.88617 * 0.43204 * 24 23 22 26 26 C 1.38008 * 119.87800 * 359.52421 * 25 24 23 27 27 C 1.37808 * 110.47866 * 295.00017 * 22 20 18 28 28 C 1.50968 * 110.46282 * 0.05615 * 27 22 20 29 29 C 1.53037 * 117.48412 * 180.02562 * 18 16 15 30 30 H 1.08997 * 119.99647 * 3.86421 * 29 18 16 31 31 C 1.47022 * 108.70734 * 335.55115 * 15 14 13 32 32 H 1.08996 * 109.47515 * 274.46633 * 1 2 3 33 33 H 1.08997 * 109.47181 * 34.47128 * 1 2 3 34 34 H 1.09001 * 109.46797 * 154.46941 * 1 2 3 35 35 H 0.97004 * 120.00215 * 180.02562 * 6 5 3 36 36 H 1.09002 * 110.99997 * 324.20887 * 13 11 2 37 37 H 1.08996 * 111.00361 * 88.06564 * 13 11 2 38 38 H 1.09004 * 110.49537 * 278.45668 * 14 13 11 39 39 H 1.08998 * 110.34401 * 156.05606 * 14 13 11 40 40 H 1.08000 * 119.84649 * 359.97438 * 23 22 20 41 41 H 1.07997 * 120.05505 * 180.23771 * 24 23 22 42 42 H 1.07996 * 120.06083 * 179.80371 * 25 24 23 43 43 H 1.08001 * 119.84902 * 180.24512 * 26 25 24 44 44 H 1.09000 * 109.92412 * 119.66430 * 28 27 22 45 45 H 1.09002 * 109.92003 * 240.77422 * 28 27 22 46 46 H 1.08994 * 109.88288 * 120.70056 * 31 15 14 47 47 H 1.08999 * 109.88421 * 241.87297 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1722 1.2191 -0.3460 5 6 1.5294 2.3454 0.4448 6 7 0.3967 2.2718 1.1110 7 14 2.3025 4.0101 0.0979 8 1 2.4188 4.2057 -1.3696 9 1 1.4502 5.0814 0.6735 10 1 3.6527 4.0668 0.7133 11 6 2.1975 -1.2687 -0.0006 12 1 3.2721 -1.0949 -0.0580 13 6 1.7248 -2.1750 -1.1679 14 6 2.0553 -3.5867 -0.6162 15 7 1.7501 -3.5071 0.8239 16 6 1.4407 -4.5496 1.6201 17 8 1.2123 -4.3668 2.7971 18 6 1.3784 -5.9423 1.0479 19 1 1.0159 -6.0132 0.0224 20 6 2.4577 -6.9340 1.4851 21 1 3.2556 -6.5899 2.1431 22 6 2.7418 -8.1357 0.6169 23 6 3.8900 -8.4692 -0.0880 24 6 3.9403 -9.6341 -0.8264 25 6 2.8393 -10.4690 -0.8719 26 6 1.6972 -10.1395 -0.1708 27 6 1.6462 -8.9706 0.5756 28 6 0.5219 -8.4077 1.4112 29 6 1.0210 -7.0831 2.0033 30 1 0.7616 -6.8652 3.0393 31 6 1.8455 -2.1029 1.2492 32 1 -0.3634 0.0800 1.0245 33 1 -0.3633 0.8472 -0.5816 34 1 -0.3633 -0.9273 -0.4429 35 1 -0.0370 3.0820 1.4215 36 1 0.6550 -2.0607 -1.3426 37 1 2.2917 -1.9698 -2.0760 38 1 3.1094 -3.8188 -0.7682 39 1 1.4276 -4.3376 -1.0960 40 1 4.7491 -7.8155 -0.0562 41 1 4.8372 -9.8914 -1.3703 42 1 2.8745 -11.3797 -1.4514 43 1 0.8387 -10.7940 -0.2034 44 1 -0.3522 -8.2282 0.7853 45 1 0.2693 -9.1038 2.2111 46 1 0.8901 -1.7736 1.6576 47 1 2.6288 -1.9952 1.9995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972495043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:56 Heat of formation + Delta-G solvation = 38.626362 kcal Electronic energy + Delta-G solvation = -27124.939089 eV Core-core repulsion = 23466.498334 eV Total energy + Delta-G solvation = -3658.440755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08701 -40.74604 -39.06895 -37.66795 -36.56414 -33.53656 -32.72074 -31.60021 -31.17384 -29.64297 -28.64537 -28.08587 -26.22707 -24.59738 -23.83149 -23.00083 -21.75684 -21.40209 -20.86002 -20.07043 -18.97022 -18.45835 -17.49450 -17.27548 -16.82328 -16.49884 -16.13475 -15.94028 -15.62541 -15.08348 -15.05523 -14.67396 -14.53914 -14.37187 -14.21638 -13.95276 -13.69233 -13.57807 -13.38715 -13.31263 -13.14864 -12.76389 -12.71301 -12.54517 -12.41620 -12.25068 -12.21582 -12.12828 -11.82398 -11.74748 -11.65380 -11.46177 -11.11203 -10.98806 -10.63644 -9.73712 -9.65108 -9.41426 -8.85289 -7.84908 -5.34188 0.34574 0.48851 1.37077 1.47512 1.49663 1.56423 1.81489 2.50288 2.52642 2.93204 3.19330 3.28109 3.49183 3.54637 3.67492 3.73865 3.83538 3.88767 4.03927 4.09525 4.21286 4.23915 4.26054 4.33223 4.36126 4.43521 4.59007 4.65895 4.67208 4.76981 4.80980 4.86036 4.87340 4.89594 5.00698 5.05960 5.12410 5.17660 5.20471 5.27540 5.28880 5.40955 5.56548 5.62570 5.64552 5.68352 5.73521 6.11572 6.29036 6.49497 7.04041 7.11341 7.81970 8.26431 9.18325 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.002389 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.164895 B =11717.518316 C =12192.275232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.973 3.027 8 H -0.274 1.274 9 H -0.298 1.298 10 H -0.275 1.275 11 C 0.166 3.834 12 H 0.084 0.916 13 C -0.140 4.140 14 C 0.107 3.893 15 N -0.607 5.607 16 C 0.549 3.451 17 O -0.591 6.591 18 C -0.139 4.139 19 H 0.141 0.859 20 C -0.093 4.093 21 H 0.109 0.891 22 C -0.085 4.085 23 C -0.110 4.110 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.100 4.100 28 C -0.049 4.049 29 C -0.126 4.126 30 H 0.119 0.881 31 C 0.098 3.902 32 H -0.006 1.006 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.248 0.752 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.035 0.965 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -27.912 -7.820 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.322 5.322 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.801 3.199 8 H -0.200 1.200 9 H -0.225 1.225 10 H -0.201 1.201 11 C 0.057 3.943 12 H 0.102 0.898 13 C -0.179 4.179 14 C -0.014 4.014 15 N -0.339 5.339 16 C 0.339 3.661 17 O -0.472 6.472 18 C -0.159 4.159 19 H 0.159 0.841 20 C -0.112 4.112 21 H 0.127 0.873 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.100 4.100 28 C -0.086 4.086 29 C -0.144 4.144 30 H 0.137 0.863 31 C -0.028 4.028 32 H 0.012 0.988 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.053 0.947 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.422 -27.715 -7.106 28.951 hybrid contribution 0.105 1.750 0.675 1.879 sum 4.527 -25.965 -6.431 27.130 Atomic orbital electron populations 1.20471 0.82894 0.96106 0.97100 1.44123 1.01963 1.01075 1.85077 1.19607 0.98230 0.86028 1.35829 0.90249 1.25862 0.98567 1.02161 0.98440 1.70265 1.20452 1.27580 1.40377 0.85251 0.77504 0.79072 0.78054 1.19982 1.22480 1.20093 1.21563 0.96357 0.84722 0.91608 0.89791 1.23272 1.02428 0.93239 0.99009 1.22593 1.02393 0.98270 0.78162 1.48515 1.67353 1.06315 1.11738 1.19784 0.75671 0.85728 0.84914 1.90673 1.52193 1.86059 1.18259 1.22006 1.05863 0.86541 1.01529 0.84093 1.21344 0.93238 0.95708 1.00897 0.87256 1.19661 0.95453 0.94750 0.98620 1.20940 0.97252 0.97865 0.96707 1.21350 0.99788 0.94031 0.99207 1.21415 0.92750 1.00406 0.98912 1.20929 0.99577 0.95800 0.96905 1.20657 0.95306 0.95437 0.98615 1.20328 0.96623 0.92715 0.98904 1.22994 0.97799 0.94245 0.99411 0.86267 1.22540 0.99641 0.80877 0.99722 0.98784 0.96002 0.94905 0.94293 0.91267 0.87945 0.88973 0.88216 0.85452 0.83679 0.83320 0.84079 0.88376 0.87795 0.94651 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.82 127.77 1.00 9.98 16 2 N -0.60 -29.64 2.93 -696.15 -2.04 -31.69 16 3 C -0.27 -14.40 9.63 84.03 0.81 -13.59 16 4 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 5 C -0.06 -3.10 5.08 84.86 0.43 -2.66 16 6 N -0.94 -56.57 10.68 21.65 0.23 -56.34 16 7 Si 0.97 44.90 29.58 68.60 2.03 46.93 16 8 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 C 0.17 6.45 3.44 46.18 0.16 6.61 16 12 H 0.08 3.15 7.93 -2.38 -0.02 3.14 16 13 C -0.14 -4.03 6.60 32.06 0.21 -3.81 16 14 C 0.11 2.53 6.70 86.93 0.58 3.11 16 15 N -0.61 -19.76 3.32 -811.34 -2.70 -22.46 16 16 C 0.55 18.36 7.63 87.66 0.67 19.02 16 17 O -0.59 -25.10 16.68 -3.04 -0.05 -25.15 16 18 C -0.14 -3.30 5.11 -11.54 -0.06 -3.36 16 19 H 0.14 2.77 7.07 -2.39 -0.02 2.75 16 20 C -0.09 -2.04 6.58 -11.32 -0.07 -2.11 16 21 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 22 C -0.08 -1.60 5.94 -19.75 -0.12 -1.71 16 23 C -0.11 -1.78 10.04 22.35 0.22 -1.56 16 24 C -0.13 -1.60 10.05 22.22 0.22 -1.38 16 25 C -0.12 -1.35 10.05 22.22 0.22 -1.13 16 26 C -0.11 -1.49 10.04 22.35 0.22 -1.27 16 27 C -0.10 -1.66 6.11 -19.75 -0.12 -1.78 16 28 C -0.05 -0.76 6.57 30.08 0.20 -0.57 16 29 C -0.13 -2.73 6.54 -10.49 -0.07 -2.80 16 30 H 0.12 2.95 7.83 -2.39 -0.02 2.93 16 31 C 0.10 3.97 6.51 86.73 0.56 4.53 16 32 H -0.01 -0.35 7.33 -2.39 -0.02 -0.37 16 33 H 0.02 1.16 7.23 -2.39 -0.02 1.14 16 34 H 0.03 1.41 6.02 -2.39 -0.01 1.39 16 35 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 36 H 0.07 2.15 6.05 -2.39 -0.01 2.14 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.81 7.00 -2.39 -0.02 1.79 16 40 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.03 1.70 7.11 -2.39 -0.02 1.68 16 47 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -72.27 375.73 3.51 -68.76 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.97 Total: 14.40 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.08 Total: 5.54 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.51 Total: -110.48 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.15 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -72.27 3.51 -68.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972495043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.385 kcal (2) G-P(sol) polarization free energy of solvation -72.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds