Wall clock time and date at job start Tue Mar 31 2020 14:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 120.00067 * 2 1 4 4 H 1.07998 * 120.00280 * 204.95232 * 3 2 1 5 5 C 1.38813 * 119.99941 * 24.94789 * 3 2 1 6 6 N 1.31622 * 119.99860 * 5.28313 * 5 3 2 7 7 Si 1.86796 * 120.00280 * 185.28073 * 5 3 2 8 8 H 1.48509 * 109.46964 * 60.00154 * 7 5 3 9 9 H 1.48501 * 109.47319 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47219 * 300.00193 * 7 5 3 11 11 C 1.46497 * 120.00225 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.78089 * 178.21639 * 11 2 1 13 13 C 1.55160 * 110.72111 * 54.97824 * 11 2 1 14 14 C 1.55124 * 101.48771 * 205.96896 * 13 11 2 15 15 N 1.47421 * 104.72252 * 37.29489 * 14 13 11 16 16 C 1.34781 * 125.65013 * 155.82153 * 15 14 13 17 17 O 1.21552 * 120.00151 * 185.51107 * 16 15 14 18 18 C 1.47860 * 119.99679 * 5.50104 * 16 15 14 19 19 C 1.39678 * 120.07413 * 204.51814 * 18 16 15 20 20 C 1.38092 * 120.25585 * 179.97438 * 19 18 16 21 21 C 1.37982 * 120.17782 * 0.02562 * 20 19 18 22 22 C 1.39758 * 120.09048 * 359.97438 * 21 20 19 23 23 C 1.39039 * 120.09850 * 359.97438 * 22 21 20 24 24 C 1.47845 * 119.07583 * 180.02562 * 22 21 20 25 25 C 1.32521 * 119.47217 * 19.03978 * 24 22 21 26 26 C 1.50324 * 121.05480 * 0.45802 * 25 24 22 27 27 C 1.50632 * 120.62877 * 179.71450 * 21 20 19 28 28 C 1.47022 * 108.70366 * 335.55230 * 15 14 13 29 29 H 1.08994 * 109.46845 * 275.04583 * 1 2 3 30 30 H 1.08998 * 109.47185 * 35.04954 * 1 2 3 31 31 H 1.09002 * 109.46971 * 155.05060 * 1 2 3 32 32 H 0.97000 * 120.00231 * 179.97438 * 6 5 3 33 33 H 1.09006 * 111.00062 * 324.21366 * 13 11 2 34 34 H 1.09007 * 111.00356 * 88.01734 * 13 11 2 35 35 H 1.08998 * 110.49516 * 278.44772 * 14 13 11 36 36 H 1.09000 * 110.34344 * 156.06137 * 14 13 11 37 37 H 1.07999 * 119.87136 * 359.95449 * 19 18 16 38 38 H 1.08004 * 119.91441 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.23477 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.26534 * 199.07755 * 24 22 21 41 41 H 1.08005 * 119.47067 * 180.47236 * 25 24 22 42 42 H 1.08998 * 109.22877 * 84.46607 * 26 25 24 43 43 H 1.08994 * 109.22924 * 203.82722 * 26 25 24 44 44 H 1.08997 * 109.41362 * 265.57852 * 27 21 20 45 45 H 1.09002 * 109.41340 * 25.36213 * 27 21 20 46 46 H 1.08999 * 109.88531 * 120.70877 * 28 15 14 47 47 H 1.09004 * 109.88464 * 241.71598 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1541 1.2296 -0.3946 5 6 1.5528 2.3320 0.5071 6 7 0.3710 2.2592 1.0820 7 14 2.4267 3.9775 0.3736 8 1 2.6617 4.2985 -1.0572 9 1 1.5846 5.0364 0.9860 10 1 3.7281 3.9061 1.0852 11 6 2.1975 -1.2687 0.0006 12 1 3.2731 -1.0943 -0.0312 13 6 1.7508 -2.1611 -1.1875 14 6 2.0693 -3.5792 -0.6455 15 7 1.7325 -3.5167 0.7884 16 6 1.4058 -4.5685 1.5652 17 8 1.0486 -4.3887 2.7130 18 6 1.4817 -5.9412 1.0210 19 6 0.7010 -6.9582 1.5754 20 6 0.7686 -8.2414 1.0697 21 6 1.6088 -8.5273 0.0132 22 6 2.3949 -7.5181 -0.5498 23 6 2.3321 -6.2232 -0.0474 24 6 3.2868 -7.8492 -1.6815 25 6 3.0674 -8.9514 -2.3838 26 6 1.9199 -9.8650 -2.0547 27 6 1.6953 -9.9248 -0.5422 28 6 1.8183 -2.1177 1.2322 29 1 -0.3633 0.0904 1.0236 30 1 -0.3633 0.8413 -0.5902 31 1 -0.3633 -0.9318 -0.4335 32 1 -0.0460 3.0599 1.4367 33 1 0.6850 -2.0446 -1.3845 34 1 2.3369 -1.9447 -2.0807 35 1 3.1264 -3.8096 -0.7772 36 1 1.4524 -4.3243 -1.1479 37 1 0.0422 -6.7401 2.4029 38 1 0.1628 -9.0236 1.5029 39 1 2.9388 -5.4418 -0.4806 40 1 4.1111 -7.1984 -1.9334 41 1 3.7235 -9.1972 -3.2057 42 1 1.0165 -9.4961 -2.5403 43 1 2.1413 -10.8665 -2.4233 44 1 2.5247 -10.4515 -0.0702 45 1 0.7658 -10.4551 -0.3349 46 1 0.8541 -1.7931 1.6236 47 1 2.5830 -2.0194 2.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972522907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:43 Heat of formation + Delta-G solvation = 38.849317 kcal Electronic energy + Delta-G solvation = -27332.537319 eV Core-core repulsion = 23674.106232 eV Total energy + Delta-G solvation = -3658.431087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57898 -39.32180 -37.45515 -35.98537 -34.85261 -32.84381 -31.64212 -30.47862 -29.74953 -29.50667 -27.70518 -26.04494 -24.94019 -23.52222 -22.90656 -22.54204 -21.84220 -20.05275 -19.18408 -18.16441 -17.06982 -16.89677 -16.63536 -15.89182 -15.79742 -15.28155 -14.94147 -14.67012 -14.59398 -13.96695 -13.81574 -13.46614 -13.32262 -13.13994 -12.92217 -12.83991 -12.61007 -12.42463 -12.26665 -12.13124 -11.88013 -11.82702 -11.42781 -11.13316 -10.88463 -10.84051 -10.71742 -10.55015 -10.41657 -10.31441 -10.24940 -9.90905 -9.84964 -9.67582 -8.96477 -8.57603 -8.38742 -8.22625 -6.79982 -5.75973 -3.26692 0.62088 0.95122 2.13388 2.99461 3.20661 3.37290 3.42249 3.43006 3.78825 4.29040 4.32856 4.44536 4.52680 4.67764 4.71855 4.79926 4.96570 5.01515 5.08346 5.12852 5.27559 5.28688 5.32653 5.40325 5.44709 5.47652 5.57945 5.67542 5.71775 5.77501 5.81840 5.88762 5.99169 6.01013 6.09895 6.24007 6.33672 6.36285 6.36734 6.53775 6.55864 6.66515 6.74837 6.85115 6.87101 7.38865 7.73461 7.79336 7.79778 8.34882 8.39128 9.19402 9.80139 10.30010 11.27891 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.025452 B = 0.002572 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.828122 B =10883.204619 C =11557.553420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.097 3.903 15 N -0.606 5.606 16 C 0.566 3.434 17 O -0.541 6.541 18 C -0.125 4.125 19 C -0.060 4.060 20 C -0.126 4.126 21 C -0.059 4.059 22 C -0.068 4.068 23 C -0.081 4.081 24 C -0.117 4.117 25 C -0.147 4.147 26 C -0.092 4.092 27 C -0.081 4.081 28 C 0.087 3.913 29 H 0.031 0.969 30 H 0.047 0.953 31 H -0.001 1.001 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -24.822 -7.467 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.026 4.026 15 N -0.339 5.339 16 C 0.355 3.645 17 O -0.420 6.420 18 C -0.128 4.128 19 C -0.079 4.079 20 C -0.144 4.144 21 C -0.059 4.059 22 C -0.068 4.068 23 C -0.099 4.099 24 C -0.135 4.135 25 C -0.165 4.165 26 C -0.129 4.129 27 C -0.118 4.118 28 C -0.038 4.038 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.018 0.982 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.217 -24.567 -6.728 25.673 hybrid contribution 0.449 1.001 0.066 1.099 sum 3.667 -23.565 -6.661 24.762 Atomic orbital electron populations 1.20835 0.82308 0.95507 0.99601 1.43888 1.01949 0.99821 1.85025 1.19175 0.99502 0.85790 1.34700 0.91270 1.25163 0.97265 0.98882 0.97960 1.70050 1.15746 1.27916 1.41295 0.86283 0.78842 0.83328 0.77708 1.20978 1.21588 1.20847 1.21361 0.96386 0.85980 0.90005 0.90315 1.23438 1.02970 0.93067 1.00010 1.22647 0.99421 0.99334 0.81187 1.48436 1.67049 1.07916 1.10521 1.17973 0.77702 0.83697 0.85176 1.90774 1.47528 1.85699 1.17952 1.19923 1.00635 0.93985 0.98286 1.21287 0.96891 0.91621 0.98072 1.20852 0.99913 0.96576 0.97062 1.20154 0.95169 0.95373 0.95247 1.18785 0.97998 0.92882 0.97143 1.21896 0.97463 0.96441 0.94132 1.21619 0.98848 0.97879 0.95157 1.23134 0.98358 0.95475 0.99529 1.20474 0.97606 0.99342 0.95502 1.20523 1.02853 0.93142 0.95292 1.22965 1.02539 0.78436 0.99832 0.95078 0.93460 0.98245 0.93515 0.90283 0.90334 0.91408 0.90847 0.84831 0.85324 0.84001 0.85869 0.86540 0.90484 0.90534 0.90204 0.90164 0.90721 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 7.71 59.85 0.46 4.42 16 2 N -0.59 -14.29 2.93 -171.39 -0.50 -14.80 16 3 C -0.26 -7.01 9.62 -15.06 -0.14 -7.15 16 4 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 5 C 0.01 0.17 5.24 -17.43 -0.09 0.08 16 6 N -0.91 -26.22 10.44 55.49 0.58 -25.64 16 7 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 C 0.17 3.40 3.44 -66.10 -0.23 3.18 16 12 H 0.08 1.51 7.95 -51.93 -0.41 1.09 16 13 C -0.15 -2.44 6.60 -24.46 -0.16 -2.60 16 14 C 0.10 1.31 5.00 -2.41 -0.01 1.29 16 15 N -0.61 -10.30 3.32 -171.49 -0.57 -10.87 16 16 C 0.57 10.02 7.64 -12.32 -0.09 9.93 16 17 O -0.54 -11.55 16.93 5.32 0.09 -11.46 16 18 C -0.13 -1.78 5.67 -104.98 -0.60 -2.37 16 19 C -0.06 -0.76 9.58 -39.10 -0.37 -1.14 16 20 C -0.13 -1.28 9.69 -39.73 -0.38 -1.66 16 21 C -0.06 -0.58 5.68 -104.18 -0.59 -1.17 16 22 C -0.07 -0.72 5.77 -105.10 -0.61 -1.33 16 23 C -0.08 -0.97 7.83 -38.84 -0.30 -1.27 16 24 C -0.12 -1.00 9.90 -37.56 -0.37 -1.38 16 25 C -0.15 -1.04 10.02 -36.40 -0.36 -1.41 16 26 C -0.09 -0.58 6.06 -28.05 -0.17 -0.75 16 27 C -0.08 -0.56 5.97 -27.90 -0.17 -0.73 16 28 C 0.09 1.72 6.51 -3.06 -0.02 1.70 16 29 H 0.03 0.84 7.27 -51.93 -0.38 0.46 16 30 H 0.05 1.24 7.25 -51.93 -0.38 0.87 16 31 H 0.00 -0.02 6.12 -51.93 -0.32 -0.34 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.08 1.35 6.14 -51.93 -0.32 1.03 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.76 6.84 -51.93 -0.36 0.41 16 36 H 0.07 0.89 6.81 -51.93 -0.35 0.53 16 37 H 0.13 1.70 7.83 -52.49 -0.41 1.29 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.14 1.52 4.59 -52.49 -0.24 1.28 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 46 H 0.07 1.71 7.06 -51.93 -0.37 1.34 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -32.07 369.38 -10.96 -43.03 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.88 Total: 0.01 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -4.22 Total: -2.36 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.49 Total: -51.31 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.07 -10.96 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972522907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.875 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds