Wall clock time and date at job start Tue Mar 31 2020 14:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 120.00070 * 2 1 4 4 H 1.07998 * 120.00205 * 134.88639 * 3 2 1 5 5 C 1.38815 * 119.99900 * 314.87890 * 3 2 1 6 6 N 1.31616 * 119.99984 * 182.18813 * 5 3 2 7 7 Si 1.86800 * 119.99963 * 2.19698 * 5 3 2 8 8 H 1.48499 * 109.47330 * 85.64153 * 7 5 3 9 9 H 1.48494 * 109.47046 * 205.63928 * 7 5 3 10 10 H 1.48495 * 109.47259 * 325.64243 * 7 5 3 11 11 C 1.46499 * 119.99703 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.64043 * 181.68251 * 11 2 1 13 13 C 1.55155 * 110.72101 * 305.01616 * 11 2 1 14 14 C 1.54906 * 101.58101 * 153.87050 * 13 11 2 15 15 N 1.47428 * 104.83456 * 322.98970 * 14 13 11 16 16 C 1.34772 * 125.65182 * 204.16867 * 15 14 13 17 17 O 1.21545 * 119.99840 * 6.06375 * 16 15 14 18 18 C 1.47863 * 120.00212 * 186.06983 * 16 15 14 19 19 C 1.39675 * 120.06840 * 352.29846 * 18 16 15 20 20 C 1.38098 * 120.25392 * 179.80163 * 19 18 16 21 21 C 1.37989 * 120.17406 * 0.48305 * 20 19 18 22 22 C 1.39761 * 120.09068 * 359.74734 * 21 20 19 23 23 C 1.39036 * 120.09688 * 0.02562 * 22 21 20 24 24 C 1.47843 * 119.07472 * 180.02562 * 22 21 20 25 25 C 1.32521 * 119.47509 * 19.01584 * 24 22 21 26 26 C 1.50319 * 121.05878 * 0.44766 * 25 24 22 27 27 C 1.50632 * 120.62613 * 179.69971 * 21 20 19 28 28 C 1.47026 * 108.69953 * 24.13039 * 15 14 13 29 29 H 1.09006 * 109.46630 * 264.72075 * 1 2 3 30 30 H 1.09001 * 109.47246 * 24.71228 * 1 2 3 31 31 H 1.09000 * 109.47751 * 144.72160 * 1 2 3 32 32 H 0.97001 * 119.99929 * 180.02562 * 6 5 3 33 33 H 1.09001 * 111.00365 * 271.94358 * 13 11 2 34 34 H 1.08996 * 111.00302 * 35.79082 * 13 11 2 35 35 H 1.09006 * 110.36476 * 204.15757 * 14 13 11 36 36 H 1.08998 * 110.46081 * 81.87760 * 14 13 11 37 37 H 1.07997 * 119.87550 * 0.03784 * 19 18 16 38 38 H 1.07998 * 119.91464 * 180.28421 * 20 19 18 39 39 H 1.08000 * 120.23800 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.26312 * 198.99441 * 24 22 21 41 41 H 1.08003 * 119.47136 * 180.44629 * 25 24 22 42 42 H 1.09004 * 109.22556 * 203.85463 * 26 25 24 43 43 H 1.08999 * 109.22579 * 84.50113 * 26 25 24 44 44 H 1.08995 * 109.40962 * 265.58764 * 27 21 20 45 45 H 1.09010 * 109.40566 * 25.43874 * 27 21 20 46 46 H 1.08998 * 109.88227 * 239.52567 * 28 15 14 47 47 H 1.08994 * 109.88181 * 118.35901 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 2.9913 1.3235 0.6626 5 6 1.7621 2.2111 -0.8519 6 7 2.4463 3.3350 -0.8829 7 14 0.2694 1.9956 -1.9540 8 1 -0.9575 2.3656 -1.2037 9 1 0.4035 2.8711 -3.1458 10 1 0.1753 0.5788 -2.3886 11 6 2.1974 -1.2688 -0.0006 12 1 3.2726 -1.0918 0.0295 13 6 1.7507 -2.1610 1.1875 14 6 2.0638 -3.5785 0.6468 15 7 1.7323 -3.5168 -0.7884 16 6 1.4041 -4.5684 -1.5647 17 8 1.2557 -5.6677 -1.0678 18 6 1.2247 -4.3849 -3.0209 19 6 1.2356 -3.1011 -3.5711 20 6 1.0725 -2.9256 -4.9311 21 6 0.8876 -4.0177 -5.7541 22 6 0.8701 -5.3068 -5.2145 23 6 1.0383 -5.4925 -3.8469 24 6 0.6710 -6.4607 -6.1170 25 6 0.8890 -6.3176 -7.4163 26 6 1.3450 -5.0034 -7.9860 27 6 0.7020 -3.8375 -7.2381 28 6 1.8181 -2.1177 -1.2322 29 1 -0.3633 -0.0946 1.0234 30 1 -0.3634 0.9336 -0.4296 31 1 -0.3634 -0.8389 -0.5935 32 1 2.1752 4.0516 -1.4779 33 1 2.3374 -1.9451 2.0805 34 1 0.6851 -2.0445 1.3846 35 1 1.4430 -4.3213 1.1479 36 1 3.1195 -3.8135 0.7826 37 1 1.3759 -2.2427 -2.9310 38 1 1.0864 -1.9308 -5.3513 39 1 1.0256 -6.4877 -3.4276 40 1 0.3509 -7.4129 -5.7206 41 1 0.7366 -7.1587 -8.0765 42 1 1.0661 -4.9523 -9.0385 43 1 2.4292 -4.9313 -7.8989 44 1 -0.3628 -3.8029 -7.4683 45 1 1.1709 -2.9045 -7.5511 46 1 0.8539 -1.7931 -1.6234 47 1 2.5846 -2.0191 -2.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972522891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:39 Heat of formation + Delta-G solvation = 42.982798 kcal Electronic energy + Delta-G solvation = -27864.808876 eV Core-core repulsion = 24206.557030 eV Total energy + Delta-G solvation = -3658.251846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79570 -40.46188 -39.06153 -36.94468 -36.63002 -33.82444 -33.46155 -32.58303 -30.89322 -30.21372 -29.57813 -28.12725 -26.20948 -25.16712 -23.86498 -23.62035 -22.77918 -21.16313 -21.06097 -19.52032 -19.03160 -17.89832 -17.81253 -17.34138 -16.92167 -16.77839 -16.28419 -15.78021 -15.62851 -15.43087 -15.15406 -14.90089 -14.77340 -14.59219 -14.42499 -14.13579 -14.03463 -13.67748 -13.61398 -13.48916 -13.33035 -13.17688 -12.94891 -12.59892 -12.57032 -12.40345 -12.12036 -11.96550 -11.78102 -11.60262 -11.43687 -11.31377 -11.02381 -10.98836 -10.70910 -9.99681 -9.67420 -9.08929 -8.72367 -8.14335 -5.76659 -0.32184 0.04813 1.31609 1.33788 1.40431 1.53168 1.83162 1.86179 2.40028 2.82752 3.05854 3.16551 3.44032 3.59672 3.69653 3.72297 3.83290 3.87226 4.07327 4.13249 4.18693 4.22991 4.25371 4.34546 4.39522 4.42166 4.45420 4.50042 4.63001 4.70188 4.74748 4.80024 4.89149 4.90394 4.93742 4.97076 5.03626 5.07598 5.12882 5.16818 5.23807 5.26692 5.33955 5.40451 5.68499 5.82117 5.92064 5.97653 6.21198 6.33821 6.92326 6.97304 7.54549 8.00149 8.99894 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.003953 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.842878 B = 7080.806978 C = 8860.130594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.609 5.609 3 C -0.265 4.265 4 H 0.046 0.954 5 C -0.019 4.019 6 N -0.954 5.954 7 Si 0.968 3.032 8 H -0.281 1.281 9 H -0.315 1.315 10 H -0.248 1.248 11 C 0.167 3.833 12 H 0.086 0.914 13 C -0.137 4.137 14 C 0.110 3.890 15 N -0.606 5.606 16 C 0.570 3.430 17 O -0.579 6.579 18 C -0.152 4.152 19 C -0.128 4.128 20 C -0.130 4.130 21 C -0.056 4.056 22 C -0.074 4.074 23 C -0.060 4.060 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.096 4.096 27 C -0.084 4.084 28 C 0.076 3.924 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 -17.584 -13.005 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.332 5.332 3 C -0.395 4.395 4 H 0.064 0.936 5 C -0.216 4.216 6 N -0.597 5.597 7 Si 0.799 3.201 8 H -0.209 1.209 9 H -0.244 1.244 10 H -0.172 1.172 11 C 0.059 3.941 12 H 0.104 0.896 13 C -0.177 4.177 14 C -0.012 4.012 15 N -0.338 5.338 16 C 0.361 3.639 17 O -0.461 6.461 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.057 4.057 22 C -0.074 4.074 23 C -0.079 4.079 24 C -0.164 4.164 25 C -0.144 4.144 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.048 4.048 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.130 -18.035 -12.830 22.515 hybrid contribution -0.526 0.542 0.094 0.761 sum -4.656 -17.493 -12.736 22.133 Atomic orbital electron populations 1.21490 0.84512 0.98678 0.99504 1.43949 1.00825 1.01415 1.87009 1.18640 1.13155 0.91172 1.16519 0.93628 1.26309 1.01055 0.96351 0.97852 1.69900 1.41829 1.06789 1.41207 0.85579 0.79029 0.78316 0.77173 1.20872 1.24414 1.17180 1.21647 0.96697 0.84059 0.91663 0.89613 1.23192 1.02620 0.92659 0.99216 1.22327 1.01325 0.98165 0.79386 1.48383 1.66986 1.07063 1.11405 1.18255 0.76101 0.82828 0.86698 1.90698 1.53991 1.25668 1.75774 1.19771 1.08399 0.95159 0.92170 1.22962 0.96533 0.97712 0.97309 1.21212 1.01012 0.99779 0.92774 1.20604 0.95587 0.91987 0.97473 1.19072 1.01416 0.94330 0.92543 1.21293 0.95847 0.98187 0.92554 1.21696 1.04083 0.96715 0.93930 1.23502 0.96458 0.99255 0.95176 1.20540 1.00790 0.91189 1.00776 1.20606 1.02758 1.00284 0.88429 1.23186 1.01636 0.80210 0.99773 0.94876 0.95418 0.92817 0.92697 0.88618 0.90848 0.90416 0.89954 0.82363 0.83627 0.85095 0.85116 0.84024 0.87766 0.90545 0.89241 0.88538 0.90600 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.92 7.68 127.77 0.98 4.90 16 2 N -0.61 -25.86 2.56 -696.14 -1.78 -27.64 16 3 C -0.27 -13.99 9.97 84.03 0.84 -13.16 16 4 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 5 C -0.02 -1.04 5.50 84.86 0.47 -0.57 16 6 N -0.95 -57.15 13.97 21.65 0.30 -56.85 16 7 Si 0.97 43.75 24.56 68.60 1.68 45.44 16 8 H -0.28 -12.33 6.79 99.48 0.68 -11.66 16 9 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 10 H -0.25 -10.04 6.62 99.48 0.66 -9.38 16 11 C 0.17 5.80 3.45 46.18 0.16 5.96 16 12 H 0.09 3.09 7.95 -2.38 -0.02 3.07 16 13 C -0.14 -3.92 6.63 31.98 0.21 -3.71 16 14 C 0.11 3.03 6.94 86.85 0.60 3.63 16 15 N -0.61 -18.95 3.33 -829.30 -2.76 -21.71 16 16 C 0.57 19.42 7.81 86.79 0.68 20.09 16 17 O -0.58 -22.49 16.60 -3.86 -0.06 -22.55 16 18 C -0.15 -4.68 5.87 -20.10 -0.12 -4.80 16 19 C -0.13 -3.64 8.61 22.58 0.19 -3.44 16 20 C -0.13 -3.17 9.69 22.18 0.21 -2.95 16 21 C -0.06 -1.24 5.68 -19.58 -0.11 -1.35 16 22 C -0.07 -1.75 5.77 -20.18 -0.12 -1.87 16 23 C -0.06 -1.68 9.36 22.75 0.21 -1.47 16 24 C -0.15 -2.67 9.90 23.67 0.23 -2.43 16 25 C -0.13 -1.69 10.02 24.42 0.24 -1.45 16 26 C -0.10 -1.15 6.05 29.64 0.18 -0.97 16 27 C -0.08 -1.24 5.95 29.73 0.18 -1.07 16 28 C 0.08 2.41 4.45 86.73 0.39 2.80 16 29 H 0.03 1.19 7.88 -2.38 -0.02 1.17 16 30 H 0.03 1.17 2.59 -2.39 -0.01 1.16 16 31 H 0.05 1.83 6.38 -2.39 -0.02 1.82 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.15 6.97 -2.39 -0.02 2.13 16 35 H 0.08 2.14 7.98 -2.38 -0.02 2.12 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.16 4.68 2.73 -8.34 -0.02 4.66 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.13 3.65 7.67 -2.91 -0.02 3.63 16 40 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 41 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.10 1.18 8.07 -2.38 -0.02 1.16 16 46 H 0.08 2.51 4.82 -2.39 -0.01 2.50 16 47 H 0.08 2.53 6.74 -2.39 -0.02 2.51 16 Total: -1.00 -67.37 361.86 3.71 -63.66 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.89 Total: 21.51 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.43 Total: -1.86 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -4.24 Total: -106.20 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.68 Total: 45.44 kcal Total: -67.37 3.71 -63.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972522891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.645 kcal (2) G-P(sol) polarization free energy of solvation -67.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds