Wall clock time and date at job start Tue Mar 31 2020 14:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39562 * 120.13976 * 221.66585 * 3 2 1 5 5 C 1.37954 * 119.85154 * 180.28023 * 4 3 2 6 6 C 1.38367 * 120.14522 * 359.72505 * 5 4 3 7 7 C 1.38317 * 120.28501 * 0.02562 * 6 5 4 8 8 C 1.37995 * 120.14328 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.06897 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47218 * 264.99471 * 9 8 7 11 11 O 1.21282 * 120.00019 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00240 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00014 * 0.02562 * 12 10 9 14 14 C 1.46507 * 120.00359 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.45897 * 240.00340 * 14 12 10 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 12 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 119.93020 * 14 12 10 28 28 H 4.52090 * 14.02048 * 359.97438 * 4 2 1 29 29 H 1.07994 * 120.07337 * 359.97438 * 4 3 2 30 30 H 1.07994 * 119.92634 * 179.75421 * 5 4 3 31 31 H 1.08000 * 119.85472 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.92917 * 179.97438 * 7 6 5 33 33 H 1.09009 * 109.46728 * 144.99966 * 9 8 7 34 34 H 1.08998 * 109.47693 * 25.00611 * 9 8 7 35 35 H 1.08994 * 109.47201 * 270.00443 * 13 12 10 36 36 H 1.09000 * 109.46830 * 30.00191 * 13 12 10 37 37 H 1.08996 * 109.47301 * 149.99881 * 13 12 10 38 38 H 1.08996 * 109.45453 * 359.97332 * 14 12 10 39 39 H 1.09001 * 109.50071 * 58.66060 * 15 14 12 40 40 H 1.09005 * 109.49477 * 298.56396 * 15 14 12 41 41 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 42 42 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 43 43 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 45 45 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 46 46 H 1.08995 * 109.49931 * 301.34255 * 27 14 12 47 47 H 1.09003 * 109.49592 * 61.43695 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 0.9026 0.8024 5 6 4.6858 0.9019 0.7934 6 6 5.3751 0.0058 -0.0045 7 6 4.6869 -0.8940 -0.7980 8 6 3.3070 -0.9037 -0.7982 9 6 2.5589 -1.8853 -1.6631 10 6 2.1954 -1.2283 -2.9697 11 8 2.5131 -0.0766 -3.1783 12 7 1.5174 -1.9206 -3.9064 13 6 1.1332 -3.3117 -3.6542 14 6 1.1646 -1.2821 -5.1770 15 6 -0.3568 -1.2814 -5.3419 16 6 -0.7237 -0.5823 -6.6547 17 7 0.0023 -1.2282 -7.7568 18 6 -0.6687 -1.6959 -8.8550 19 1 -1.6960 -2.0163 -8.7641 20 6 -0.0285 -1.7582 -10.0851 21 7 1.0813 -1.0792 -10.2845 22 14 -0.7420 -2.8055 -11.4574 23 1 -1.9852 -3.4643 -10.9822 24 1 -1.0534 -1.9444 -12.6265 25 1 0.2455 -3.8410 -11.8544 26 6 1.4620 -1.3662 -7.6557 27 6 1.8044 -2.0565 -6.3317 28 1 -1.0500 -0.0003 -0.0009 29 1 2.7695 1.6028 1.4251 30 1 5.2290 1.6020 1.4108 31 1 6.4551 0.0091 -0.0075 32 1 5.2307 -1.5907 -1.4189 33 1 1.6504 -2.2021 -1.1507 34 1 3.1888 -2.7537 -1.8557 35 1 1.9260 -3.9757 -3.9986 36 1 0.9761 -3.4571 -2.5855 37 1 0.2117 -3.5371 -4.1909 38 1 1.5309 -0.2556 -5.1814 39 1 -0.8131 -0.7498 -4.5069 40 1 -0.7210 -2.3086 -5.3626 41 1 -1.7970 -0.6659 -6.8257 42 1 -0.4434 0.4695 -6.5994 43 1 1.5285 -1.1224 -11.1441 44 1 1.9230 -0.3788 -7.6829 45 1 1.8331 -1.9656 -8.4869 46 1 2.8863 -2.0766 -6.2009 47 1 1.4198 -3.0763 -6.3430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006348506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:29 Heat of formation + Delta-G solvation = 67.093156 kcal Electronic energy + Delta-G solvation = -27487.541913 eV Core-core repulsion = 23830.335571 eV Total energy + Delta-G solvation = -3657.206342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32907 -39.15926 -37.32849 -35.05399 -34.08190 -33.01818 -32.26388 -30.40828 -30.23251 -29.65049 -27.79947 -26.82581 -24.92565 -23.47395 -22.55367 -22.17687 -21.47826 -19.42452 -18.91760 -18.66322 -17.01995 -16.80024 -16.38910 -16.01654 -15.78838 -15.24497 -14.97915 -14.72783 -13.95495 -13.86501 -13.62782 -13.45727 -13.39914 -13.14575 -13.02496 -12.85541 -12.59862 -12.39744 -12.20614 -12.08604 -11.60714 -11.46154 -11.42879 -11.28164 -11.11603 -10.79734 -10.73504 -10.54823 -10.35272 -10.18427 -10.07705 -9.76800 -9.66856 -9.50570 -8.96387 -8.60055 -8.53053 -8.27234 -6.68289 -5.79165 -3.21928 0.79177 1.17832 2.62295 2.79786 2.89160 3.20055 3.36552 3.44274 3.46363 3.84388 4.14434 4.47331 4.48938 4.63630 4.73341 4.83376 5.00881 5.13332 5.22400 5.27079 5.33458 5.39560 5.43122 5.44112 5.50041 5.52659 5.67969 5.72427 5.81910 5.89427 5.92734 6.08612 6.22246 6.26161 6.28415 6.34230 6.36085 6.50236 6.60003 6.63037 6.75007 6.77655 6.93064 6.97560 7.35086 7.41059 7.58464 7.68022 7.79438 8.37367 8.44562 9.20591 9.83889 10.41199 11.29656 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.002639 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.358660 B =10607.425617 C =10973.153986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.144 4.144 3 C 0.023 3.977 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.109 4.109 7 C -0.107 4.107 8 C -0.039 4.039 9 C -0.105 4.105 10 C 0.514 3.486 11 O -0.533 6.533 12 N -0.609 5.609 13 C 0.076 3.924 14 C 0.146 3.854 15 C -0.137 4.137 16 C 0.148 3.852 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.174 3.826 27 C -0.144 4.144 28 H 0.223 0.777 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -2.979 23.324 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.023 3.977 4 C -0.115 4.115 5 C -0.140 4.140 6 C -0.127 4.127 7 C -0.125 4.125 8 C -0.040 4.040 9 C -0.144 4.144 10 C 0.301 3.699 11 O -0.409 6.409 12 N -0.342 5.342 13 C -0.068 4.068 14 C 0.044 3.956 15 C -0.178 4.178 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.048 3.952 27 C -0.184 4.184 28 H 0.240 0.760 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.831 -2.355 23.035 23.653 hybrid contribution -0.501 -0.621 -0.793 1.125 sum 4.330 -2.976 22.241 22.854 Atomic orbital electron populations 1.24875 0.95761 0.99154 0.99666 1.19961 0.92012 1.01378 1.01062 1.15775 0.86548 0.97107 0.98289 1.21141 0.94251 0.97712 0.98353 1.21044 0.93826 0.99259 0.99834 1.21207 1.00055 0.95290 0.96176 1.20934 0.92951 0.99610 0.98981 1.19378 0.93452 0.95756 0.95378 1.20747 1.01746 0.98199 0.93732 1.20333 0.78039 0.86608 0.84878 1.90714 1.53595 1.17172 1.79441 1.48141 1.55805 1.13081 1.17190 1.21761 1.01426 0.82389 1.01211 1.21174 0.95294 0.98149 0.80991 1.22362 0.94638 1.01385 0.99370 1.20853 0.96173 0.94057 0.86817 1.44091 1.02613 1.67042 1.17768 1.19211 0.97361 1.35454 0.86148 0.91632 1.25064 0.98290 0.99304 0.97021 1.70044 1.19985 1.41222 1.23353 0.86233 0.78427 0.80051 0.82114 1.20274 1.21715 1.21582 1.20753 0.84041 0.97590 0.92859 1.22540 0.98609 0.99993 0.97264 0.76005 0.85698 0.85609 0.85671 0.85582 0.88097 0.87938 0.92615 0.91679 0.90432 0.88796 0.93017 0.92098 0.92512 0.96264 0.93647 0.96211 0.89201 0.93166 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 19.25 29.55 0.57 -1.37 16 2 C -0.14 -1.85 11.80 -38.84 -0.46 -2.31 16 3 C 0.02 0.29 5.72 -107.00 -0.61 -0.32 16 4 C -0.10 -1.05 9.75 -39.19 -0.38 -1.44 16 5 C -0.12 -1.15 10.03 -39.64 -0.40 -1.54 16 6 C -0.11 -1.04 10.04 -39.50 -0.40 -1.44 16 7 C -0.11 -1.16 9.67 -39.64 -0.38 -1.54 16 8 C -0.04 -0.49 4.41 -104.23 -0.46 -0.94 16 9 C -0.10 -1.19 3.89 -29.03 -0.11 -1.31 16 10 C 0.51 7.99 7.66 -10.99 -0.08 7.90 16 11 O -0.53 -10.54 15.36 5.56 0.09 -10.46 16 12 N -0.61 -9.10 2.76 -173.89 -0.48 -9.58 16 13 C 0.08 0.83 9.33 59.85 0.56 1.39 16 14 C 0.15 2.64 2.48 -67.89 -0.17 2.48 16 15 C -0.14 -2.44 5.31 -26.61 -0.14 -2.59 16 16 C 0.15 3.16 6.51 -3.71 -0.02 3.13 16 17 N -0.59 -14.88 3.00 -172.29 -0.52 -15.40 16 18 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 21 N -0.90 -26.28 11.20 55.49 0.62 -25.66 16 22 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.17 4.20 5.30 -3.69 -0.02 4.18 16 27 C -0.14 -2.80 5.34 -26.61 -0.14 -2.94 16 28 H 0.22 1.59 7.80 -54.09 -0.42 1.17 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.10 1.02 6.55 -51.92 -0.34 0.68 16 34 H 0.10 0.90 8.02 -51.93 -0.42 0.49 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 37 H 0.08 0.88 6.45 -51.93 -0.34 0.55 16 38 H 0.09 1.97 6.90 -51.93 -0.36 1.62 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -33.68 383.97 -9.46 -43.13 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.04 Total: 1.35 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.89 Total: -5.71 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.38 Total: -50.64 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.68 -9.46 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006348506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.226 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds