Wall clock time and date at job start Tue Mar 31 2020 14:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39554 * 120.14642 * 347.72237 * 3 2 1 5 5 C 1.37950 * 119.85791 * 180.27537 * 4 3 2 6 6 C 1.38366 * 120.13796 * 359.72553 * 5 4 3 7 7 C 1.38318 * 120.29249 * 0.02562 * 6 5 4 8 8 C 1.38006 * 120.14027 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.07376 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46969 * 265.00110 * 9 8 7 11 11 O 1.21274 * 120.00073 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99588 * 180.27393 * 10 9 8 13 13 C 1.46927 * 120.63230 * 359.72894 * 12 10 9 14 14 C 1.53187 * 108.77911 * 126.36535 * 13 12 10 15 15 C 1.53045 * 109.31237 * 54.63493 * 14 13 12 16 16 C 1.53050 * 109.53628 * 298.63316 * 15 14 13 17 17 H 1.09000 * 109.49549 * 301.41481 * 16 15 14 18 18 N 1.46496 * 109.49564 * 181.35158 * 16 15 14 19 19 C 1.46500 * 120.00065 * 299.99659 * 18 16 15 20 20 C 1.36933 * 120.00087 * 120.00358 * 18 16 15 21 21 H 1.08004 * 120.00040 * 21.99243 * 20 18 16 22 22 C 1.38815 * 120.00387 * 201.99283 * 20 18 16 23 23 N 1.31620 * 119.99249 * 12.71486 * 22 20 18 24 24 Si 1.86800 * 120.00325 * 192.71347 * 22 20 18 25 25 H 1.48502 * 109.46906 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47187 * 119.99976 * 24 22 20 27 27 H 1.48497 * 109.46816 * 239.99841 * 24 22 20 28 28 C 1.46931 * 120.62912 * 179.43944 * 12 10 9 29 29 H 4.52083 * 14.02112 * 0.02562 * 4 2 1 30 30 H 1.08003 * 120.06839 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.92968 * 179.74829 * 5 4 3 32 32 H 1.08008 * 119.85254 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.93069 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46622 * 144.99776 * 9 8 7 35 35 H 1.09004 * 109.46848 * 25.00262 * 9 8 7 36 36 H 1.09002 * 109.57959 * 246.15151 * 13 12 10 37 37 H 1.08996 * 109.58775 * 6.42968 * 13 12 10 38 38 H 1.08999 * 109.50057 * 174.58258 * 14 13 12 39 39 H 1.08999 * 109.49686 * 294.68439 * 14 13 12 40 40 H 1.08990 * 109.46484 * 58.65213 * 15 14 13 41 41 H 1.09000 * 109.45771 * 178.61869 * 15 14 13 42 42 H 1.08998 * 109.47050 * 94.32982 * 19 18 16 43 43 H 1.08995 * 109.47360 * 214.32702 * 19 18 16 44 44 H 1.09003 * 109.47255 * 334.33154 * 19 18 16 45 45 H 0.97004 * 119.99451 * 180.02562 * 23 22 20 46 46 H 1.08996 * 109.58419 * 353.42594 * 28 12 10 47 47 H 1.08995 * 109.58197 * 113.84514 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3074 -1.1782 0.2566 5 6 4.6869 -1.1696 0.2608 6 6 5.3750 0.0033 0.0056 7 6 4.6859 1.1741 -0.2546 8 6 3.3059 1.1789 -0.2617 9 6 2.5566 2.4551 -0.5459 10 6 2.1934 3.1246 0.7545 11 8 2.5112 2.6152 1.8082 12 7 1.5101 4.2862 0.7465 13 6 1.1175 4.9151 -0.5221 14 6 -0.3915 5.1777 -0.4961 15 6 -0.7410 5.9989 0.7472 16 6 -0.3664 5.2097 2.0038 17 1 -0.9007 4.2597 2.0096 18 7 -0.7309 5.9829 3.1935 19 6 -0.1405 7.3049 3.4172 20 6 -1.6233 5.4699 4.0966 21 1 -1.7886 4.4038 4.1465 22 6 -2.3156 6.3202 4.9479 23 7 -2.3107 7.6180 4.7287 24 14 -3.2541 5.6225 6.4046 25 1 -3.1032 4.1453 6.4291 26 1 -2.7134 6.1967 7.6628 27 1 -4.6923 5.9706 6.2795 28 6 1.1380 4.9446 2.0062 29 1 -1.0500 -0.0013 -0.0002 30 1 2.7713 -2.0943 0.4564 31 1 5.2308 -2.0804 0.4632 32 1 6.4551 0.0047 0.0096 33 1 5.2289 2.0864 -0.4526 34 1 1.6481 2.2266 -1.1031 35 1 3.1859 3.1225 -1.1348 36 1 1.6505 5.8583 -0.6425 37 1 1.3605 4.2497 -1.3504 38 1 -0.6801 5.7304 -1.3901 39 1 -0.9256 4.2279 -0.4667 40 1 -0.1877 6.9378 0.7297 41 1 -1.8108 6.2080 0.7553 42 1 -0.8061 8.0718 3.0213 43 1 0.0011 7.4634 4.4863 44 1 0.8229 7.3631 2.9105 45 1 -2.7941 8.2122 5.3238 46 1 1.3924 4.2975 2.8456 47 1 1.6727 5.8902 2.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027664103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:32 Heat of formation + Delta-G solvation = 69.643812 kcal Electronic energy + Delta-G solvation = -27684.070138 eV Core-core repulsion = 24026.974400 eV Total energy + Delta-G solvation = -3657.095738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32523 -39.17515 -37.33326 -35.07296 -34.01712 -32.89493 -32.18995 -31.29521 -30.32802 -29.11345 -27.65362 -25.99618 -24.87670 -23.57403 -23.36203 -21.94670 -21.58413 -19.64969 -18.83991 -18.47949 -17.08563 -16.69671 -16.43827 -15.91164 -15.65048 -15.23603 -14.88047 -14.63144 -14.05808 -13.93127 -13.83016 -13.68851 -13.39420 -13.29961 -12.79760 -12.77581 -12.66750 -12.30786 -12.05696 -11.93073 -11.59312 -11.39874 -11.21708 -11.04548 -10.92553 -10.84504 -10.64519 -10.47002 -10.39548 -10.28723 -10.09133 -9.85791 -9.78346 -9.58301 -8.94239 -8.60343 -8.55011 -8.30025 -6.74776 -5.70944 -3.16404 0.83652 1.20768 2.70870 2.83549 2.94901 3.22872 3.39668 3.47176 3.50069 3.88755 4.21893 4.48906 4.52039 4.66883 4.73434 4.86020 4.96526 5.04425 5.16836 5.24732 5.28654 5.32929 5.45315 5.46773 5.53154 5.55874 5.60309 5.77396 5.85560 5.89072 5.97920 6.01157 6.17547 6.24480 6.26374 6.31330 6.39182 6.40562 6.53270 6.67803 6.78135 6.81690 6.96215 7.01947 7.40373 7.49770 7.66507 7.73714 7.83683 8.38548 8.44040 9.25194 9.87896 10.35950 11.33919 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.003116 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.223369 B = 8982.293430 C = 9610.837600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.149 4.149 3 C 0.026 3.974 4 C -0.097 4.097 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.107 4.107 8 C -0.040 4.040 9 C -0.104 4.104 10 C 0.515 3.485 11 O -0.532 6.532 12 N -0.607 5.607 13 C 0.107 3.893 14 C -0.132 4.132 15 C -0.132 4.132 16 C 0.170 3.830 17 H 0.063 0.937 18 N -0.593 5.593 19 C 0.162 3.838 20 C -0.253 4.253 21 H 0.068 0.932 22 C 0.002 3.998 23 N -0.908 5.908 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.098 3.902 29 H 0.224 0.776 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.043 0.957 44 H -0.002 1.002 45 H 0.251 0.749 46 H 0.088 0.912 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 -11.600 -16.489 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.149 4.149 3 C 0.026 3.974 4 C -0.115 4.115 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.040 4.040 9 C -0.144 4.144 10 C 0.302 3.698 11 O -0.409 6.409 12 N -0.341 5.341 13 C -0.016 4.016 14 C -0.171 4.171 15 C -0.171 4.171 16 C 0.060 3.940 17 H 0.081 0.919 18 N -0.315 5.315 19 C 0.018 3.982 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.196 4.196 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C -0.026 4.026 29 H 0.240 0.760 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.061 0.939 46 H 0.107 0.893 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.069 -11.716 -15.776 23.061 hybrid contribution -0.853 -0.074 0.814 1.182 sum 11.216 -11.791 -14.961 22.106 Atomic orbital electron populations 1.24914 0.95797 0.99171 0.98911 1.19931 0.91994 1.01416 1.01604 1.15779 0.86593 0.93608 1.01392 1.21149 0.94233 0.97004 0.99116 1.21039 0.93837 0.98450 1.00632 1.21190 0.99981 0.92643 0.99086 1.20915 0.92925 0.98450 1.00231 1.19378 0.93423 0.92817 0.98413 1.20736 1.01807 0.94822 0.97061 1.20299 0.78205 0.80508 0.90747 1.90718 1.53855 1.63377 1.32924 1.48181 1.55078 1.22870 1.07926 1.21756 0.96282 0.98120 0.85442 1.21931 0.94762 1.01086 0.99333 1.22116 1.02037 0.98750 0.94233 1.20482 0.91609 0.94994 0.86869 0.91867 1.43891 1.49251 1.17279 1.21046 1.20786 0.91791 0.86430 0.99192 1.19284 1.15904 0.91528 1.11495 0.91374 1.24982 0.98588 0.95559 1.00493 1.70087 1.45321 1.01917 1.37991 0.86186 0.79270 0.78434 0.82711 1.20301 1.21599 1.21774 1.22302 0.98212 0.96998 0.85056 0.75967 0.85686 0.85647 0.85742 0.85650 0.87985 0.88001 0.91435 0.90453 0.91290 0.91808 0.92467 0.91495 0.95223 0.93782 0.98393 0.93861 0.89315 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.15 -2.05 11.80 -38.83 -0.46 -2.51 16 3 C 0.03 0.35 5.72 -107.00 -0.61 -0.26 16 4 C -0.10 -1.11 9.75 -39.20 -0.38 -1.49 16 5 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 6 C -0.11 -1.07 10.04 -39.50 -0.40 -1.46 16 7 C -0.11 -1.16 9.67 -39.64 -0.38 -1.55 16 8 C -0.04 -0.50 4.41 -104.23 -0.46 -0.96 16 9 C -0.10 -1.22 3.69 -29.03 -0.11 -1.33 16 10 C 0.52 8.21 7.68 -10.99 -0.08 8.13 16 11 O -0.53 -10.81 15.45 5.56 0.09 -10.72 16 12 N -0.61 -9.33 2.98 -173.04 -0.52 -9.85 16 13 C 0.11 1.24 6.35 -3.71 -0.02 1.22 16 14 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 15 C -0.13 -2.28 5.15 -26.68 -0.14 -2.42 16 16 C 0.17 3.49 2.72 -68.03 -0.19 3.31 16 17 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 18 N -0.59 -14.87 2.82 -173.60 -0.49 -15.36 16 19 C 0.16 3.98 8.03 59.85 0.48 4.46 16 20 C -0.25 -7.05 9.60 -15.06 -0.14 -7.19 16 21 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 22 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 23 N -0.91 -26.49 10.64 55.49 0.59 -25.90 16 24 Si 0.90 22.25 29.57 -169.99 -5.03 17.22 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.10 1.84 5.77 -3.93 -0.02 1.82 16 29 H 0.22 1.93 7.80 -54.09 -0.42 1.51 16 30 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.10 1.09 6.84 -51.93 -0.36 0.73 16 35 H 0.10 0.88 7.85 -51.93 -0.41 0.47 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.67 5.93 -51.93 -0.31 0.37 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 43 H 0.04 1.17 7.21 -51.93 -0.37 0.80 16 44 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.09 1.93 7.01 -51.93 -0.36 1.57 16 47 H 0.06 1.16 6.48 -51.93 -0.34 0.83 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -33.91 383.00 -9.60 -43.51 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.02 Total: 0.54 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.00 Total: -5.20 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.41 Total: -51.11 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.91 -9.60 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027664103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.153 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds