Wall clock time and date at job start Tue Mar 31 2020 14:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39562 * 120.13976 * 221.66585 * 3 2 1 5 5 C 1.37954 * 119.85154 * 180.28023 * 4 3 2 6 6 C 1.38367 * 120.14522 * 359.72505 * 5 4 3 7 7 C 1.38317 * 120.28501 * 0.02562 * 6 5 4 8 8 C 1.37995 * 120.14328 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.06897 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47218 * 264.99471 * 9 8 7 11 11 O 1.21282 * 120.00019 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00240 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00014 * 0.02562 * 12 10 9 14 14 C 1.46507 * 120.00359 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.45897 * 240.00340 * 14 12 10 16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 12 17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14 18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18 26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15 27 27 C 1.53043 * 109.45897 * 119.93020 * 14 12 10 28 28 H 4.52090 * 14.02048 * 359.97438 * 4 2 1 29 29 H 1.07994 * 120.07337 * 359.97438 * 4 3 2 30 30 H 1.07994 * 119.92634 * 179.75421 * 5 4 3 31 31 H 1.08000 * 119.85472 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.92917 * 179.97438 * 7 6 5 33 33 H 1.09009 * 109.46728 * 144.99966 * 9 8 7 34 34 H 1.08998 * 109.47693 * 25.00611 * 9 8 7 35 35 H 1.08994 * 109.47201 * 270.00443 * 13 12 10 36 36 H 1.09000 * 109.46830 * 30.00191 * 13 12 10 37 37 H 1.08996 * 109.47301 * 149.99881 * 13 12 10 38 38 H 1.08996 * 109.45453 * 359.97332 * 14 12 10 39 39 H 1.09001 * 109.50071 * 58.66060 * 15 14 12 40 40 H 1.09005 * 109.49477 * 298.56396 * 15 14 12 41 41 H 1.09000 * 109.58954 * 174.41929 * 16 15 14 42 42 H 1.08996 * 109.58649 * 294.70243 * 16 15 14 43 43 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.46458 * 293.56938 * 26 17 16 45 45 H 1.08992 * 109.71060 * 173.28601 * 26 17 16 46 46 H 1.08995 * 109.49931 * 301.34255 * 27 14 12 47 47 H 1.09003 * 109.49592 * 61.43695 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 0.9026 0.8024 5 6 4.6858 0.9019 0.7934 6 6 5.3751 0.0058 -0.0045 7 6 4.6869 -0.8940 -0.7980 8 6 3.3070 -0.9037 -0.7982 9 6 2.5589 -1.8853 -1.6631 10 6 2.1954 -1.2283 -2.9697 11 8 2.5131 -0.0766 -3.1783 12 7 1.5174 -1.9206 -3.9064 13 6 1.1332 -3.3117 -3.6542 14 6 1.1646 -1.2821 -5.1770 15 6 -0.3568 -1.2814 -5.3419 16 6 -0.7237 -0.5823 -6.6547 17 7 0.0023 -1.2282 -7.7568 18 6 -0.6687 -1.6959 -8.8550 19 1 -1.6960 -2.0163 -8.7641 20 6 -0.0285 -1.7582 -10.0851 21 7 1.0813 -1.0792 -10.2845 22 14 -0.7420 -2.8055 -11.4574 23 1 -1.9852 -3.4643 -10.9822 24 1 -1.0534 -1.9444 -12.6265 25 1 0.2455 -3.8410 -11.8544 26 6 1.4620 -1.3662 -7.6557 27 6 1.8044 -2.0565 -6.3317 28 1 -1.0500 -0.0003 -0.0009 29 1 2.7695 1.6028 1.4251 30 1 5.2290 1.6020 1.4108 31 1 6.4551 0.0091 -0.0075 32 1 5.2307 -1.5907 -1.4189 33 1 1.6504 -2.2021 -1.1507 34 1 3.1888 -2.7537 -1.8557 35 1 1.9260 -3.9757 -3.9986 36 1 0.9761 -3.4571 -2.5855 37 1 0.2117 -3.5371 -4.1909 38 1 1.5309 -0.2556 -5.1814 39 1 -0.8131 -0.7498 -4.5069 40 1 -0.7210 -2.3086 -5.3626 41 1 -1.7970 -0.6659 -6.8257 42 1 -0.4434 0.4695 -6.5994 43 1 1.5285 -1.1224 -11.1441 44 1 1.9230 -0.3788 -7.6829 45 1 1.8331 -1.9656 -8.4869 46 1 2.8863 -2.0766 -6.2009 47 1 1.4198 -3.0763 -6.3430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006348506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:28 Heat of formation + Delta-G solvation = 49.005728 kcal Electronic energy + Delta-G solvation = -27488.326243 eV Core-core repulsion = 23830.335571 eV Total energy + Delta-G solvation = -3657.990672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43089 -40.15098 -38.88479 -36.54315 -34.90767 -34.40040 -33.57338 -31.96767 -31.42180 -31.13088 -28.80403 -27.91348 -26.70788 -24.30224 -23.94874 -23.88302 -22.62353 -20.88155 -20.17425 -19.56870 -18.76696 -18.08772 -17.36204 -17.02834 -16.93957 -16.68276 -16.06020 -15.91407 -15.63553 -15.39904 -14.90329 -14.63970 -14.59893 -14.39883 -14.30529 -14.00967 -13.88414 -13.75784 -13.20116 -13.16297 -13.05288 -13.00820 -12.64402 -12.50331 -12.37902 -12.18216 -12.11673 -12.09133 -11.96010 -11.89923 -11.48881 -11.37874 -11.33184 -10.86059 -10.58808 -9.77268 -9.58068 -9.40058 -8.73320 -7.88795 -5.35479 -0.00275 0.39362 1.47074 1.48636 1.59680 1.63820 1.77395 2.01351 2.11689 2.50847 3.00753 3.27292 3.39344 3.59264 3.63345 3.72904 3.88557 3.98833 4.04742 4.14445 4.25146 4.30796 4.34642 4.43721 4.46658 4.53510 4.61342 4.65565 4.70375 4.72277 4.76046 4.84260 4.95556 5.02512 5.03197 5.08511 5.12294 5.18837 5.26937 5.43278 5.47808 5.53593 5.56481 5.60838 5.62623 5.67741 6.01850 6.37080 6.46300 6.58129 7.12003 7.20241 7.81703 8.35551 9.18739 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.024526 B = 0.002639 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.358660 B =10607.425617 C =10973.153986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.185 4.185 3 C -0.004 4.004 4 C -0.112 4.112 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.063 4.063 9 C -0.093 4.093 10 C 0.511 3.489 11 O -0.584 6.584 12 N -0.607 5.607 13 C 0.068 3.932 14 C 0.155 3.845 15 C -0.120 4.120 16 C 0.144 3.856 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.289 1.289 26 C 0.182 3.818 27 C -0.125 4.125 28 H 0.254 0.746 29 H 0.134 0.866 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.003 0.997 43 H 0.250 0.750 44 H -0.014 1.014 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -4.981 25.264 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.185 4.185 3 C -0.004 4.004 4 C -0.130 4.130 5 C -0.140 4.140 6 C -0.131 4.131 7 C -0.137 4.137 8 C -0.063 4.063 9 C -0.132 4.132 10 C 0.300 3.700 11 O -0.464 6.464 12 N -0.339 5.339 13 C -0.074 4.074 14 C 0.052 3.948 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.056 3.944 27 C -0.165 4.165 28 H 0.270 0.730 29 H 0.152 0.848 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.004 0.996 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.233 -4.396 25.020 25.753 hybrid contribution -0.322 0.098 -1.349 1.390 sum 3.911 -4.298 23.671 24.374 Atomic orbital electron populations 1.25693 0.96545 0.97699 0.98293 1.20446 0.92801 1.02842 1.02452 1.16120 0.87060 0.97993 0.99230 1.21417 0.95182 0.97843 0.98568 1.21418 0.93450 0.99394 0.99691 1.21593 1.01498 0.94621 0.95437 1.21251 0.92766 1.00291 0.99389 1.19599 0.94233 0.96466 0.96000 1.20739 1.02923 0.98493 0.91030 1.21074 0.76947 0.86034 0.85922 1.90693 1.55542 1.19594 1.80530 1.48101 1.55568 1.14601 1.15636 1.22077 1.01857 0.79869 1.03589 1.20737 0.95279 0.96429 0.82376 1.22145 0.94345 1.01924 0.97562 1.20989 0.96258 0.93415 0.87583 1.44341 1.02933 1.67570 1.18320 1.19579 0.97734 1.34879 0.86890 0.91024 1.25878 0.98869 1.00606 0.99457 1.70215 1.21568 1.42940 1.23718 0.85162 0.78095 0.78124 0.78778 1.18690 1.22192 1.21588 1.20505 0.83742 0.95700 0.94498 1.22256 0.99119 1.00012 0.95121 0.72975 0.84766 0.82908 0.83052 0.84147 0.86564 0.84967 0.91176 0.88387 0.90413 0.92320 0.91275 0.90523 0.91728 0.97905 0.94106 0.99633 0.92141 0.92633 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 19.25 74.32 1.43 -1.93 16 2 C -0.19 -4.64 11.80 30.01 0.35 -4.29 16 3 C 0.00 -0.10 5.72 -21.41 -0.12 -0.22 16 4 C -0.11 -2.40 9.75 22.52 0.22 -2.18 16 5 C -0.12 -2.12 10.03 22.23 0.22 -1.90 16 6 C -0.11 -1.98 10.04 22.32 0.22 -1.75 16 7 C -0.12 -2.43 9.67 22.23 0.21 -2.21 16 8 C -0.06 -1.49 4.41 -19.61 -0.09 -1.57 16 9 C -0.09 -1.92 3.89 29.10 0.11 -1.81 16 10 C 0.51 15.29 7.66 87.66 0.67 15.96 16 11 O -0.58 -23.46 15.36 -3.04 -0.05 -23.51 16 12 N -0.61 -17.01 2.76 -822.45 -2.27 -19.28 16 13 C 0.07 1.25 9.33 127.77 1.19 2.44 16 14 C 0.16 5.57 2.48 45.02 0.11 5.69 16 15 C -0.12 -4.10 5.31 30.67 0.16 -3.94 16 16 C 0.14 6.14 6.51 86.36 0.56 6.71 16 17 N -0.61 -31.04 3.00 -699.01 -2.10 -33.14 16 18 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 19 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 21 N -0.94 -56.43 11.20 21.65 0.24 -56.19 16 22 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 C 0.18 9.12 5.30 86.35 0.46 9.58 16 27 C -0.13 -4.85 5.34 30.67 0.16 -4.68 16 28 H 0.25 2.96 7.80 -4.42 -0.03 2.92 16 29 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.12 2.03 6.55 -2.38 -0.02 2.01 16 34 H 0.13 1.89 8.02 -2.39 -0.02 1.87 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.19 6.44 -2.39 -0.02 1.17 16 37 H 0.08 1.47 6.45 -2.39 -0.02 1.45 16 38 H 0.06 2.55 6.90 -2.39 -0.02 2.54 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.08 2.42 6.72 -2.38 -0.02 2.40 16 41 H 0.06 2.62 7.93 -2.39 -0.02 2.60 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.07 2.55 7.72 -2.39 -0.02 2.54 16 Total: -1.00 -76.66 383.97 5.92 -70.73 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.95 Total: 16.88 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 7.12 Total: -2.18 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.13 Total: -108.61 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.66 5.92 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006348506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.740 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds